XLOC_002590


Basic Information

Item Value
gene id XLOC_002590
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 7981119 ~ 7983744 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005749
GCATTTTATCATAATCTGAGAGATTATAAATTAAATGGAGTTAAGATTGTAGACTAGGAAGTAGATGATTAAGCattatgaagtcagaattttaaaGATCGGTTTTCTAAATGGtcctaaaaatatttagtaagcATTTAGGATTAATCCAAAAGGTGCATTCATTAATATAAGCGGGTTCCTGTAGATCTATCTGCAAATAAATGCTTTCGGGTAGAGATTTAATTCAGTTTACTCAACTGAAATGACTCCTAAAGCCTGGCCAATGTAGGGGGCCATTCACACAATGCATTTTTCCATAACAATGGGCTACTTTTTCATTGCGCTTGAGTGACCATTACTCATCTTGCCTTGCATGAGTGTCATGTTTTTGAGACACTGTTTCTATAAAAGTTTCAGCTTTTACATGCAACTTCATACACTGGTCAGATTTAAGCTATTGAACTGGTCAGAACTACTTGAAGGCAGGGCAAGCTTCTGTTGGCTTGACAGATTTTTATTTGATGGCAACATTGCAAACGAGGTGCTCATGGTGGCTTTGTGTGCATACCCTAAATAGTGTAACATTTCTTCAATTATCACACCTAgctctttaaaaataataattccctGAGGGCTGCACCCACGTTTTAGATGCAAAATGCATTCTGTAAAAATGGCCCCTAGGACCACATCTATTGCAAAAATGACATGAGAGTGCGTAAACCTTTAAAAAAGTAAACTACAAAACTACAGTGTACTGACAATAAACACTGGGTTCCCATGGGTAATACAAATTGAAATGGTCTGTCCTGTACGTTAAAAGTTCCGTTTTTTTCCACAAAGTCATGGAATGACAGGGAAGTTTTGTTTCATGCCCATTTTTATGATTACTTGGTTGGGCCATATTTTTTAGCTCCATTTTCTTTTTCATGCTCATAACCTGACAGTCACTTTAGTCagtttaagtcacTAGGTTTTACATCAGATATTTAAGGCGGAGTACTTCACAGCCAAAATCTGAGGTAAATTATCGGTTGTTCTCATAGTAGGTGTTAATGCCCTGCAAAATGATATgcatccttaaaaaaaaaacgttttagtgTTATTATAATTGTAAAGTTGATGTATAAGCACATCATCGACCTGTTTTGTTCACTACAtgtcatggaaattcagctttatACAAGGAAAATAAGGGAAATTGGTATTTGTTTTAAAGTGGGAACCCTGTAAACAAGATGTGATCATGTCTTAAGTGTGGATACTATTGTAGTTAAAGTTCACAGTTATTGTTCTTGATAAAGGGCCAAGTGAAAATTAGGGATATTTTCAGAAAACGTGTTAAAATGGGTAAAATTCACTAGAATAAAACTTTTACCTACTGtggtttttaaaatgttgttctATAATTCTGGTTTGCATTAAGTAAAGAGTTTTACAATCAAATATTGGTTCCCAAAGACTTCTTTCAATGCTACCAAAAGCAGGACTAA

Function

GO:

id name namespace
GO:0036091 positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress biological_process
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress biological_process
GO:0030234 enzyme regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005749 True 1475 lncRNA 0.35 2 7981119 7983744

Neighbor

gene id symbol gene type direction distance location
XLOC_002588 osbp2 coding downstream 6964 7916720 ~ 7974155 (-)
XLOC_002587 slc35e4 coding downstream 67528 7901012 ~ 7913591 (-)
XLOC_002585 BX294661.1 coding downstream 88435 7870627 ~ 7892684 (-)
XLOC_002586 NA coding downstream 95079 7883753 ~ 7886040 (-)
XLOC_002584 inpp5ja coding downstream 122566 7831439 ~ 7858553 (-)
XLOC_002591 atp6v0a2a coding upstream 5002 7988746 ~ 8033468 (-)
XLOC_002592 nfkbil1 coding upstream 50944 8034688 ~ 8041948 (-)
XLOC_002593 zgc:136254 coding upstream 61620 8045364 ~ 8046764 (-)
XLOC_002594 si:ch211-251f6.7 coding upstream 67872 8051616 ~ 8053753 (-)
XLOC_002595 si:ch211-251f6.6 coding upstream 75106 8058850 ~ 8079830 (-)
XLOC_002575 BX537303.2 non-coding downstream 468996 7512008 ~ 7512123 (-)
XLOC_002572 NA non-coding downstream 727221 7238244 ~ 7253898 (-)
XLOC_002571 NA non-coding downstream 919582 7050325 ~ 7061537 (-)
XLOC_002602 NA non-coding upstream 634974 8618718 ~ 8621543 (-)
XLOC_002603 NA non-coding upstream 655177 8638921 ~ 8657677 (-)
XLOC_002605 BX571955.1 non-coding upstream 692146 8675890 ~ 8677828 (-)
XLOC_002606 NA non-coding upstream 857954 8841698 ~ 8858568 (-)
XLOC_002609 CU694950.1 non-coding upstream 1032977 9016721 ~ 9016837 (-)

Expression


Co-expression Network