LOC110531004 (LOC106569564)


Basic Information

Item Value
gene id LOC110531004
gene name LOC106569564
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 78956235 ~ 78959026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986372.1
acgagccaggcggcccaaactgcttgcacggaacgcaagGTGAAGCAGGACCTGCTGGGGATTGGCCGGCTCATACAGCCACAGCGTATCACGCTAGGAGGTTGTCCTGCCACTGAGGAGGACACTGACGCTCATGTGATCACCTTTGAATCAGAGCTGCATGGCTGTGGCAGTGAGCTGACGATGACTGAGGATGTGCTGATCTACACCTTCACTCTGTCTGAGGCAAAACCTCTTGCTAACACTTCTATAGTGAAGACCAGTGCAGCTATGGTTGATATTGAGTGCCACTACTTGAGGAATCACGATGTGAGCAGCAATGTCCTGAAGCCAACCTGGATCCCCAACATTTCCAACATGGTGGCAGAGGAACTCCTCTACTTCTCCCTGAGGTTAATGACTGCTGACTGGCAGTTTGAGAGGCCCTCCAACCATTACTATCTTGGTGACATCATCAACATGGAAGCCTCGGTCATGCCGTACCACCACGTTCCCCTCCGTGTCTTTGTGGACCGCTGTGTCGCCACCTTGGCGCCTGATGTCCACACTGTCCCTAGATATTCTTTCATTGAGGACCATGGGTGTCTGGTTGATGCCACGTTGACCGGCTCCAGCTCCCAGTTCCTGTCCAGATCCCAGGATGACAAGATCCCATTTCAGCTGGAGTCCTTCAGGTTCCAACCACAGAATGATTCCCAACAGCTCTACATAACATGTCATCTGAAAGCAGCTGCAGCGTCTTCCCCCATTGATGCTGAGAACAAGGCCTGCTCTTTCACTGATGGCTGGAAGGCTGCAGGTGGGGATGACCAGATGTGTGGCTGCTGTGACTTCCGCTGTGCTGCGAGGAAGGTTGGAGATCTGGACAGTGATTCAGATTTGCGGTGGGAAGGTAAAGCTACCCTGGGCCCGTAATTGTCCACGAGTAATATTACTACTTTAACATCTTGTTTCGGGGAGGATGTCTGCTGGGACTAATTCTGGAAGGTGTAGCATTATCACCATTCAGATTGGAGAATGATGTGTATATAGTGGATTACCTGTGTCTAAATATAGCAACCCTACTGACTTAGCCCCAATTTTCTGTATTGACTAGATGCTCACATCTTTGGAACTTAACATTGCATGTGGAGAATTATTAGGCTGCCCATTGGCTTATCCTCCTGTGGCTCAATGCAGTTTCCTCATAAACCAGATGTGTCATAATAAACATGAATCCACACACTCA

Function

NR:

description
PREDICTED: zona pellucida sperm-binding protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986372.1 True 1228 mRNA 0.50 9 78956235 78959026

Neighbor

gene id symbol gene type direction distance location
LOC110530709 LOC106569551 coding upstream 3977 78939180 ~ 78952258 (+)
LOC110530707 LOC106569548 coding upstream 53258 78894591 ~ 78902977 (+)
LOC110530706 LOC106569546 coding upstream 94326 78830685 ~ 78861909 (+)
LOC110530704 LOC106569544 coding upstream 131913 78816120 ~ 78824322 (+)
LOC110530703 LOC106569538 coding upstream 322157 78626521 ~ 78636077 (+)
LOC110530711 LOC106569552 coding downstream 28189 78987215 ~ 78992144 (+)
armc6 armc6 coding downstream 101569 79060595 ~ 79066221 (+)
slc25a42 LOC106569683 coding downstream 107725 79066751 ~ 79093256 (+)
ncana LOC106569686 coding downstream 251701 79210727 ~ 79347454 (+)
LOC110530721 LOC106600560 coding downstream 428570 79387596 ~ 79508009 (+)
G750770 NA non-coding upstream 23759 78932262 ~ 78932476 (+)
G750759 NA non-coding upstream 32711 78923294 ~ 78923524 (+)
G750741 NA non-coding upstream 63113 78892853 ~ 78893122 (+)
G750731 NA non-coding upstream 82891 78872966 ~ 78873344 (+)
G750525 NA non-coding upstream 170317 78785677 ~ 78785918 (+)
G750840 NA non-coding downstream 4320 78963346 ~ 78963575 (+)
G750843 NA non-coding downstream 7732 78966758 ~ 78967066 (+)
G750892 NA non-coding downstream 158729 79117755 ~ 79121181 (+)
G750923 NA non-coding downstream 209108 79168134 ~ 79170910 (+)
G750933 NA non-coding downstream 227147 79186173 ~ 79186999 (+)
G750533 LOC106569543 other upstream 158687 78797142 ~ 78797548 (+)
G749663 tcf3 other upstream 710620 78244210 ~ 78245615 (+)
LOC110530993 LOC106569518 other upstream 1068879 77863590 ~ 77887401 (+)
G749137 NA other upstream 1573624 77302737 ~ 77382611 (+)
G748959 LOC106569508 other upstream 1683575 77266652 ~ 77272660 (+)
G750854 NA other downstream 20204 78979230 ~ 78979981 (+)
G750935 NA other downstream 236244 79195270 ~ 79197378 (+)
LOC110530726 LOC106600567 other downstream 589471 79548127 ~ 79579010 (+)
G752357 NA other downstream 1672284 80631310 ~ 80634052 (+)

Expression


Co-expression Network