LOC110530757 (LOC106569574)


Basic Information

Item Value
gene id LOC110530757
gene name LOC106569574
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 81621134 ~ 81632686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986479.1
GTCGTGATCATGAATCTGGGTGATGGTTTATGAATGATGGTGATGACAGCATCCTCCTCGACTGTCGCTCCCATGTTCTAACACCTGCGCAGCTGCCGGTAATTCATACAATTTTATCTGAAGCGGATCGCTGCTGGCTTCACTGTCTATACCCAACGGACGAACTGCCACCATTTTAAACTCTTTGAAGACAAACTTGGAAAATATAAGAATATGCTATTTGTGAGCACGCTGTTTATTGAGGATTACAGACATCTAAAAAGCAGAGTCGTTTGGTTGGGGTTGCCTTTGTTTCCTGTTGAGAGAGTAGAGGACTGAACTGATGCTGCGTCGAACACCCTCCTCATCAGCAGAGCCGAtgataaacattaaaaaaattgTCGGATGATCGAACCTGAGCGGAAGATCTCCGAGGCTCGCTCTTGGACCATCCACTCATCTGTAAGGtcctttataaataaataaataaggggACGGGATATTGTTTTAATAGGATAAGGCAATTACCAGATGAAACCCCACTACAGGACCTCAACGTAAAGAACCGGATTAATCCGCCAATAACCACTGGACAGAGTCTGCCGTAGGGGAGATATCAAAAACTCAGTAACACACACCATCATTCCTGATGGCGCTTGAAGACTCTTCCTTCCCCTCGCGGCCAgagtccctctctctgcctgtggtGGAGAAAGGGAAGGGACCAGTGGAAGAGGCTAGCGAGGTGACGGCCTCCACCGGAGTGTTTGATGTGTCTGAGGATCTGGGCCATGTGGTTACCACGGATACCGCCCAGCCTGGCGTTAACAGATCATGGAAGTCCAAGTTGGCAGAGAGGCAGGCCAATGCAGCATCCGAGGAGTACGTTAAGAAGCTGCCTCgggtggtggagaaggagaggggtagatTTGGCTGGGCCAAGAGACGTAAGACTCAGCGCTATGTGGAGAAGAATGGTCGCTGTAACGTTTCACACGGCAACATGAGGGAGACGTACCGTTATCTGACAGATATCTTCACCACGCTGGTGGACCTCAACTGGCGCTGCTCTCTCTTCGTCTTCGTCATGGCCTATGCCATCACCTGGCTCTTCTTCGGGGCCATTTGGTACCTGATAGCCTACCTCCGAGGGGATCTAGATCATCTGGAGGATGAGACATGGACACCGTGCGTCAACAACGTGAACGGCTTCATCTCtgccttcctcttctccatcgAGACAGAGACCACCATTGGTTACGGCCACCGTGTCATCACTGACCAGTGTCCAGTGGGCACCATGCTGCTCCTGCTCCAGGCCATACTAGGATCTATGGTCAACGCCTTCATGGTGGGCTGTATGTTTGTGAAGATCTCTCAGCCCAATAAGCGCGCGGAGACCCTGGTGTTTTCTAAGAATGCAGTGATCTCTCTGAGAGACGACAGACTGTGTCTGATGTTCCGGGTGGGGGACCTGCGCAGCTCGCACATTGTTGGAGCCAACATGAGGGCCAAACTCATAAAGTCTAAACAGACTCAGGAAGgtGAGTTTATCCCTCTGGACCAGACAGACATCAGTGTGGGTTTTGAGACGGGGGACGACCGCCTGTTTCTGGTGTCCCCACTGGTCATCTCCCACGAGATCGACTGCCGCTCGCCCTTCTGGGACATGTCTCAGGGCCAGCTGGAGAAGGACGACTTTGAGATGGTCGTCATCCTGGAGGGAATGGTGGAGGCCACTGGTATGACGTGCCAGGCGCGAAGCTCTTACCTGGCAGACGAGGTCCAGTGGGGTCACAGGTTTAGTCCGATGATGTCACTGGCCGAAGGCTTCTTTGACATTGACTATGGCGCCTTCCATCAAACCTTTgagGTGGACACTCCCTCCTGCTCAGCGCACGAACTCTCATTAGCTGCGGCCCGATTGGAGGCTCATCTCTATTGGTCGATCTCCAGTAAACTGGACGAAGAGAAATGGGAGGGATCTTCTCTGACCAACCAATCAGGGAAGCAGCTAGACAATGGGAAAGGAGGGGTCGTTGGCCCCGTTTCATTTATTGTTGGTGAGATCACTGGAATAGAAGAACAATCCGGACCAGGGGAGTTGAATGGAAGTGTCACCACTGACCAGTCAGAATCCGAGGCCTAAAGTAGATTggggcaccctatcccctatgcaGTGCACTTATTTTGAGCAGAGCCCTGGTCCACAGTACTATAAATGTCATGACAGGATGAACCACAATTGCAGTACTGTAAAATTTACTTTTAGCTAATGTATAACATACAGCCATAGAACATTTTTCCCCAAGGGAGAGTTGGGTGGTTTAAATGGTCCATTTTGCTCCTTCTTTGCTGTGTTGGATAACATTGACTTGGACATGACAAATTATATCAATTCAATTTTGTCTTTCATTTCTCTGGTGATATTTTATTATTACCATGAATGTCTGTGCTTCACTATAATTATATGATATTGTTATAGCTCCAATATCCTCTGTCAACAACATACATTATATGAATTAATAAaaatttttaaattttatttttaaGAATTAAGTATTGACAATTCTTTGTCAGGAAAGAGGATGTTGTTCAGCCAGGTGAGAACGTTCAGAGACATAGAAAGACAACAGTGTTTTGGAATGTTCTGGAACgttcagagacagaaagagaactgTGTTTTGGAATGTTCTGGAACGTtcagagacatagaaagagaacTGTGTTTTGGAATGTTCTGGAACGTTCAGAGACATAGAAAGAAAACTGTGTTTTGGAATGTTCTGGAACGTtcagagacatagaaagagaagCATGACATGTGTTGGCTGAATTGGGGAGTCAATGTATAAAAGGAATTATGTATTATGGATAGTGTGATAGAAGAGAACATGTATGGTTTTTCACTTTAGCATGTATAGAGCATATCAAGGAATCGATTGTAATCGTATCTCAATCTATCTCTAAAAAAAAACAAGGATTGTTTTAAAAGATTATATAGAAGTGTACATTATGATTACATTAAAACAACCACCATCTTGTGATTAATTTAGATGTAGAATCATTACTGTGTTAACCATTTTAAAGGGTTACATCATATGTACTGTAGCTTATCACTGACCATGTCCCAACTGGAGACTAGTGGAAGTATTAATCTAACAAAGCAAAGTATTTTCTCTCTTGGGAATGTTTCTGTGTGCTTTCACGTAGAAAGTAAGTAGCACAATGAAATATTTTCTTTCTATAGCCTCTTAGGATTTAAGCACAACTGTGTTCCTCTCTGCTCACCCCAACCTCATGCTTCTGCTGCTGTGTACATAGGAGCCTTTTTACTTGATGTTtttaatatatataaaaaatctgAATTATTATGTATCAAAATTAATAAACTATATTCCACACCAA
>XM_036986480.1
TGATCATGAATCTGGGTGATGGTTTATGAATGATGGTGATGACAGCATCCTCCTCGACTGTCGCTCCCATGTTCTAACACCTGCGCAGCTGCCGGTAATTCATACAATTTTATCTGAAGCGGATCGCTGCTGGCTTCACTGTCTATACCCAACGGACGAACTGCCACCATTTTAAACTCTTTGAAGACAAACTTGGAAAATATAAGAATATGCTATTTGTGAGCACGCTGTTTATTGAGGATTACAGACATCTAAAAAGCAGAGTCGTTTGGTTGGGGTTGCCTTTGTTTCCTGTTGAGAGAGTAGAGGACTGAACTGATGCTGCGTCGAACACCCTCCTCATCAGCAGAGCCGAtgataaacattaaaaaaattgTCGGATGATCGAACCTGAGCGGAAGATCTCCGAGGCTCGCTCTTGGACCATCCACTCATCTGACCTCAACGTAAAGAACCGGATTAATCCGCCAATAACCACTGGACAGAGTCTGCCGTAGGGGAGATATCAAAAACTCAGTAACACACACCATCATTCCTGATGGCGCTTGAAGACTCTTCCTTCCCCTCGCGGCCAgagtccctctctctgcctgtggtGGAGAAAGGGAAGGGACCAGTGGAAGAGGCTAGCGAGGTGACGGCCTCCACCGGAGTGTTTGATGTGTCTGAGGATCTGGGCCATGTGGTTACCACGGATACCGCCCAGCCTGGCGTTAACAGATCATGGAAGTCCAAGTTGGCAGAGAGGCAGGCCAATGCAGCATCCGAGGAGTACGTTAAGAAGCTGCCTCgggtggtggagaaggagaggggtagatTTGGCTGGGCCAAGAGACGTAAGACTCAGCGCTATGTGGAGAAGAATGGTCGCTGTAACGTTTCACACGGCAACATGAGGGAGACGTACCGTTATCTGACAGATATCTTCACCACGCTGGTGGACCTCAACTGGCGCTGCTCTCTCTTCGTCTTCGTCATGGCCTATGCCATCACCTGGCTCTTCTTCGGGGCCATTTGGTACCTGATAGCCTACCTCCGAGGGGATCTAGATCATCTGGAGGATGAGACATGGACACCGTGCGTCAACAACGTGAACGGCTTCATCTCtgccttcctcttctccatcgAGACAGAGACCACCATTGGTTACGGCCACCGTGTCATCACTGACCAGTGTCCAGTGGGCACCATGCTGCTCCTGCTCCAGGCCATACTAGGATCTATGGTCAACGCCTTCATGGTGGGCTGTATGTTTGTGAAGATCTCTCAGCCCAATAAGCGCGCGGAGACCCTGGTGTTTTCTAAGAATGCAGTGATCTCTCTGAGAGACGACAGACTGTGTCTGATGTTCCGGGTGGGGGACCTGCGCAGCTCGCACATTGTTGGAGCCAACATGAGGGCCAAACTCATAAAGTCTAAACAGACTCAGGAAGgtGAGTTTATCCCTCTGGACCAGACAGACATCAGTGTGGGTTTTGAGACGGGGGACGACCGCCTGTTTCTGGTGTCCCCACTGGTCATCTCCCACGAGATCGACTGCCGCTCGCCCTTCTGGGACATGTCTCAGGGCCAGCTGGAGAAGGACGACTTTGAGATGGTCGTCATCCTGGAGGGAATGGTGGAGGCCACTGGTATGACGTGCCAGGCGCGAAGCTCTTACCTGGCAGACGAGGTCCAGTGGGGTCACAGGTTTAGTCCGATGATGTCACTGGCCGAAGGCTTCTTTGACATTGACTATGGCGCCTTCCATCAAACCTTTgagGTGGACACTCCCTCCTGCTCAGCGCACGAACTCTCATTAGCTGCGGCCCGATTGGAGGCTCATCTCTATTGGTCGATCTCCAGTAAACTGGACGAAGAGAAATGGGAGGGATCTTCTCTGACCAACCAATCAGGGAAGCAGCTAGACAATGGGAAAGGAGGGGTCGTTGGCCCCGTTTCATTTATTGTTGGTGAGATCACTGGAATAGAAGAACAATCCGGACCAGGGGAGTTGAATGGAAGTGTCACCACTGACCAGTCAGAATCCGAGGCCTAAAGTAGATTggggcaccctatcccctatgcaGTGCACTTATTTTGAGCAGAGCCCTGGTCCACAGTACTATAAATGTCATGACAGGATGAACCACAATTGCAGTACTGTAAAATTTACTTTTAGCTAATGTATAACATACAGCCATAGAACATTTTTCCCCAAGGGAGAGTTGGGTGGTTTAAATGGTCCATTTTGCTCCTTCTTTGCTGTGTTGGATAACATTGACTTGGACATGACAAATTATATCAATTCAATTTTGTCTTTCATTTCTCTGGTGATATTTTATTATTACCATGAATGTCTGTGCTTCACTATAATTATATGATATTGTTATAGCTCCAATATCCTCTGTCAACAACATACATTATATGAATTAATAAaaatttttaaattttatttttaaGAATTAAGTATTGACAATTCTTTGTCAGGAAAGAGGATGTTGTTCAGCCAGGTGAGAACGTTCAGAGACATAGAAAGACAACAGTGTTTTGGAATGTTCTGGAACgttcagagacagaaagagaactgTGTTTTGGAATGTTCTGGAACGTtcagagacatagaaagagaacTGTGTTTTGGAATGTTCTGGAACGTTCAGAGACATAGAAAGAAAACTGTGTTTTGGAATGTTCTGGAACGTtcagagacatagaaagagaagCATGACATGTGTTGGCTGAATTGGGGAGTCAATGTATAAAAGGAATTATGTATTATGGATAGTGTGATAGAAGAGAACATGTATGGTTTTTCACTTTAGCATGTATAGAGCATATCAAGGAATCGATTGTAATCGTATCTCAATCTATCTCTAAAAAAAAACAAGGATTGTTTTAAAAGATTATATAGAAGTGTACATTATGATTACATTAAAACAACCACCATCTTGTGATTAATTTAGATGTAGAATCATTACTGTGTTAACCATTTTAAAGGGTTACATCATATGTACTGTAGCTTATCACTGACCATGTCCCAACTGGAGACTAGTGGAAGTATTAATCTAACAAAGCAAAGTATTTTCTCTCTTGGGAATGTTTCTGTGTGCTTTCACGTAGAAAGTAAGTAGCACAATGAAATATTTTCTTTCTATAGCCTCTTAGGATTTAAGCACAACTGTGTTCCTCTCTGCTCACCCCAACCTCATGCTTCTGCTGCTGTGTACATAGGAGCCTTTTTACTTGATGTTtttaatatatataaaaaatctgAATTATTATGTATCAAAATTAATAAACTATATTCCACACCAA

Function

NR:

description
G protein-activated inward rectifier potassium channel 3-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015467 G-protein activated inward rectifier potassium channel activity molecular_function

KEGG:

id description
K05002 KCNJ9, KIR3.3; potassium inwardly-rectifying channel subfamily J member 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986479.1 False 3387 mRNA 0.45 8 81621134 81632686
XM_036986480.1 True 3297 mRNA 0.45 8 81621138 81632686

Neighbor

gene id symbol gene type direction distance location
LOC110530755 LOC106569585 coding upstream 179406 81418372 ~ 81444081 (+)
LOC110529142 NA coding upstream 202812 81417140 ~ 81418322 (+)
LOC118965638 NA coding upstream 255365 81356959 ~ 81365769 (+)
LOC110530754 NA coding upstream 420713 81196167 ~ 81200421 (+)
LOC110530753 LOC106600601 coding upstream 431977 81076665 ~ 81189157 (+)
dnaaf6 LOC106569578 coding downstream 699 81633385 ~ 81636491 (+)
LOC110530761 LOC106569577 coding downstream 3983 81636669 ~ 81665274 (+)
lig1 lig1 coding downstream 33960 81666646 ~ 81692412 (+)
mpz myp0 coding downstream 78481 81711167 ~ 81743458 (+)
atp1a2a LOC100136182 coding downstream 114114 81746800 ~ 81779970 (+)
G753280 LOC106569576 non-coding upstream 1400 81618025 ~ 81619734 (+)
G753256 NA non-coding upstream 42698 81578231 ~ 81578436 (+)
G753252 NA non-coding upstream 56130 81564758 ~ 81565004 (+)
G753219 NA non-coding upstream 111601 81509291 ~ 81509533 (+)
G753217 NA non-coding upstream 116131 81504749 ~ 81505003 (+)
G753305 NA non-coding downstream 58260 81690946 ~ 81691368 (+)
G753319 NA non-coding downstream 80961 81713647 ~ 81715051 (+)
G753321 NA non-coding downstream 87745 81720431 ~ 81725384 (+)
G753322 NA non-coding downstream 93793 81726479 ~ 81730576 (+)
G753327 NA non-coding downstream 99089 81731775 ~ 81820622 (+)
G753205 LOC106569572 other upstream 133524 81486820 ~ 81487610 (+)
G752398 NA other upstream 879189 80741604 ~ 80741945 (+)
G752357 NA other upstream 987082 80631310 ~ 80634052 (+)
LOC110530726 LOC106600567 other upstream 2051257 79548127 ~ 79579010 (+)
ncana LOC106569686 other upstream 2273686 79210727 ~ 79347454 (+)
sdhc LOC106569582 other downstream 150663 81783282 ~ 81802285 (+)
G753337 NA other downstream 289476 81922162 ~ 81931491 (+)
G754927 NA other downstream 1623053 83255739 ~ 83257866 (+)
G755286 NA other downstream 1996686 83629372 ~ 83629738 (+)
G755277 NA other downstream 2020359 83653045 ~ 83654438 (+)

Expression


Co-expression Network