map6d1 (LOC106569659)


Basic Information

Item Value
gene id map6d1
gene name LOC106569659
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 80328531 ~ 80339721 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021613994.2
tacaatgacggcctaacccggacgatgctgggtcaatggtgcgcctccctatgggactcccaatcacggccggatgtgacacagcctggttAAAGAAGCCTTGTCAGAGCTGTGATGTGATTTACGTCTATACTTCAAGTTTACACCATATAGCCTCCAGCCTAATGTCAGTTTCAGGTGGATGGTCAGAGAGCCACAGCCTACATGAGTTTGATTAGTAATAATGGGTTGTGTTGTGCATTTATGGAACCCTTATGTAGACTACAGGTTTGGAATGAGAGAGAATACAGATTCCTGCTGGGCCTTTAATGAAAACACTTAACCTGAATAGCAATAGCACAGTTTTTCTCTTAAGCTTTTCTAGGTAGGCAGGCTTCCTGTGTGGATTAAGACACCTTGGATCTGGTGTGGGATATGGCTTAGAAAATGTATGTCAATGTAAGGATGAGAAATGCGTTGTATTCCGAATGATCCCATTATCCCAACTGTTACACCGAGAAGATGTAACGGCTGCTAGCTGTCTAATGTAACGataccaaacataacatcatACTAATTTTTGTGTCTtggatttacgtttactatgttacgtctagtctatgatgACAGCTTGTCGACAGCGCACTTGCTGCTCTGTTCCATCCTGGCATTCCAGAGTGGTGGCATGGAGGACAGCACGCTCGCGCAGGTTTCCAGGAACGGGCACACACAAGGCGGCACTTCTGAATGTAGCTAACATTGGATTTGTTGTGTTTGTTCCTTATTtaatttttcctcattttctttGATTAGTCTATTACTTTTTTACTTGAACCAAATCGCCATGGCTTGGCCGTGCATAAGCAGAGTGTGCTGTCTGGCTCGGTTTTGGAACCAGTTTGATAAATCCGATCTTTCATTGCCACTGACCATCCAGAATTACTCAGACATCGCCGACCAAGAGGTGCGATCCGTCACCAGGCAGGTGCCGACGGACCGGGTTCTGACGCACACCTATTCTAGTCCGGACCACGGCGGATCCCCCCAAACACCGGGAGATGCCCCGGGCACCCGGAGATCATTGAGAGGCCGGAGGGAAGCAAACTTCAAACCCCGGGAGGACTACCACCGACCCGGCGTGCCGTTCTCGAGTGTCACCCAGTACAAGCAGGATTACAAACCCTGGCCTATTCCGAAGAAGGAGCATTTCCCCTGGATTAGCAATTGTGGAAAAGGGGGCACCGTTGGTTCGGATAGCCCAGTAAACAGTTACCCCAATGCGAGCGAGACgagaggggagacgggggagagagaggagctgggcaTGAGGTGGGGGGAGCAGGGGACCGGAACAGCTCAAAGCTCTTACAGACAGGAGTACCGGCCTTGGACAGGGGCAAGACCGGCCAAGACCACTAGGAAACAACGCCCCCCTGCCCCGTACGCCAGCCCCCGGTCGGGGGTCTCCCACCTCCCCAATGAGACCAGCTACCAGGCCGCCTACAGCGGAGCCGGGGAGGCTTTCAGACACACAGAGCTTCACCAGAGGGACCACAataccaccacctccaccgcTGGGCTGCAGgccaccatctccactgtccccaaGGCCCCTGTAACCCTACTCCAGCCTTCCTCCACCACAACCACCCCTATCATCAGCACCGGCCTCCAGCAGAGCTGCCTGCCAGAGAGACCCAACCTCAGTATAGGAACCATGGGAGAGGAGCAGTTGGTGAGGACCAAGCTCTCTCCCAACCCCTCTGCAGTGTTTCAAAGCAGATCTAGGATCTTCAACATATGACAGACGTTCCAAACTATTCTACTGGTTACCGGGAGACCAAAGAACCAATGAGGGGAATGTTCTCTGTCCATTCCACACTACAACAAAATCTATGCAGGGAATGTACAGCTTAATGTAACCAGAAAGGAAAAAACCCTGTACAGCTTAACAGTGAAGTGAATGACAAACCAGATGTCACAAAACAATTTTACAATCCTGTTCTATTGCTATGAAAATCGTATATATGCATGTAACACGCTAGTTTGAAGTCGAGCTTCTTTTGCAGTATTAGACACTCCAAGACAACATGGCTGCTctgtaatgtgtgtttgtgtgtactgtatgtatatgtatgtgcaCCTGTTGAGATGGAATGATTTGTGTTTGATCTTTTCCTGTATATACTGTTGGATCTATTGAAATGACAAGGAGACGACTTTTTGTGAAATTTATGCTCAAACTGCACTTAGTCCAGAAAGTAAGGTGTTCCTTCGATCTCTGCAAGTATTTTATGAACAGAAACAAAAACATATATTCATACATTTTTATTCAATTAGGTAACTATTTTGAGAAAGTAATTGTGCCGGTGTTTACGTTCATTTTGTAAATCTGTTTAAGAAACAAAAAACTGTTAAATATTAaatgatgtacagtatattacaatAAAAGAATATCAGGTTCTTAACACTATCA
>TU853898
GCCTTGTCAGAGCTGTGATGTGATTTACGTCTATACTTCAAGTTTACACCATATAGCCTCCAGCCTAATGTCAGTTTCAGGTGGATGGTCAGAGAGCCACAGCCTACATGAGTTTGATTAGTAATAATGGGTTGTGTTGTGCATTTATGGAACCCTTATGTAGACTACAGGTTTGGAATGAGAGAGAATACAGATTCCTGCTGGGCC

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: MAP6 domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021613994.2 False 2455 mRNA 0.47 3 80328531 80339721
TU853898 True 207 lncRNA 0.43 1 80328628 80328834

Neighbor

gene id symbol gene type direction distance location
acsm3 acsm3 coding upstream 1038 80312525 ~ 80327493 (+)
LOC110530735 LOC106569664 coding upstream 253998 80071563 ~ 80074536 (+)
LOC110530734 LOC106569665 coding upstream 291578 80033624 ~ 80036953 (+)
LOC110530686 LOC106569672 coding upstream 614982 79689267 ~ 79713549 (+)
LOC110530727 LOC106569674 coding upstream 732512 79587340 ~ 79596019 (+)
LOC110530801 LOC106600593 coding downstream 558514 80898235 ~ 80924566 (+)
LOC110530803 LOC106569635 coding downstream 598701 80938422 ~ 80965389 (+)
LOC110530752 LOC106569631 coding downstream 697380 81037101 ~ 81075897 (+)
LOC110530753 LOC106600601 coding downstream 736944 81076665 ~ 81189157 (+)
LOC110530754 NA coding downstream 856446 81196167 ~ 81200421 (+)
G751960 NA non-coding upstream 147978 80179725 ~ 80180553 (+)
G751896 NA non-coding upstream 258177 80068912 ~ 80070354 (+)
G751886 NA non-coding upstream 275419 80052892 ~ 80053112 (+)
G751877 NA non-coding upstream 285779 80042483 ~ 80042752 (+)
G752211 NA non-coding downstream 2126 80341847 ~ 80342112 (+)
G752218 NA non-coding downstream 17785 80357506 ~ 80357708 (+)
G752220 NA non-coding downstream 22488 80362209 ~ 80362515 (+)
G752222 NA non-coding downstream 26395 80366116 ~ 80366339 (+)
G752223 NA non-coding downstream 26942 80366663 ~ 80366944 (+)
LOC110530726 LOC106600567 other upstream 758654 79548127 ~ 79579010 (+)
ncana LOC106569686 other upstream 981083 79210727 ~ 79347454 (+)
G750935 NA other upstream 1131153 79195270 ~ 79197378 (+)
G750854 NA other upstream 1348550 78979230 ~ 78979981 (+)
G750533 LOC106569543 other upstream 1530983 78797142 ~ 78797548 (+)
G752357 NA other downstream 291589 80631310 ~ 80634052 (+)
G752398 NA other downstream 401883 80741604 ~ 80741945 (+)
G753205 LOC106569572 other downstream 1147099 81486820 ~ 81487610 (+)
sdhc LOC106569582 other downstream 1443628 81783282 ~ 81802285 (+)
G753337 NA other downstream 1582441 81922162 ~ 81931491 (+)

Expression


Co-expression Network