LOC110530726 (LOC106600567)


Basic Information

Item Value
gene id LOC110530726
gene name LOC106600567
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 79548127 ~ 79579010 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986406.1
TTCCTTAATCGTCACAAATTATGGGTTATGGCCAATGGTTATAGCCAGTTACAACTAGGGGTAGCTATGCACTGGAGCGTAAAGTTTTTGAATTGACCGACAATCGCTAGCAGACTGAGCTGTCACAGTCAGCCTGTTTCTTTACTGCCTGCTATGTTAGGTTACAGTCTGGCAAGTGTGGAAGAAGTCACAGTCAAGAGACTCAAGAAGCTTGAGCTGTGGCTAGCGACCCGACGTACATTATTTACCACAATtttcactagctagctagcctagttAGCTACGTTAACCAACGTTAGTTAAGTTAACAATGTCGTTCATTATGACGAAGAAAAATAAATTTAAATTTAAGGTCGATTTCGAGTTGGACGAACTATCTTCTGTTCCCTTTGTCAACGGGGTCTTGTTCTGCAAAGTACGGCTCCAAGACGGTGGCTTTACTGAAGAGTCCTCTCGGGAGCAGGTCCAGGCTAACTGTGTGCGCTGGAGGAAGAGGTTCTCCTTCCTGTGTAAGATGAGTGCCAACGCTGGGACAGGAGTACTGGACCCCTGTGTGTGCCGGGTGTCTGTGCGCAAGGAAATGAAGGGTGGAAAGACCTTTGCAAAGCTGGGTTTTGCTGACCTGAACCTGTCAGAGTTTGCTGGCTCTGGCAGCACCACGCGGCGATGTCTACTAGAGGGTTACGATACCAAGAACACCAGACAGGACAACTCCATACTCAAGGTCGTCATCAGCACACAGCTCATGTCTGGGGACCCCTGCTTTAAAACGCCACCGTCCACAGCCATGAAACTGGGCATCCAGCAGGCAGAGGCAGGGTGTCTCTACGAAGACAGGAAGGGAGGGGACACCCACACACCCTGCCTCCCCATACCAGAGCCCCCAGGgaagtgtgtgtctgttcctgaTGAGCCGAGAGCATCTGGCCACTCTAGAACATCCAGCTATGCCAGCCAACAGTCCAAAGTGTCAGGCTATAGCTCAGGTCACTCACGttcctccagcctatcagagctcaCACACAAGAGGAACCCCTCAGCGGGCTCCGCCTCCACAGGCATCGGCAGTATTCCTGAACCCAGCGTGGACCGGGGGGCTGAGAGGGAGGCCCGCTCTACACCTCCTGTCTCTGTCATCTGTTCCTGCTCCCCCGTGCCTGAACACCCCCTCACCCCCGCAAAGAGCTCTGCCTCCTCAGAGAGACTCAGCAGgcaTCCAGTGAAGCAGAGCTCGGTGGAGTGTCAGCTGAAGAGGGTAGACGCCACACGGGTAGACGCTGACGACATCGTGGAGAAGATCCTCCAGAGCCAGGACTTCAGCCACGGCCTGCTGGACTCCAGCGCTGAGGAGGAGGGGCTCAGGCTGTTTGTTGGTCCTGGTGGAAGCACAGCGCTGGGAAGCCAACACACCAGGGTTGGCGCGGGGCCCTACGAGCAGGTGGTGATCAGACGCTAGCCCCCTGGGAGTGGATGTGTCTCATAAGGTGCCAGAACACCACAAAGTCTGACAGAGGGAAATAGTTCTCACCTCTATGCAGGACAAACATTTTGTTCCAATGGGAGTCCAGGTCTGAGGTGTAGAACCTGTGTAAGCCTGCTCCCCTAGTGTTGAAGCCAGGAGGTGACCTGAAGTTCATGATTACAACTTGTTCAATAACTTTCAGAAGAAAGaggatatattgatatatatacacacactgtgcagtcagaaagtattgagaccccttgattctttccacattttgttacagtcttattctaaaatggattatatatatatatatatattcaatctaaacacaataccccataatgacaaagaaaaaacaaattTTCGACATTTATTAAAagtggaaatatcacatttacataagtattcagaccctttactcagtactgtgttgaagcacatttggcagcgattacagccctgagtcttcttgggtttgacgctacaagcttggcgctcctgta
>TU852726
GAACTATCTTCTGTTCCCTTTGTCAACGGGGTCTTGTTCTGCAAAGTACGGCTCCAAGACGGTGGCTTTACTGAAGAGTCCTCTCGGGAGCAGGTCCAGGCTAACTGTGTGCGCTGGAGGAAGAGGTTCTCCTTCCTGTGTAAGATGAGTGCCAACGCTGGGACAGGAGTACTGGACCCCTGTGTGTGCCGGGTGTCTGTGCGCAAGGAAATGAAGGGTGGAAAGACCTTTGCAAAGCTGGGTTTTGCTGACCTGAACCTGTCAGAGTTTGCTGGCTCTGGCAGCACCACGCGGCGATGTCTACTAGAGGGTTACGATACCAAGAACACCAGACAGGACAACTCCATACTCAAGGTCGTCATCAGCACACAGCTCATGTCTGGGGACCCCTGCTTTAAAACGCCACCGTCCACAGCCATGAAACTGGGCATCCAGCAGGCAGAGGCAGGGTGTCTCTACGAAGACAGGAAGGGAGGGGACACCCACACACCCTGCCTCCCCATACCAGAGCCCCCAGGgaagtgtgtgtctgttcctgaTGAGCCGAGAGCATCTGGCCACTCTAGAACATCCAGCTATGCCAGCCAACAGTCCAAAGTGTCAGGCTATAGCTCAGGTCACTCACGttcctccagcctatcagagctcaCACACAAGAGGAACCCCTCAGCGGGCTCCGCCTCCACAGGCATCGGCAGTATTCCTGAACCCAGCGTGGACCGGGGGGCTGAGAGGGAGGCCCGCTCTACACCTCCTGTCTCTGTCATCTGTTCCTGCTCCCCCGTGCCTGAACACCC

Function

NR:

description
protein FAM102B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986406.1 False 1974 mRNA 0.50 11 79548127 79579010
TU852726 True 797 TUCP 0.57 8 79548497 79569877

Neighbor

gene id symbol gene type direction distance location
LOC110530721 LOC106600560 coding upstream 40118 79387596 ~ 79508009 (+)
ncana LOC106569686 coding upstream 200673 79210727 ~ 79347454 (+)
slc25a42 LOC106569683 coding upstream 454871 79066751 ~ 79093256 (+)
armc6 armc6 coding upstream 481906 79060595 ~ 79066221 (+)
LOC110530711 LOC106569552 coding upstream 555983 78987215 ~ 78992144 (+)
LOC110530727 LOC106569674 coding downstream 8330 79587340 ~ 79596019 (+)
LOC110530686 LOC106569672 coding downstream 110257 79689267 ~ 79713549 (+)
LOC110530734 LOC106569665 coding downstream 454614 80033624 ~ 80036953 (+)
LOC110530735 LOC106569664 coding downstream 492553 80071563 ~ 80074536 (+)
acsm3 acsm3 coding downstream 733515 80312525 ~ 80327493 (+)
G751090 NA non-coding upstream 16977 79529741 ~ 79531150 (+)
G751089 NA non-coding upstream 18821 79529088 ~ 79529306 (+)
G751078 NA non-coding upstream 29062 79515752 ~ 79519065 (+)
G750993 NA non-coding upstream 37294 79508385 ~ 79510833 (+)
G751030 NA non-coding upstream 144075 79402258 ~ 79404052 (+)
G751110 NA non-coding downstream 24748 79603758 ~ 79604084 (+)
G751111 NA non-coding downstream 25906 79604916 ~ 79606547 (+)
G751119 NA non-coding downstream 47612 79626622 ~ 79627210 (+)
G751120 NA non-coding downstream 50978 79629988 ~ 79630549 (+)
G751121 NA non-coding downstream 60669 79639679 ~ 79640870 (+)
G750935 NA other upstream 350749 79195270 ~ 79197378 (+)
G750854 NA other upstream 568146 78979230 ~ 78979981 (+)
G750533 LOC106569543 other upstream 750579 78797142 ~ 78797548 (+)
G749663 tcf3 other upstream 1302512 78244210 ~ 78245615 (+)
G752357 NA other downstream 1052300 80631310 ~ 80634052 (+)
G752398 NA other downstream 1162594 80741604 ~ 80741945 (+)
G753205 LOC106569572 other downstream 1907810 81486820 ~ 81487610 (+)
sdhc LOC106569582 other downstream 2204339 81783282 ~ 81802285 (+)
G753337 NA other downstream 2343152 81922162 ~ 81931491 (+)
G751108 NA non-coding downstream 7729 79577606 ~ 79577817 (+)

Expression


Co-expression Network