acsm3 (acsm3)


Basic Information

Item Value
gene id acsm3
gene name acsm3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 80312525 ~ 80327493 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986427.1
CTCCGCGCAAAGCATCCTGGGGCAATGATATCCCATCTGATCACATCTGAGGAACCGACGTTACAGTGTAGCGGGATCAGCTGTATCTGCAAATACACCTGATTTTAATAGTTCACCCATTCAGGTCATGGAATGAACAGATCTCTCCCTGTGTCGGAGTTGAGCCCTAGTATTCCTTCCTTTTCACTCGACCCTTTATGGAGACATTTCTTGGGCGCCATTCCTTATTTTCAGcccgcagacagagcaacataaaccGCAAACAACACGACGATTTGagagATGAGGGCCATTGGGAAAGTGTCATTTCAACTGAAGGCACTCAGTATATTCCCAAGTAACTTTAAATGTCAGATCCGTGGACATAGGGTATCTCCTCCTCAAAACTTTACTGGCTATGAGAGTATCAAACAACAATACAGCCCCCAGATACCTGAGTACTTCAACTTTGCAGAAGATGTGCTTGATGTGTGGGCAGAGAAAGAAAAGaaaggagagaaaggatcTAACCCTGCCTTCTGGTGGGTGAATGACAGAAAGCAGGAGGTGAGGTGGAGTTTTGAGGAGCTGGGCTTCCACTCCAGAAGACTGGCCAATGTTCTGTCAGGTGCCTGTGGTCTCAACCAGCAGGACAGGGTGTTTCTGGTACTACCCAGGGTTCCAGAGTGGTGGCTCGTCAATGTGGCCTGTCTCAGAACCGGAACAGTGCTGCTGCCAGGCACCTCTCAGATGACAGCCAGGGACATCCTCCACCGGCTGCAGACCTCTGGGGCCCGCTGTGTCATCACAGACGAGTCCCTGGCCCCCCTGCTCGATGCCGTGGCCTCTCAGTGCTCCAGCCTGCAGCACAAAATACTGGTGTCCCCCACCAAGAGAGAGGGCTGGAAGAACTTTGGAGATCTGGTGAGGAACGCATCCAGCGACCATGAGTGTGTGAAGACTCGCAGTGATGACCCTATGACCATCTTCTTCACCAGTGGGACCACAGGGTCACCTAAGATGACCCAACACAGCCACAGTAGCTATGGGATAGGCCTCACTGTCAACGGAAGGTACTGGTTGGACCTGACGGAAAGGGATGTCTTGTGGAACACATCTGATACAGGCTGGGCCAAGTCTGCCTGGAGCAGTGTCTATGCCCCCTGGATCCAGGGAGCCTGTGTCTTCATCCACCATATGCCCCGCTTCGACAGTCACACTGtactggagACTCTCTCCAGCTACCCCATATCCACATTCTGCACGGCTCCAACTGCTTATCGAATGCTAGTGCAAGAGGACATGTCCAGTTATAATTTCAGCAACTTGCAGCATTGTTTGTGTGCTGGTGAACCCATCAACCCAGAGGTGatggagaagtggaggagtgCCACTGGACTGGACATCTACGAAGGATATGGACAAACTGAAACTGTACTGATAGCTGGTACTTTTAAGGGCATGAAGATCAAAGCCGGGGCCTTTGGGAAGGCTTCACCAGAGTATGATGTGCAGGTCGTAGATGAAGCCGGTAATGTCTTgcccagaggagtggaggggaaccTTGGTATCAGAGTGAAACCACACAAGCCCTTTTCCCTGTTTACTGAATACACAGGGGACCCTGATCGAACAGCAGAGTGCTATGTTGGGGACTTCTACCTGACTGGTGACAGGGGTGTCATGGATGAGGACGACTACTTGTGGTTCGTGGGTCGAGCTGATGACGTCATCCTGTCAGCTGGGTACCGTATTGGTCCATTTGAGGTGGAGAACGCTTTGATTGAACACCAGGCTGTGGCTGAGTCAGCCGTGGTCAGCAGCCCTGACCCTATCAGAGGAGAGGTTGTGAAGGCATTTGTTGTTCTAACAGCAGAGTACAAATCTCAAGATCAAGATCAACTTAAGAAAGAATTACAGACGTATGTGAAGAGAGTTACTGCACCGTACAAGTATCCACGCAAGGTAGAGTTTGTGGAACAGCTACCAAAGACAGTTAGTGGTAAAATCAGGAGAGTGGAGCTCAGGAACAAAGAATGGGGAAGATCCTGAATGGGTGGAGGATCATCTGTTGAACCTTCTTATTGGAACAGTGAAGAGAATGTAGGCTGTTTCTTTCTTTTCCTACTAGCACCGAATTTGCTGATAACTACTTAATTGAGGAAAAATGTCCTTACTGTGAtggtgatatgtggttgtcccacctagctatcttaagatgaatgcactaactgtaagttgctctgcatAAGAGTGACTGGTAAATTACTACATTTTAAATGTGAAATGAATCAAAACATCTGTGAAATGAATGGCACATGTCTTTTTCTATTTGTCTCCATCATTGCATGAATAGCTACTTCACACTTGTATGAATGAAAGAAACTTGAAGAATAAACTTTTGATTCAGTATAttacagca
>XM_036986428.1
CTCCGCGCAAAGCATCCTGGGGCAATGATATCCCATCTGATCACATCTGAGGAACCGACGTTACAGTGTAGCGGGATCAGCTGTATCTGCAAATACACCTGATTTTAATAGTTCACCCATTCAGGTCATGGAATGAACAGATCTCTCCCTGTGTCGGAGTTGAGCCCTAGTATTCCTTCCTTTTCACTCGACCCTTTATGGAGACATTTCTTGGGCGCCATTCCTTATTTTCAGcccgcagacagagcaacataaaccGCAAACAACACGACGATTTGagagATGAGGGCCATTGGGAAAGTGTCATTTCAACTGAAGGCACTCAGTATATTCCCAAGTAACTTTAAATGTCAGATCCGTGGACATAGGGTATCTCCTCCTCAAAACTTTACTGGCTATGAGAGTATCAAACAACAATACAGCCCCCAGATACCTGAGTACTTCAACTTTGCAGAAGATGTGCTTGATGTGTGGGCAGAGAAAGAAAAGaaaggagagaaaggatcTAACCCTGCCTTCTGGTGGGTGAATGACAGAAAGCAGGAGGTGAGGTGGAGTTTTGAGGAGCTGGGCTTCCACTCCAGAAGACTGGCCAATGTTCTGTCAGGTGCCTGTGGTCTCAACCAGCAGGACAGGGTGTTTCTGGTACTACCCAGGGTTCCAGAGTGGTGGCTCGTCAATGTGGCCTGTCTCAGAACCGGAACAGTGCTGCTGCCAGGCACCTCTCAGATGACAGCCAGGGACATCCTCCACCGGCTGCAGACCTCTGGGGCCCGCTGTGTCATCACAGACGAGTCCCTGGCCCCCCTGCTCGATGCCGTGGCCTCTCAGTGCTCCAGCCTGCAGCACAAAATACTGGTGTCCCCCACCAAGAGAGAGGGCTGGAAGAACTTTGGAGATCTGGTGAGGAACGCATCCAGCGACCATGAGTGTGTGAAGACTCGCAGTGATGACCCTATGACCATCTTCTTCACCAGTGGGACCACAGGGTCACCTAAGATGACCCAACACAGCCACAGTAGCTATGGGATAGGCCTCACTGTCAACGGAAGGTACTGGTTGGACCTGACGGAAAGGGATGTCTTGTGGAACACATCTGATACAGGCTGGGCCAAGTCTGCCTGGAGCAGTGTCTATGCCCCCTGGATCCAGGGAGCCTGTGTCTTCATCCACCATATGCCCCGCTTCGACAGTCACACTGtactggagACTCTCTCCAGCTACCCCATATCCACATTCTGCACGGCTCCAACTGCTTATCGAATGCTAGTGCAAGAGGACATGTCCAGTTATAATTTCAGCAACTTGCAGCATTGTTTGTGTGCTGGTGAACCCATCAACCCAGAGGTGatggagaagtggaggagtgCCACTGGACTGGACATCTACGAAGGATATGGACAAACTGAAACTGTACTGATAGCTGGTACTTTTAAGGGCATGAAGATCAAAGCCGGGGCCTTTGGGAAGGCTTCACCAGAGTATGATGTGCAGGTCGTAGATGAAGCCGGTAATGTCTTgcccagaggagtggaggggaaccTTGGTATCAGAGTGAAACCACACAAGCCCTTTTCCCTGTTTACTGAATACACAGTTGTGAAGGCATTTGTTGTTCTAACAGCAGAGTACAAATCTCAAGATCAAGATCAACTTAAGAAAGAATTACAGACGTATGTGAAGAGAGTTACTGCACCGTACAAGTATCCACGCAAGGTAGAGTTTGTGGAACAGCTACCAAAGACAGTTAGTGGTAAAATCAGGAGAGTGGAGCTCAGGAACAAAGAATGGGGAAGATCCTGAATGGGTGGAGGATCATCTGTTGAACCTTCTTATTGGAACAGTGAAGAGAATGTAGGCTGTTTCTTTCTTTTCCTACTAGCACCGAATTTGCTGATAACTACTTAATTGAGGAAAAATGTCCTTACTGTGAtggtgatatgtggttgtcccacctagctatcttaagatgaatgcactaactgtaagttgctctgcatAAGAGTGACTGGTAAATTACTACATTTTAAATGTGAAATGAATCAAAACATCTGTGAAATGAATGGCACATGTCTTTTTCTATTTGTCTCCATCATTGCATGAATAGCTACTTCACACTTGTATGAATGAAAGAAACTTGAAGAATAAACTTTTGATTCAGTATAttacagca

Function

symbol description
acsm3 Predicted to enable fatty acid ligase activity and fatty-acyl-CoA synthase activity. Predicted to be involved in acyl-CoA metabolic process and fatty acid biosynthetic process. Predicted to be active in mitochondrial matrix. Human ortholog(s) of this gene implicated in IgA glomerulonephritis. Orthologous to several human genes including ACSM3 (acyl-CoA synthetase medium chain family member 3).

NR:

description
acyl-coenzyme A synthetase ACSM3, mitochondrial-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01896 ACSM; medium-chain acyl-CoA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986427.1 False 2401 mRNA 0.48 15 80312525 80327493
XM_036986428.1 True 2173 mRNA 0.48 13 80312525 80327493

Neighbor

gene id symbol gene type direction distance location
LOC110530735 LOC106569664 coding upstream 237992 80071563 ~ 80074536 (+)
LOC110530734 LOC106569665 coding upstream 275572 80033624 ~ 80036953 (+)
LOC110530686 LOC106569672 coding upstream 598976 79689267 ~ 79713549 (+)
LOC110530727 LOC106569674 coding upstream 716506 79587340 ~ 79596019 (+)
LOC110530726 LOC106600567 coding upstream 733515 79548127 ~ 79579010 (+)
map6d1 LOC106569659 coding downstream 1038 80328531 ~ 80339721 (+)
LOC110530801 LOC106600593 coding downstream 570742 80898235 ~ 80924566 (+)
LOC110530803 LOC106569635 coding downstream 610929 80938422 ~ 80965389 (+)
LOC110530752 LOC106569631 coding downstream 709608 81037101 ~ 81075897 (+)
LOC110530753 LOC106600601 coding downstream 749172 81076665 ~ 81189157 (+)
G751960 NA non-coding upstream 131972 80179725 ~ 80180553 (+)
G751896 NA non-coding upstream 242171 80068912 ~ 80070354 (+)
G751886 NA non-coding upstream 259413 80052892 ~ 80053112 (+)
G751877 NA non-coding upstream 269773 80042483 ~ 80042752 (+)
G752211 NA non-coding downstream 14354 80341847 ~ 80342112 (+)
G752218 NA non-coding downstream 30013 80357506 ~ 80357708 (+)
G752220 NA non-coding downstream 34716 80362209 ~ 80362515 (+)
G752222 NA non-coding downstream 38623 80366116 ~ 80366339 (+)
ncana LOC106569686 other upstream 965077 79210727 ~ 79347454 (+)
G750935 NA other upstream 1115147 79195270 ~ 79197378 (+)
G750854 NA other upstream 1332544 78979230 ~ 78979981 (+)
G750533 LOC106569543 other upstream 1514977 78797142 ~ 78797548 (+)
G752357 NA other downstream 303817 80631310 ~ 80634052 (+)
G752398 NA other downstream 414111 80741604 ~ 80741945 (+)
G753205 LOC106569572 other downstream 1159327 81486820 ~ 81487610 (+)
sdhc LOC106569582 other downstream 1455856 81783282 ~ 81802285 (+)
G753337 NA other downstream 1594669 81922162 ~ 81931491 (+)

Expression


Co-expression Network