dnaaf6 (LOC106569578)


Basic Information

Item Value
gene id dnaaf6
gene name LOC106569578
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 81633385 ~ 81636491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614031.2
TCGTCACTCCCACAAGATGACGTAGTCGCGGTTTCCATGGCATCGAAAAAAGCTAAGCGACCATCTCCCTGGAAACAGTTGCCGGACACATTCCCACAGATAGGTTTAGTTAAAAAACATATTTGACGTTCTCCTTGTGGGACATGAATATATATCCTAtcgctttgatttgattttgtttagATAATCTTAATTCGCCTATTTTAGGTACACAGAGATTAGCCATTAGGTTTAACGCGAGATTGACGTATCCAGCAAATATTGTTTGTTGTaacttgctaacgttagctgactTTGGGAAGGAAGCCTTTGCTCGAACAAGTGAATATTCTTTCACAGTGTCAATGGAGGGGTTGTCATCAGCCCAGAATCTACAAGCGCTCTCTGCCCTCTTATCCACCCGGGACGAGGATGATGAATACAATTGTAGAAATATGACATCCTCAGCCGTAATGGGACCTGGAGATATTGGTCTCCCTTCACCTGCTGCCAACAAATCAGCCTACACCAAGAAGGACAGTAAAGCCATCTGGAGTGAGGAGGAGGTGACAGAGGGGTCGCAGTTTGATGACCTCACAGACACCCGGCCAAAGCCTGAgtatGACATATTGCTGAAGCAGAATGTTGGGACAGAGGACGTGTTTCTTGGGATGAGCCGAAAGGATCCCTCTTCCATGTGCTGTGACAGCATGCTGGTGAAAATCAAACTGCCAGACACCAAAGCAACAGATGTAGTCTTGGATGTGAAGGATAAATTCCTTGATCTGCGAACGCCAAACTTTAAACTTGGCCTACACCTTCCTCACCCAGTCCACAGTCAGGATGGAAAAGCCCAGTTCTACAGTGAAAGACAGGAGCTGGAGGTCACTCTACCAATGAACCGCCTCATGGACCAAATCAACCTGCAACGATGAGAGAAAGTTAGGAGAAAGGAAAAATAATTGAGGAACAAACTGAACTCGAGAGGAAATTAAGCAAATCTTGGAGGACACGTGCATGTggttatggcttcctgaagtccTGAAGTTCCTATCTATCTAGGGGTTCCTTCAGTTCCTACTTACCTGACCCGTGCACAGGTGAGAGCAGAGCCTATGTCTTCTGTCATGAAGCAGAAGAGATGGGTATTGTCAATTTCTCGCAATATAGATGATTTGTTTGTTTGAAGAGTTCCATGGTTTTAATTATAAAGTCTGACCATTTAATCTGTTCATTGAATATTATTTTTCTTCTGTTCCATTGAATATATTGGCCGCGTTTCAATAAATACATATGTCTGGTT
>XM_021614030.2
CATTGCTAACGATTAATCATTGAGATAAATTGTGTAAACAACCTAGCTAATAAAATTGGTTTTGGCAAACAAAATGTAATAACTTGTCCAGTTAGCATGCTAGCAAAAACCGATGATCATgcagctagttaacgttagatATGTGACAACAGCTACTTTGCACTTGCTTTCTATGTCAGTCTTTGAAAGTGATTTATTCGTCGAAATATTTTCTGAACAGAATATGACATCCTCAGCCGTAATGGGACCTGGAGATATTGGTCTCCCTTCACCTGCTGCCAACAAATCAGCCTACACCAAGAAGGACAGTAAAGCCATCTGGAGTGAGGAGGAGGTGACAGAGGGGTCGCAGTTTGATGACCTCACAGACACCCGGCCAAAGCCTGAgtatGACATATTGCTGAAGCAGAATGTTGGGACAGAGGACGTGTTTCTTGGGATGAGCCGAAAGGATCCCTCTTCCATGTGCTGTGACAGCATGCTGGTGAAAATCAAACTGCCAGACACCAAAGCAACAGATGTAGTCTTGGATGTGAAGGATAAATTCCTTGATCTGCGAACGCCAAACTTTAAACTTGGCCTACACCTTCCTCACCCAGTCCACAGTCAGGATGGAAAAGCCCAGTTCTACAGTGAAAGACAGGAGCTGGAGGTCACTCTACCAATGAACCGCCTCATGGACCAAATCAACCTGCAACGATGAGAGAAAGTTAGGAGAAAGGAAAAATAATTGAGGAACAAACTGAACTCGAGAGGAAATTAAGCAAATCTTGGAGGACACGTGCATGTggttatggcttcctgaagtccTGAAGTTCCTATCTATCTAGGGGTTCCTTCAGTTCCTACTTACCTGACCCGTGCACAGGTGAGAGCAGAGCCTATGTCTTCTGTCATGAAGCAGAAGAGATGGGTATTGTCAATTTCTCGCAATATAGATGATTTGTTTGTTTGAAGAGTTCCATGGTTTTAATTATAAAGTCTGACCATTTAATCTGTTCATTGAATATTATTTTTCTTCTGTTCCATTGAATATATTGGCCGCGTTTCAATAAATACATATGTCTGGTT

Function

NR:

description
protein PIH1D3 isoform X1

GO: NA

KEGG:

id description
K24253 DNAAF6, PIH1D3; dynein assembly factor 6, axonemal

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614031.2 False 1282 mRNA 0.44 6 81633385 81636491
XM_021614030.2 True 1071 mRNA 0.42 5 81633822 81636491

Neighbor

gene id symbol gene type direction distance location
LOC110530757 LOC106569574 coding upstream 699 81621134 ~ 81632686 (+)
LOC110530755 LOC106569585 coding upstream 191657 81418372 ~ 81444081 (+)
LOC110529142 NA coding upstream 215063 81417140 ~ 81418322 (+)
LOC118965638 NA coding upstream 267616 81356959 ~ 81365769 (+)
LOC110530754 NA coding upstream 432964 81196167 ~ 81200421 (+)
LOC110530761 LOC106569577 coding downstream 178 81636669 ~ 81665274 (+)
lig1 lig1 coding downstream 30155 81666646 ~ 81692412 (+)
mpz myp0 coding downstream 74676 81711167 ~ 81743458 (+)
atp1a2a LOC100136182 coding downstream 110309 81746800 ~ 81779970 (+)
sdhc LOC106569582 coding downstream 146791 81783282 ~ 81802285 (+)
G753280 LOC106569576 non-coding upstream 13651 81618025 ~ 81619734 (+)
G753256 NA non-coding upstream 54949 81578231 ~ 81578436 (+)
G753252 NA non-coding upstream 68381 81564758 ~ 81565004 (+)
G753219 NA non-coding upstream 123852 81509291 ~ 81509533 (+)
G753217 NA non-coding upstream 128382 81504749 ~ 81505003 (+)
G753305 NA non-coding downstream 54455 81690946 ~ 81691368 (+)
G753319 NA non-coding downstream 77156 81713647 ~ 81715051 (+)
G753321 NA non-coding downstream 83940 81720431 ~ 81725384 (+)
G753322 NA non-coding downstream 89988 81726479 ~ 81730576 (+)
G753327 NA non-coding downstream 95284 81731775 ~ 81820622 (+)
G753205 LOC106569572 other upstream 145775 81486820 ~ 81487610 (+)
G752398 NA other upstream 891440 80741604 ~ 80741945 (+)
G752357 NA other upstream 999333 80631310 ~ 80634052 (+)
LOC110530726 LOC106600567 other upstream 2063508 79548127 ~ 79579010 (+)
ncana LOC106569686 other upstream 2285937 79210727 ~ 79347454 (+)
G753337 NA other downstream 285671 81922162 ~ 81931491 (+)
G754927 NA other downstream 1619248 83255739 ~ 83257866 (+)
G755286 NA other downstream 1992881 83629372 ~ 83629738 (+)
G755277 NA other downstream 2016554 83653045 ~ 83654438 (+)

Expression


Co-expression Network