LOC110530801 (LOC106600593)


Basic Information

Item Value
gene id LOC110530801
gene name LOC106600593
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 80898235 ~ 80924566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986452.1
TGATTTCGGTTCGCAGTTACCACTGCCCTGTAGAAGCTTGTCCGCCATCACTGCAAGGAGAAGCTAGGCAAAAATTGGGAGAAGAGGAGTGACAACAACAGCGCAGAGAGACGGACCCAAGCCCAAGGGGAAGGTCGAGGGGGATCTTTACCACTTTCCATTTGCAGGCATCCCTGTTGCAGCCTAAAATAGTATTTCATGATAACGTAGAGAAGACGGACGTACTAACTAATCATGTCCAACCTCAAAGGCGGCGTCAAGAAGGACACCAAGATGAGGATAAGAGCCTTTCCTATGACAATGGATGAGAAGTATGTCAACAATATCTGGGACCTTCTGAAGAACGCTATCCAGGAGATCCAGAGGAAGAACAACAGCGGGCTGAGCTTCGAGGAGCTCTACAGGAACGCCTACACAATGGTGCTGCACAAACACGGCGAGAAGCTCTACACGGGCCTGCGCGAGGTTGTCACCGAGCACCTCGTCAACAAAGTACGGGAAGATGTCCTAAACTCGTTAAACAATAACTTTCTGCAGACTTTGAATCAAGCGTGGAACGACCACCAGACAGCCATGGTCATGATCAGAGACATCCTGATGTACATGGACCGGGTGTACGTGCAGCAGAACAACGTGGAGAACGTCTACAACCTGGGCCTGATCATCTTCAGAGACCAGGTGGTGCGCTACGGCTGCATCCGAGACCACCTGCGACAGACCCTGCTGGACATGATCGCacgggagaggaaaggagaggtggtGGACAGGGGAGCGATCAGGAACGCCTGTCAGATGCTGATGATTCTGGGTCTGGAGGGTAGGTCTGTGTACGAGGAAGACTTTGAGTCCCCCTTCTTAGAAATGTCTGCAGAATTCTTCCAGATGGAGAGCCAGAAGTTCCTAGCGGAGAACAGTGCCAGTGTGTACATCAAGAAGGTGGAGGCCAGGATCAACGAGGAGATAGAGCGGGTGCTGCACTGCCTGGACAAGTCCACAGAGGAGCCCATCGTCAAGGTGGTGGAACGGGAGCTCATCTCCAAACACATGAAGACCATCGTGGAGATGGAGAATTCCGGCCTGGTTCACATGCTCAAGAACGGCAAGACAGAAGACCTGGGCTGTATGTACAAGCTGTTCAGCCGTGTGCCTAACGGCCTGAAGACCATGTGTGAGTGTATGAGCTCCTACCTGAGGGAGCAGGGCAAGGCTCTGGTGTCAGAGGAGGGAGAGGGCAAGAACCCTGTCGACTACATCCAGGGCCTGTTGGACCTGAAGACGCGGTTTGACCGTTTCCTCCTGGAGTCGTTCAACAACGACCGGCTCTTCAAGCAGACCATCGCCGGAGACTTTGAGTACTTCCTCAACCTCAACTCCCGCTCCCCAGAGTACCTCTCCCTCTTCATCGACGACAAGCTCAAGAAGGGAGTCAAAGGGCTGACAGAACAGGAGGTGGAGTCCATCCTGGACAAGGCCATGGTTCTTTTCCGGTTCATGCAGGAGAAGGATGTGTTTGAGAGGTACTACAAACAGCACTTGGCCCGGAGGCTGCTCACCAACAAGAGTGTCTCTGACGACTCTGAAAAGAACATGATCTCTAAGCTAAAGACTGAGTGTGGCTGTCAGTTCACCTCTAAACTGGAAGGGATGTtcagagacatgagcatctccaACACCACCATGGACGAGTTCAGACAACACCTACAGTCCACGGGGCTGTCTCTAGGGGGCGTCGACCTCACAGTAAGAGTACTCACCACTGGCTATTGGCCCACACAGTCGGCCACGCCCAAATGCACCATCCCCCCCTCCCCAAGACACGCCTTCGAGGTCTTCAGAAGGTTCTACTTGGCCAAACACAGTGGCAGACAGTTGACCCTCCAGCACCACATGGGCTCAGCCGACCTCAACGCTACCTTCCACGGCCCCATCAAGAAGgAGGATGGTTCggaggtgggagtgggaggagCCCAGGTGACGGGCTCTAACACCAGGAAGCACATACTGCAGGTCTCCACCTTCCAGATGACCATCCTCATACTCTTCAACAACAGAGAAAAGTCCACGTTTGAGGAGATTCAGCAGGAGACGGATATACCGGAGAGGGAGCTGGTGCGAGCGCTGCAGTCGCTGGCCTGCGGGAAGCCCACCCAGCGCGTCCTCACCAAGGAGCCCAAGTCCAAGGAGATCGAGAACGGCCACGTGTTTACAGTCAACGATCAGTTTACCTCCAAGCTGCACAGAGTCAAAATACAGACggtcgcTGCTAAGCAGGGCGAGTCGGACCCAGAGAGGAAGGAGACGCGGCAGAAGGTGGATGACGACAGGAAGCATGAGATCGAGGCGGCCATCGTCCGCATCATGAAGTCCAGAAAGAGGATGCAGCACAACGTCCTGGTAGCAGAGGTCACCCAGCAGCTGAGGGCCCGGTTCCTCCCCAGCCCCGTGGTCATTAAGAAACGCATTGAAGGACTCATAGAGAGAGAATATTTGGCACGGACGCCTGAGGACCGCAAAGTCTACACCTACGTTgcataagaggagaggagaggagaggagcattgTGGGAGAGGAGAAATGGATTGAGGGGAGGCTTTTTTGGAGGGGGAGTGTTGTGCGCATGGACTGGGAAGTTCCTTTTTAAAAGATAAATGCTGGGAAGCTGACTCCTCCCTTTACAAAAATGACAAAAACCAGAAGTAAATggcaaaaaaattatacaaaaaaaaaaaatccatgaagtgttgtagatttttttttatcaggCCAACTACTATTACTCTTGCTCCCTGTGAGAATTTCAACATGGATGGATTCCAGCTTTTCACCGTTTTACCCTTGTAGAGATCGACCTTAAAAGAATCCCTTGGGAAAGATGTGAATGCACCACTTTTTTGTTTTGGTTTTCAATACTGTATAAAAATGAGAATGAATTATTAAAAACAAAACAGCAAATGTGGATtgctaacaaaaataaataaaaaaatattgaata

Function

NR:

description
cullin-3-like

GO: NA

KEGG:

id description
K03869 CUL3; cullin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986452.1 True 2992 mRNA 0.51 16 80898235 80924566

Neighbor

gene id symbol gene type direction distance location
map6d1 LOC106569659 coding upstream 558514 80328531 ~ 80339721 (+)
acsm3 acsm3 coding upstream 570742 80312525 ~ 80327493 (+)
LOC110530735 LOC106569664 coding upstream 823702 80071563 ~ 80074536 (+)
LOC110530734 LOC106569665 coding upstream 861282 80033624 ~ 80036953 (+)
LOC110530686 LOC106569672 coding upstream 1184686 79689267 ~ 79713549 (+)
LOC110530803 LOC106569635 coding downstream 13856 80938422 ~ 80965389 (+)
LOC110530752 LOC106569631 coding downstream 112535 81037101 ~ 81075897 (+)
LOC110530753 LOC106600601 coding downstream 152099 81076665 ~ 81189157 (+)
LOC110530754 NA coding downstream 271601 81196167 ~ 81200421 (+)
LOC118965638 NA coding downstream 432393 81356959 ~ 81365769 (+)
G752456 NA non-coding upstream 22551 80873305 ~ 80875684 (+)
G752407 NA non-coding upstream 39035 80767695 ~ 80859200 (+)
G752442 NA non-coding upstream 77222 80819597 ~ 80821013 (+)
G752424 NA non-coding upstream 131595 80766371 ~ 80766640 (+)
G752421 LOC106569642 non-coding upstream 135307 80760446 ~ 80762928 (+)
G752480 NA non-coding downstream 24121 80948687 ~ 80949249 (+)
G752736 LOC106569633 non-coding downstream 41670 80966236 ~ 80968434 (+)
G752738 NA non-coding downstream 46084 80970650 ~ 80970868 (+)
G752745 NA non-coding downstream 51256 80975822 ~ 80976084 (+)
G752757 NA non-coding downstream 64406 80988972 ~ 80989744 (+)
G752398 NA other upstream 156290 80741604 ~ 80741945 (+)
G752357 NA other upstream 264183 80631310 ~ 80634052 (+)
LOC110530726 LOC106600567 other upstream 1328358 79548127 ~ 79579010 (+)
ncana LOC106569686 other upstream 1550787 79210727 ~ 79347454 (+)
G750935 NA other upstream 1700857 79195270 ~ 79197378 (+)
G753205 LOC106569572 other downstream 562254 81486820 ~ 81487610 (+)
sdhc LOC106569582 other downstream 858783 81783282 ~ 81802285 (+)
G753337 NA other downstream 997596 81922162 ~ 81931491 (+)
G754927 NA other downstream 2331173 83255739 ~ 83257866 (+)
G755286 NA other downstream 2704806 83629372 ~ 83629738 (+)

Expression


Co-expression Network