XLOC_025902 (sco1)


Basic Information

Item Value
gene id XLOC_025902
gene name sco1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 62196672 ~ 62203711 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050768
ACATCATCCTCAAGCAGACCTCAGATCAGTTCGTGTCAGCGTGACCGTTAATATCCGCGGTTGTATAATCCTGACAGCTGATGCCGGGTCAGTGGTTTGTATGCGGGGCTCAGATGGTCACTTCCGCGTAGCTGATGTGCTGACTGTTAGCACCATGAGTTTAGCAGCAGTTTTGGGTTTAAAGAGTGTAAGATGTCAGATGTTCAGGTTAGTGTGTGGCAGTAAAACATGTAATGGTGTTTTGAGTCTGCGCAGTGCGGAGGGAAGAGCTGCGCGCGCATGTGCAGTGCGCTCACACAGCAACACATCGtTATGGCGGTGTCGGACGGCTCCATGTGTGTCTGTTCTGCACATGCGAACACTTTCCACTCTTCCTCCACCTCCATCATCCAGCGGAGACAAACCCAGCAGCCGGAAGACTGGACCAGTGACATGGAAATCTCTCGCTGTCACGTTTGCGCTGGGAGGAGGCCTGCTTCTAGCAATGAAATACTTCAAGAGGGAAAAAGAGGAATTGTttgagaaagaaagaacaaagtcGATAGGGAAGCCAGCTCTCGGAGGCCCGTTTTCACTCCTCGACCACAATAATAAACCCAGCCGGAGTGAGGATTTCCTCGGCCGCTGGCTGCTGATCTACTTCGGCTTCACGCACTGTCCAGACATCTGCCCTGATGAGCTGGAGAAAATGATCGAGGCCGTCGATGAGATCGACAACATTGACACTCTCCCAGACGTGACTCCGCTCCTGATCAGCATTGACCCGGAGAGAGACACCCCTGAAGCGCTGGCAGCTTATGTTAAAGATTTCTCCCCCAAGCTCATCGGTCTGACTGGCACGACGGCCCAGATTGAGCAGGTGTCCCGAGCCTACAGAGTTTACTACAGCCAGGGCCCTAAAGATGAAGACAACGACTACATCGTGGATCACACCATCATCATGTACCTGGTGGGACCCGACGGCCAGTTTCTGGAGTATTACGGACAGAACAAGAAGTCCTCGGAGATCGCCTCATCCATCGCATCCTACATGAGGAAGCACAAATACGGCAAATGAGGACATTACTCCTGTCAtcaatcatatttattttcagagCCACTCTGCTGGAGCATTCCCCGTTTCCCCATACTGCAGTGATGTTCAGAGCGTTCACATTCAATAAAGTGTGTTTGGGTTG

Function

symbol description
sco1 Predicted to be involved in mitochondrial cytochrome c oxidase assembly. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human SCO1 (synthesis of cytochrome C oxidase 1).

GO:

id name namespace
GO:0008535 respiratory chain complex IV assembly biological_process
GO:0006825 copper ion transport biological_process
GO:0033617 mitochondrial cytochrome c oxidase assembly biological_process
GO:0006878 cellular copper ion homeostasis biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005507 copper ion binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-140909-1 Predicted to be involved in mitochondrial cytochrome c oxidase assembly. Human ortholog(s) of this gene implicated in cytochrome-c oxidase deficiency disease. Orthologous to human SCO1 (synthesis of cytochrome C oxidase 1).

Ensembl:

ensembl_id ENSDARG00000067593

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050768 True 1178 mRNA 0.51 7 62196672 62203711

Neighbor

gene id symbol gene type direction distance location
XLOC_025901 noxo1a coding upstream 27612 62161249 ~ 62169060 (+)
XLOC_025900 GID4 coding upstream 46844 62140077 ~ 62149828 (+)
XLOC_025899 drc3 coding upstream 57717 62126981 ~ 62138955 (+)
XLOC_025898 NA coding upstream 134834 62054694 ~ 62061838 (+)
XLOC_025897 rai1 coding upstream 143358 62000822 ~ 62053314 (+)
XLOC_025903 znf1024 coding downstream 2147 62205858 ~ 62209351 (+)
XLOC_025904 NA coding downstream 4123 62207834 ~ 62250574 (+)
XLOC_025905 BX470259.3 coding downstream 15447 62219158 ~ 62226590 (+)
XLOC_025906 zgc:174624 coding downstream 67609 62271320 ~ 62276177 (+)
XLOC_025907 zgc:173575 coding downstream 86313 62290024 ~ 62297374 (+)
XLOC_025429 BX649540.1 misc upstream 31947636 30248739 ~ 30249036 (+)
XLOC_025890 NA non-coding upstream 812480 61357205 ~ 61384192 (+)
XLOC_025891 NA non-coding upstream 819617 61368489 ~ 61377055 (+)
XLOC_025888 NA non-coding upstream 844666 61338539 ~ 61352006 (+)
XLOC_025908 NA non-coding downstream 100331 62304042 ~ 62306549 (+)
XLOC_025913 NA non-coding downstream 165013 62368724 ~ 62384693 (+)
XLOC_025914 NA non-coding downstream 220624 62424335 ~ 62542931 (+)

Expression


Co-expression Network