LOC110530706 (LOC106569546)


Basic Information

Item Value
gene id LOC110530706
gene name LOC106569546
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 78830685 ~ 78861909 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986367.1
GATAGTCAAtggcctggagagaggagagagggggaggtaaacAAGATGGCGGCAACCTGATAGCAGCTGCATCAATAATAGCAAACCTCATATTTATGCAGACAGAGACAAATAAAACACTACATAACATCTGTCGATAGAGTCTGGATGTTAAGGTTCTCTGGAGCAGTATCCTGAGTTGCCAACTGGGAAAGACTAGTGAACTCCATAGAAGAGCTGACAATACATCTAGGACCCAGAGCATAACCATACTACAGACTGAAATAACTAATTTAGATCACAGATGGAGGTGACATGGAGCTAAGCAGCGGAATGTAAACTCAGCCAGACGTCCCACTCTGCTCAGTAGCACCTGTCCCACAGCCTGAACTCTCCACAAATCTTTTCACCCTGGACCTTGGCATCGCTGGGTCTTAGTTAACTACCCCACACCACTCTGGAAACGTTTACAGCTAGCCTACATCTTGTTCCCACGAACTTAAACTAACCTCTGTGTTTACAGACCTACTCTATTACAAGGTAAACTGTTTCTCTCAATGCCCATGCCTGGCTACACCTCCAATGTCACTTAGTGTTTTCTAATTGAACTGTGTCCCTGAGCCACCAGGATACACAGCCCAAGCCAAAGGTTTGAGGCCACAGTCCACTATATTGGACTGTCTGGACGCTACACGCTACAGTAACTAAGTTGATTTAACCATGAGTGTCGGGGAGCTGCGGCACCTGGACTATCTGACTGAGAATGAGCTGATGGGCATGGACACTTTCATCCACCGCATCGACTCCACAGAGGTGATCTACCAGCCGCGCAGGAAGAGGGCCAAGCTGATCGGGAAGTACCTGATGGGAGACCTGTTGGGGGAGGGCTCCTACGGTAAGGTGAAGGAGATGCTGGACTCTGACACGCTGTGTCGCAGGGCCGTCAAGATCCTCAAGAAGAAGAAGCTCAGAAGGATCCCCAATGGAGAGGCCAATGTGAAGAAGGAGATCCAGCTGCTCCGGAGACTTCAGAACAAAAATGTGATCCATTTGGTGGACGTGTTGTACAATGAAGAGAAGCAGAAAATGTATATGGTGATGGAGTATTGCGTATGTGGGATGCAAGAAATGCTGGACAGCGTCCCAGAGAAAAGATTTCCAGTATTTCAAGCTCACGGgTACTTTTTACAGCTGTTAGATGGTCTTGAATATTTGCACAGCCAGGGAATCGTTCACAAAGACATTAAACCAGGGAATCTGCTGCTGACCACCGACGGCACGCTCAAGATCTCAGACCTGGGCGTggcagagGCTCTGCACCCGTTTGCGAAGGATGACACGTGTCGTACAAGTCAGGGCTCGCCAGCGTTTCAGCCCCCCGAGATCGCCAACGGCCTGGACACGTTTTCAGGGTTCAAAGTGGACATCTGGTCCGCAGGCGTCACACTATACAACATTACAACGAGTCTATATCCGTTTGAAGGGGACAACATCTATAAGCTATTTGAGAACATTGGGAAGGGAGACTACAGTGTTCCTGAGGAGTGTGGCCCCTCCCTGTCAGACCTATTGCAAGGAATGCTTGAATATGATCCCGTCAAGAGGTTTTCCATACAGCACATCAGGCAACACAACTGGGTACGTAAAAAACACCCACCAACGGAGCCCCCGGTGCCCATCCCAGCCAGCGCGGAGAGCCGGGACGTGTGGCGCAGCATGACGGTGGTGCCCTACCTGGAAGACCTGCACGGCTACACCGAGGAAGAGGACCAGGAGTTCTATGACCAGGAGGATGACATCATCTACACTCAGGACTTCACTGTGCCAGggCAGGTACCAGAGGAGGATTTGGATGAGGCTGAGGTGGATCTGAGCCGGGCCCAGGCCAAGCCTGTGTGTGTAAACGGGACGGAGAGCAAGGCCAAGCCAGAGCGcaggtcctcctcctcatccAATCCCTCCCGCAAAGGAGTCTCCACAGCCAGCAAGATACGCAAGTTCTCCACCTGCAAACAGCAATGACCCCACCTCAACAACCCATCTGgtTTATCTTTCCCATCCTTGGCAAGGGTGAGAGAGAACTGCTGATGTTGTTCCTCCTGAACCATTTGGCTACAAACTATTCAAGGATGTCATgcggagagatggacagagagcagCAGAGAAAGACTGTACCCTCAAGGGTCTTTGTGTGAAGTGGCTCTTTGTGTTTCCGTTCCCCCCTCTGTTCTTTTGCTCCCTCCGTCCTCCCCTCTCAGGCTGTCCCAGAGGAGGTATGGCTGGCCGTGCAAGTCCCACCTTCGTGAACTCTGACCCCATTGGTTTTAGTTCTTAGACAACCTTTTATTTGACAGAACCTAAAGATACACGTTGTAAAAGGAATTAGGTTGATAAAGAATAGCTCTTCATTTTAACTATGAGGACAGTGATACTGATATAAAAACTGCATGCTGGATTGAACTTTGAGAAAGGGAAACTGCTGAGTTAaggacagacaaacagactgaAACCTTGGCCTCCACCcctggtgtgttgggaggggCTTTATTGTGTTCATTaggttttgtttattttttccaataaatctttttttattattatttatataaaaCACGTCCCAACCAAA

Function

NR:

description
serine/threonine-protein kinase STK11-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K07298 STK11, LKB1; serine/threonine-protein kinase 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986367.1 True 2605 mRNA 0.49 12 78830685 78861909

Neighbor

gene id symbol gene type direction distance location
LOC110530704 LOC106569544 coding upstream 6363 78816120 ~ 78824322 (+)
LOC110530703 LOC106569538 coding upstream 196607 78626521 ~ 78636077 (+)
plekhj1 plekhj1 coding upstream 220440 78607413 ~ 78610245 (+)
LOC110530701 LOC106569539 coding upstream 232918 78592298 ~ 78597767 (+)
onecut3b onecut3 coding upstream 469214 78335901 ~ 78361471 (+)
LOC110530707 LOC106569548 coding downstream 32682 78894591 ~ 78902977 (+)
LOC110530709 LOC106569551 coding downstream 77271 78939180 ~ 78952258 (+)
LOC110531004 LOC106569564 coding downstream 94326 78956235 ~ 78959026 (+)
LOC110530711 LOC106569552 coding downstream 125306 78987215 ~ 78992144 (+)
armc6 armc6 coding downstream 198686 79060595 ~ 79066221 (+)
G750525 NA non-coding upstream 44767 78785677 ~ 78785918 (+)
G750523 NA non-coding upstream 49669 78780765 ~ 78781016 (+)
G750521 NA non-coding upstream 51652 78778787 ~ 78779033 (+)
G750516 NA non-coding upstream 61740 78768644 ~ 78768945 (+)
G750510 NA non-coding upstream 82509 78747971 ~ 78748176 (+)
G750731 NA non-coding downstream 11057 78872966 ~ 78873344 (+)
G750741 NA non-coding downstream 30944 78892853 ~ 78893122 (+)
G750759 NA non-coding downstream 61385 78923294 ~ 78923524 (+)
G750770 NA non-coding downstream 70353 78932262 ~ 78932476 (+)
G750840 NA non-coding downstream 101437 78963346 ~ 78963575 (+)
G750533 LOC106569543 other upstream 33137 78797142 ~ 78797548 (+)
G749663 tcf3 other upstream 585070 78244210 ~ 78245615 (+)
LOC110530993 LOC106569518 other upstream 943329 77863590 ~ 77887401 (+)
G749137 NA other upstream 1448074 77302737 ~ 77382611 (+)
G748959 LOC106569508 other upstream 1558025 77266652 ~ 77272660 (+)
G750854 NA other downstream 117321 78979230 ~ 78979981 (+)
G750935 NA other downstream 333361 79195270 ~ 79197378 (+)
ncana LOC106569686 other downstream 483528 79210727 ~ 79347454 (+)
LOC110530726 LOC106600567 other downstream 686588 79548127 ~ 79579010 (+)
G752357 NA other downstream 1769401 80631310 ~ 80634052 (+)

Expression


Co-expression Network