LOC110530761 (LOC106569577)


Basic Information

Item Value
gene id LOC110530761
gene name LOC106569577
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 81636669 ~ 81665274 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986483.1
GCATACGTTTCAGACAAAATCCTGGACAAAACAATATAACCGCTCCATATCATTGCGCTGCACGGTTCTGTTCCTCCCACGCCTTTGCTCGGTATGGCGGACGGTGAGAGGTCCCCGTTACTAGCAGATCTTGGAGATGGTGCTCTTGTCGGCGGTAACGGCGGAGTGTCACCGGGCTCGGCTCCCTATGGtttaccaaataaaccacaaAGCTTCCCTCCCTTCCCCAGCACCACCCAGCCCTCAGTGCTCCTGGGGGAGGACCCTCCTCCGTactcccccctcacctccccaGAGAGTGGCAGCGCGCCAGTCATCAGCTGTAGGGTGTGTCAGAGCCTCATCAGTGTGGAAGGGAAGCTCCACCAGCATGTGGTCAAGTGTGGGGTCTGCAACGAAGCTACGcCCATCAAGAATGCACCAGCAGGGAAGAAGTATGTACGCTGTCCCTGTAACTGTCTACTCATCTGCAAAGTCACCTCTCAGAGGATCGCCTGTCCCCGCCCCTACTGTAAGAGGATAATTAACCTGGGTCCAGTCCACCCTGGTCCAGCCAGCCCTGAACCCCAGCCGGCCGGAGCTCGCGTCTCCTGTGGACACTGCAACAACACTTTCCTGAAGGATGCGAGGAAAAGGAATCTAGGAAAGATGATTTTGAGAAAGAGCCACAGTGTACACCAAAGCAGTTATGAAGGCAAGGAATTCTTGAATGTTGCTAACATGGATAGTACTCTGCTGGACAATTGAATTGACGTACTgtataatattttatatttacatGAGTTT
>XM_036986481.1
CATACGTTTCAGACAAAATCCTGGACAAAACAATATAACCGCTCCATATCATTGCGCTGCACGGTTCTGTTCCTCCCACGCCTTTGCTCGGTATGGCGGACGGTGAGAGGTCCCCGTTACTAGCAGATCTTGGAGATGGTGCTCTTGTCGGCGGTAACGGCGGAGTGTCACCGGGCTCGGCTCCCTATGGtttaccaaataaaccacaaAGCTTCCCTCCCTTCCCCAGCACCACCCAGCCCTCAGTGCTCCTGGGGGAGGACCCTCCTCCGTactcccccctcacctccccaGAGAGTGGCAGCGCGCCAGTCATCAGCTGTAGGGTGTGTCAGAGCCTCATCAGTGTGGAAGGGAAGCTCCACCAGCATGTGGTCAAGTGTGGGGTCTGCAACGAAGCTACGcCCATCAAGAATGCACCAGCAGGGAAGAAGTATGTACGCTGTCCCTGTAACTGTCTACTCATCTGCAAAGTCACCTCTCAGAGGATCGCCTGTCCCCGCCCCTACTGTAAGAGGATAATTAACCTGGGTCCAGTCCACCCTGGTCCAGCCAGCCCTGAACCCCAGCCGGCCGGAGCTCGCGTCTCCTGTGGACACTGCAACAACACTTTCCTGTGGACAGAGTTTACTGACAGGACACTCGCCAGGTGCCCACACTGCAGGAAAGTCTCCTCTATTGGTCAGAGGTACCCTCGAAGGCGGAGCTTGTGGTGTATTCTACTATGCTTGCTTTTCAGCATCTCCACTGCTGGGCTGGTGGCAGGTACGTGGGTGAAGGCCCAGGCCTACGGGGGTATCTATGCCTCCTGGGCCATGCTGATCCTGCTGGTACTCCTGACCCTGGGTCGGGCTCTATACTGGGCCTGCATGCCTCCTTCCAGTCGGTCAGCCTCTCACCTTCTGCCGTACTGCCTCCCGAAGCCCATCCCGTTGCCCTCTTTGGGGCCacttccccttcctctctgttCCCCCTCCTCCTGGGAACTCAAACCCTAATCTGAGGGAGCTCTT
>XM_036986482.1
TACGTTTCAGACAAAATCCTGGACAAAACAATATAACCGCTCCATATCATTGCGCTGCACGGTTCTGTTCCTCCCACGCCTTTGCTCGGTATGGCGGACGGTGAGAGGTCCCCGTTACTAGCAGATCTTGGAGATGGTGCTCTTGTCGGCGGTAACGGCGGAGTGTCACCGGGCTCGGCTCCCTATGGtttaccaaataaaccacaaAGCTTCCCTCCCTTCCCCAGCACCACCCAGCCCTCAGTGCTCCTGGGGGAGGACCCTCCTCCGTactcccccctcacctccccaGAGAGTGGCAGCGCGCCAGTCATCAGCTGTAGGGTGTGTCAGAGCCTCATCAGTGTGGAAGGGAAGCTCCACCAGCATGTGGTCAAGTGTGGGGTCTGCAACGAAGCTACGcCCATCAAGAATGCACCAGCAGGGAAGAAGTATGTACGCTGTCCCTGTAACTGTCTACTCATCTGCAAAGTCACCTCTCAGAGGATCGCCTGTCCCCGCCCCTACTGTAAGAGGATAATTAACCTGGGTCCAGTCCACCCTGGTCCAGCCAGCCCTGAACCCCAGCCGGCCGGAGCTCGCGTCTCCTGTGGACACTGCAACAACACTTTCCTGTGGACAGAGTTTACTGACAGGACACTCGCCAGGTGCCCACACTGCAGGAAAGTCTCCTCTATTGGTCAGAGGTACCCTCGAAGGCGGAGCTTGTGGTGTATTCTACTATGCTTGCTTTTCAGCATCTCCACTGCTGGGCTGGTGGCAGGCCAGTCTCTCTATGGCAGGCGCTGGCAGCCACACCAGAGCCTCATATCATGGCATGGCTGAGTGGAACCAAGTCTTAAATGATGACATAGCCCTCGGATAAGACTGCTCCTCCGCGACCCTGAATATATGTTCTGTTTTTGGGGCATTTCACATGAGCTTCATTCATTTGTTTTGGAAAACCCTTGAAGCACTGTTGAAAGGCAAATTAAGCTAAATTGAGGCTAGTGTAAGGTGAACACCACCTAAATTACCCTCCTTCCCCCAGACATGGAGCTGGGTTTGAAGGGAGGTTAGGATTgtgtcccaaagggcaccctattccctaaatagtgcactacttatgaccagggctCAGTCTGGTCGAaggtcagaagtagtgtactatattgggaatagggtgcctattGGGTTGCTTGCTAGGGCATCGTCAGAGTGAGGTCTGTCTGTATGTTGGAGTCTATTTATGCTGCATAGTCTGTCTGTGGGAGTGTTCGTCTTTGATCCAAAGCAGCTTAGAAGCCTTAAAGAAGTTAGAGGAAAATATTAAACAAtttgactgcacacacacacacacacacacacgtatgtacgTGCACACTTTCATTCCCCACACATACCAACATTTGGAGAGTCCCTGTAGTGGTATGCAGCCAGCGTGAAAAAGCATCTCTCCTCAAGGACTTCAGTTTAGACACAAGTTTGTTGCAAGTGATCTGATCATCTCTTTATTGTGCTCTTGGTTAATATTGTTTTCTTATCCCTCTAATAGCTAACAAGTGAGGTCAACATGAGCTCTCAGTGGAACTCATAGAGATGTACTAGAGAGCTTCAAGGTGGTGAAAGCCCACCATGGCTCTGCCCGCGTTAGAGAAAGAACTGGCTTTTGGCCAAATGTGCTCTCTTTCCAACTCTATGGTCTTACTACACTAAATGTACTATGATGAGGCCCTGGTGACAGAGGCAGGCTGTGGTTGTTGTAGACCCCTTACTCTTCTAgtggtgcactaaatagggagtagggtgccgttGGGGATTCAGTCAGGGTAAGAGAAAACGGTTGCTGAAGATAATCTAGACACACTACCTGCATGTTGAAACACACTTCATCTAACCATATATCCTGTCTGTGGTTCGGATGAGGTcatagttatttatttattttacagcaatgttcattttttgtttgttttaattgTACATATTTCTTGTTGTTCATGTCAGAGTAATTATTGCTAAGTCGATATTGCACTTATGTGCATAACACTACATGATTTGATTCTTGGATAACTTTTTTAATAATTGTTTTGTTAATCAATATCAATAAGGTTATTTTTGCAACCCTTGTTACTTATTTTATCGGGAATCTGCAAAGTTGTTAGATATTTGACTTACTAACACATTAAGTCTCTGGATACGGGAACGTGTCCAGACCTTAACCACACACATTCCTCATTTACATACAGACAATCAATCATTTAAACCACAAATGGCAtcattttaaacacacacacacacacacagagagacaaacggATGGACACACGTACAGCTCTTTCAGATGGTTACCCTGCTTGACAGAACTGTGACGGTAGCAGTAATAGATATTTTAAAATATCTTGTTATTTATTATAATGATCATGTTTTAATCATGATATTATGTACAATATTGATCATGTTAATGATGCCAATAATCAACAACCTGGCTGATGCTCATATCAGAGTTTGTTTACACACAATAAAGACATGATGTATGAAAATATCA
>XM_021614020.2
ACGTTTCAGACAAAATCCTGGACAAAACAATATAACCGCTCCATATCATTGCGCTGCACGGTTCTGTTCCTCCCACGCCTTTGCTCGGTATGGCGGACGGTGAGAGGTCCCCGTTACTAGCAGATCTTGGAGATGGTGCTCTTGTCGGCGGTAACGGCGGAGTGTCACCGGGCTCGGCTCCCTATGGtttaccaaataaaccacaaAGCTTCCCTCCCTTCCCCAGCACCACCCAGCCCTCAGTGCTCCTGGGGGAGGACCCTCCTCCGTactcccccctcacctccccaGAGAGTGGCAGCGCGCCAGTCATCAGCTGTAGGGTGTGTCAGAGCCTCATCAGTGTGGAAGGGAAGCTCCACCAGCATGTGGTCAAGTGTGGGGTCTGCAACGAAGCTACGcCCATCAAGAATGCACCAGCAGGGAAGAAGTATGTACGCTGTCCCTGTAACTGTCTACTCATCTGCAAAGTCACCTCTCAGAGGATCGCCTGTCCCCGCCCCTACTGTAAGAGGATAATTAACCTGGGTCCAGTCCACCCTGGTCCAGCCAGCCCTGAACCCCAGCCGGCCGGAGCTCGCGTCTCCTGTGGACACTGCAACAACACTTTCCTGTGGACAGAGTTTACTGACAGGACACTCGCCAGGTGCCCACACTGCAGGAAAGTCTCCTCTATTGGTCAGAGGTACCCTCGAAGGCGGAGCTTGTGGTGTATTCTACTATGCTTGCTTTTCAGCATCTCCACTGCTGGGCTGGTGGCAGGTACGTGGGTGAAGGCCCAGGCCTACGGGGGTATCTATGCCTCCTGGGCCATGCTGATCCTGCTGGTACTCCTGACCCTGGGTCGGGCTCTATACTGGGCCTGCATGCCTGTTAGTGAGCCCCTACAGAActtcacatagacacacacacacacacgcaagcgtagggtgaagttgcccctagatgctgatcttgggccAGTTTTGCaatttccccactaatggttaaggtcagGATTGTGGGAAGGgacactgatcctagatctgtacctagggtgAACTTCACCCTtgagtagggctgggcgatatataTCGAATTAATTTGATGTTTTTGCGCGttattccaaatgcctgtatcggAAGAAGCTAGTTAGTTCATTTATTGTTTTTCTGAGCGTTTGTCCGCTTGttctcatgttgtcttgtctccttCGCTCCGTCTGtgctgtgcaccttcccatttataccagagatctgtatataatgatgagCTGCGTATGTCTCCGCtataacaatgggagtcgttgtcccagaGGCGGGAAGGCAGCCGATAAGcttaggttaaaaaaaaaa
>XM_021614019.2
ACGTTTCAGACAAAATCCTGGACAAAACAATATAACCGCTCCATATCATTGCGCTGCACGGTTCTGTTCCTCCCACGCCTTTGCTCGGTATGGCGGACGGTGAGAGGTCCCCGTTACTAGCAGATCTTGGAGATGGTGCTCTTGTCGGCGGTAACGGCGGAGTGTCACCGGGCTCGGCTCCCTATGGtttaccaaataaaccacaaAGCTTCCCTCCCTTCCCCAGCACCACCCAGCCCTCAGTGCTCCTGGGGGAGGACCCTCCTCCGTactcccccctcacctccccaGAGAGTGGCAGCGCGCCAGTCATCAGCTGTAGGGTGTGTCAGAGCCTCATCAGTGTGGAAGGGAAGCTCCACCAGCATGTGGTCAAGTGTGGGGTCTGCAACGAAGCTACGcCCATCAAGAATGCACCAGCAGGGAAGAAGTATGTACGCTGTCCCTGTAACTGTCTACTCATCTGCAAAGTCACCTCTCAGAGGATCGCCTGTCCCCGCCCCTACTGTAAGAGGATAATTAACCTGGGTCCAGTCCACCCTGGTCCAGCCAGCCCTGAACCCCAGCCGGCCGGAGCTCGCGTCTCCTGTGGACACTGCAACAACACTTTCCTGTGGACAGAGTTTACTGACAGGACACTCGCCAGGTGCCCACACTGCAGGAAAGTCTCCTCTATTGGTCAGAGGTACCCTCGAAGGCGGAGCTTGTGGTGTATTCTACTATGCTTGCTTTTCAGCATCTCCACTGCTGGGCTGGTGGCAGGTACGTGGGTGAAGGCCCAGGCCTACGGGGGTATCTATGCCTCCTGGGCCATGCTGATCCTGCTGGTACTCCTGACCCTGGGTCGGGCTCTATACTGGGCCTGCATGCCTGCCAGTCTCTCTATGGCAGGCGCTGGCAGCCACACCAGAGCCTCATATCATGGCATGGCTGAGTGGAACCAAGTCTTAAATGATGACATAGCCCTCGGATAAGACTGCTCCTCCGCGACCCTGAATATATGTTCTGTTTTTGGGGCATTTCACATGAGCTTCATTCATTTGTTTTGGAAAACCCTTGAAGCACTGTTGAAAGGCAAATTAAGCTAAATTGAGGCTAGTGTAAGGTGAACACCACCTAAATTACCCTCCTTCCCCCAGACATGGAGCTGGGTTTGAAGGGAGGTTAGGATTgtgtcccaaagggcaccctattccctaaatagtgcactacttatgaccagggctCAGTCTGGTCGAaggtcagaagtagtgtactatattgggaatagggtgcctattGGGTTGCTTGCTAGGGCATCGTCAGAGTGAGGTCTGTCTGTATGTTGGAGTCTATTTATGCTGCATAGTCTGTCTGTGGGAGTGTTCGTCTTTGATCCAAAGCAGCTTAGAAGCCTTAAAGAAGTTAGAGGAAAATATTAAACAAtttgactgcacacacacacacacacacacacgtatgtacgTGCACACTTTCATTCCCCACACATACCAACATTTGGAGAGTCCCTGTAGTGGTATGCAGCCAGCGTGAAAAAGCATCTCTCCTCAAGGACTTCAGTTTAGACACAAGTTTGTTGCAAGTGATCTGATCATCTCTTTATTGTGCTCTTGGTTAATATTGTTTTCTTATCCCTCTAATAGCTAACAAGTGAGGTCAACATGAGCTCTCAGTGGAACTCATAGAGATGTACTAGAGAGCTTCAAGGTGGTGAAAGCCCACCATGGCTCTGCCCGCGTTAGAGAAAGAACTGGCTTTTGGCCAAATGTGCTCTCTTTCCAACTCTATGGTCTTACTACACTAAATGTACTATGATGAGGCCCTGGTGACAGAGGCAGGCTGTGGTTGTTGTAGACCCCTTACTCTTCTAgtggtgcactaaatagggagtagggtgccgttGGGGATTCAGTCAGGGTAAGAGAAAACGGTTGCTGAAGATAATCTAGACACACTACCTGCATGTTGAAACACACTTCATCTAACCATATATCCTGTCTGTGGTTCGGATGAGGTcatagttatttatttattttacagcaatgttcattttttgtttgttttaattgTACATATTTCTTGTTGTTCATGTCAGAGTAATTATTGCTAAGTCGATATTGCACTTATGTGCATAACACTACATGATTTGATTCTTGGATAACTTTTTTAATAATTGTTTTGTTAATCAATATCAATAAGGTTATTTTTGCAACCCTTGTTACTTATTTTATCGGGAATCTGCAAAGTTGTTAGATATTTGACTTACTAACACATTAAGTCTCTGGATACGGGAACGTGTCCAGACCTTAACCACACACATTCCTCATTTACATACAGACAATCAATCATTTAAACCACAAATGGCAtcattttaaacacacacacacacacacagagagacaaacggATGGACACACGTACAGCTCTTTCAGATGGTTACCCTGCTTGACAGAACTGTGACGGTAGCAGTAATAGATATTTTAAAATATCTTGTTATTTATTATAATGATCATGTTTTAATCATGATATTATGTACAATATTGATCATGTTAATGATGCCAATAATCAACAACCTGGCTGATGCTCATATCAGAGTTTGTTTACACACAATAAAGACATGATGTATGAAAATATCA

Function

NR:

description
type I phosphatidylinositol 4,5-bisphosphate 4-phosphatase-A-like isoform X1

GO:

id name namespace
GO:0005765 lysosomal membrane cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K13084 TMEM55; phosphatidylinositol-4,5-bisphosphate 4-phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986483.1 False 786 mRNA 0.53 5 81636669 81645142
XM_036986481.1 False 1013 mRNA 0.58 8 81636670 81665274
XM_036986482.1 False 2527 mRNA 0.45 8 81636672 81649891
XM_021614020.2 False 1334 mRNA 0.53 7 81636673 81646800
XM_021614019.2 True 2636 mRNA 0.46 8 81636673 81649891

Neighbor

gene id symbol gene type direction distance location
dnaaf6 LOC106569578 coding upstream 178 81633385 ~ 81636491 (+)
LOC110530757 LOC106569574 coding upstream 3983 81621134 ~ 81632686 (+)
LOC110530755 LOC106569585 coding upstream 194941 81418372 ~ 81444081 (+)
LOC110529142 NA coding upstream 218347 81417140 ~ 81418322 (+)
LOC118965638 NA coding upstream 270900 81356959 ~ 81365769 (+)
lig1 lig1 coding downstream 1372 81666646 ~ 81692412 (+)
mpz myp0 coding downstream 45893 81711167 ~ 81743458 (+)
atp1a2a LOC100136182 coding downstream 81526 81746800 ~ 81779970 (+)
sdhc LOC106569582 coding downstream 118008 81783282 ~ 81802285 (+)
trnar-ucu-2 NA coding downstream 140274 81805548 ~ 81805621 (+)
G753280 LOC106569576 non-coding upstream 16935 81618025 ~ 81619734 (+)
G753256 NA non-coding upstream 58233 81578231 ~ 81578436 (+)
G753252 NA non-coding upstream 71665 81564758 ~ 81565004 (+)
G753219 NA non-coding upstream 127136 81509291 ~ 81509533 (+)
G753217 NA non-coding upstream 131666 81504749 ~ 81505003 (+)
G753305 NA non-coding downstream 25672 81690946 ~ 81691368 (+)
G753319 NA non-coding downstream 48373 81713647 ~ 81715051 (+)
G753321 NA non-coding downstream 55157 81720431 ~ 81725384 (+)
G753322 NA non-coding downstream 61205 81726479 ~ 81730576 (+)
G753327 NA non-coding downstream 66501 81731775 ~ 81820622 (+)
G753205 LOC106569572 other upstream 149059 81486820 ~ 81487610 (+)
G752398 NA other upstream 894724 80741604 ~ 80741945 (+)
G752357 NA other upstream 1002617 80631310 ~ 80634052 (+)
LOC110530726 LOC106600567 other upstream 2066792 79548127 ~ 79579010 (+)
ncana LOC106569686 other upstream 2289221 79210727 ~ 79347454 (+)
G753337 NA other downstream 256888 81922162 ~ 81931491 (+)
G754927 NA other downstream 1590465 83255739 ~ 83257866 (+)
G755286 NA other downstream 1964098 83629372 ~ 83629738 (+)
G755277 NA other downstream 1987771 83653045 ~ 83654438 (+)

Expression


Co-expression Network