sdhc (LOC106569582)


Basic Information

Item Value
gene id sdhc
gene name LOC106569582
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 81783282 ~ 81802285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986487.1
GGCCGTCCCAAGCATCCCGTCTAGCACTAATCGGACCGTCAGGAAAAATATAATAACATCCGATTACGCCATATCCTGTTTCAGCTGTTAAAGAAACAATGGCGTTGCTTCTAAGTGCTGTTCCAATGGGAACCACAGCAAAGGAGGAAATGAACAAGTTCTGGGACAAAAACAACAAATTGAACCGACCCATGTCGCCACATATCACCATCTACCAGTGGTCGGTGCCTATGATGATGTCCATCACACACAGAGGCACGGGAGTTGGACTCAGTGGAGGTATATCGGCGTTTGCTCTCTTAGCGTTGGTGTTGCCAGATAGCTACCCTTACTACCTTGACCTGATCCACTCCCTGTCCATTGGCCCTGCTCTACTCGGCCTAGCTAAGTTTGGCATTGCCTTCCCTCTGTCCTACCACACCTTGAATGGAATCCGCCATCTGTTCTGGGACAGTGGTAAGGGATTTACGCTTCCTGAGGTGTATCGCTCGGGCTACGTGGTCATCGCGCTGTCAATACTGACCTCCATTGCTGCCATTGCATACATGTGAGCAGCGCGGTGGAGAAACG
>XM_036986486.1
CCGTCTAGCACTAATCGGACCGTCAGGAAAAATATAATAACATCCGATTACGCCATATCCTGTTTCAGCTGTTAAAGAAACAATGGCGTTGCTTCTAAGGACACTAGCCCGACAGGGCACTTGCTTGTCCCGCCCTCAGTTTGGCGTTTTCTACAGACATGCTGTTCCAATGGGAACCACAGCAAAGGAGGAAATGAACAAGTTCTGGGACAAAAACAACAAATTGAACCGACCCATGTCGCCACATATCACCATCTACCAGTGGTCGGTGCCTATGATGATGTCCATCACACACAGAGGCACGGGAGTTGGACTCAGTGGAGGTATATCGGCGTTTGCTCTCTTAGCGTTGGTGTTGCCAGATAGCTACCCTTACTACCTTGACCTGATCCACTCCCTGTCCATTGGCCCTGCTCTACTCGGCCTAGCTAAGTTTGGCATTGCCTTCCCTCTGTCCTACCACACCTTGAATGGAATCCGCCATCTGTTCTGGGACAGTGGTAAGGGATTTACGCTTCCTGAGGTGTATCGCTCGGGCTACGTGGTCATCGCGCTGTCAATACTGACCTCCATTGCTGCCATTGCATACATGTGAGCAGCGCGGTGGAGAAACGGAGGCGGAGAGAGTATGGAGTGAGGTGATGAAGgggttgttttgtttgttatatATTCTGCTCTTTGTGTCACCAACACAGTAATTGAATGGATAAATGTATAAATACATCAAATGTTTTGTGGTTTTTATCATGGAAAGGTTTATCCTGGTCAATCGGTTAACATGGTCCccggggtagacgtaacataataCATGTAAATCACTCAATTACTACGTTATGCTATGTTTCTTATGGTatatattaatttgtggatgtttCGCATTGGGTATGTTATAAATTGGAATTTGtataatatgttacaaatttgcaaaacatatATGTTAAGAATTCTAATTCGAATTCGAATTCTAATGTTGGGTAGATTTAGGGGTGAAAGGAATATCTTTAAAAATTCATAAGTAGTTGCTAAAATTGTCCGTGATTAGTTTCAAACACTCATTCATtatttgggttgctagatgttcacGTTATTCACCCATCCAACCACTCTACTTTCATtgttgccttaagtaaccttctgtaaCCATATCAAATATCACCTTTTATGTAACCATATCAAACGtatcatatcatactaatttgagggTGCCGGATTTAGAtgtactatgttatgtctagtctatgagaccaggctggctgTGCTCAAGTTTAATGTCAAGTGAAATGCATGTAATATATTAGTGAAATCAATTAAACAGAATGGGTGCTACAAAA
>TU855521
GCCATATCCTGTTTCAGCTGTTAAAGAAACAATGGCGTTGCTTCTAAGTGCTGTTCCAATGGGAACCACAGCAAAGGAGGAAATGAACAAGTTCTGGGACAAAAACAACAAATTGAACCGACCCATGTCGCCACATATCACCATCTACCAGTGGTCGGTGCCTATGATGATGTCCATCACACACAGAGGCACGGGAGTTGGACTCAGTGGAGGTATATCGGCGTTTGCTCTCTTAGCGTTGGTGTTGCCAGATAGCTACCCTTACTACCTTGACCTGATCCACTCCCTGTCCATTGGCCCTGCTCTACTCGGCCTAGCTAAGTTTGGCATTGCCTTCCCTCTGTCCTACCACACCTTGAATGGAATCCGCCATCTGTGGTAAGGGATTTACGCTTCCTGAGGTGTATCGCTCGGGCTACGTGGTCATCGCGCTGTCAATACTGACCTCCATTGCTGCCATTGCATACATGTGAGCAGCGCGGTGGAGAAACGGAGGCGGAGAGAGTATGGAGTGAGGTGATGAAGgggttgttttgtttgttatatATTCTGCTCTTTGTGTCACCAACACAGTAATTGAATGGATAAATGTATAAATACATCAAATGTTTTGTGGTTTTTATCATGGAAAGGTTTATCCTGGTCAATCGGTTAACATGGTCCccggggtagacgtaacataataCATGTAAATCACTCAATTACTACGTTATGCTATGTTTCTTATGGTatatattaatttgtggatgtttCGCATTGGGTATGTTATAAATTGGAATTTGtataatatgttacaaatttgcaaaacatatATGTTAAGAATTCTAATTCGAATTCGAATTCTAATGTTGGGTAGATTTAGGGGTGAAAGGAATATCTTTAAAAATTCATAAGTAGTTGCTAAAATTGTCCGTGATTAGTTTCAAACACTCATTCATtatttgggttgctagatgttcacGTTATTCACCCATCCAACCACTCTACTTTCATtgttgccttaagtaaccttctgtaaCCATATCAAATATCACCTTTTATGTAACCATATCAAACGtatcatatcatactaatttgagggTGCCGGATTTAGAtgtactatgttatgtctagtctatgagaccaggctggctgTGCTCAAGTTTAATGTCAAGTGAAATGCATGTAATATATTAGTGAAATCAATTAAACAGAATGGGTGCTACAAAA

Function

NR:

description
PREDICTED: succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986487.1 False 570 mRNA 0.51 5 81783282 81801568
XM_036986486.1 False 1331 mRNA 0.41 6 81783298 81802285
TU855521 True 1209 TUCP 0.41 5 81783349 81802285

Neighbor

gene id symbol gene type direction distance location
atp1a2a LOC100136182 coding upstream 3312 81746800 ~ 81779970 (+)
mpz myp0 coding upstream 39824 81711167 ~ 81743458 (+)
lig1 lig1 coding upstream 90870 81666646 ~ 81692412 (+)
LOC110530761 LOC106569577 coding upstream 118008 81636669 ~ 81665274 (+)
dnaaf6 LOC106569578 coding upstream 146791 81633385 ~ 81636491 (+)
trnar-ucu-2 NA coding downstream 3263 81805548 ~ 81805621 (+)
LOC110511052 LOC106569583 coding downstream 6168 81808453 ~ 81922125 (+)
kirrel1b LOC106569584 coding downstream 143907 81946192 ~ 82034520 (+)
LOC110530760 NA coding downstream 302815 82105100 ~ 82108513 (+)
LOC110530764 NA coding downstream 435431 82237716 ~ 82252379 (+)
G753322 NA non-coding upstream 52706 81726479 ~ 81730576 (+)
G753321 NA non-coding upstream 57898 81720431 ~ 81725384 (+)
G753319 NA non-coding upstream 68231 81713647 ~ 81715051 (+)
G753305 NA non-coding upstream 91914 81690946 ~ 81691368 (+)
G753280 LOC106569576 non-coding upstream 163548 81618025 ~ 81619734 (+)
G753374 NA non-coding downstream 31003 81833288 ~ 81834194 (+)
G753372 NA non-coding downstream 81487 81883772 ~ 81884563 (+)
G753338 NA non-coding downstream 116127 81918412 ~ 81929038 (+)
G753337 NA non-coding downstream 119877 81922162 ~ 81931491 (+)
G753440 NA non-coding downstream 153583 81955868 ~ 81963152 (+)
G753205 LOC106569572 other upstream 295672 81486820 ~ 81487610 (+)
G752398 NA other upstream 1041337 80741604 ~ 80741945 (+)
G752357 NA other upstream 1149230 80631310 ~ 80634052 (+)
LOC110530726 LOC106600567 other upstream 2213405 79548127 ~ 79579010 (+)
ncana LOC106569686 other upstream 2435834 79210727 ~ 79347454 (+)
G754927 NA other downstream 1453454 83255739 ~ 83257866 (+)
G755286 NA other downstream 1827087 83629372 ~ 83629738 (+)
G755277 NA other downstream 1850760 83653045 ~ 83654438 (+)
G755298 NA other downstream 1855812 83658097 ~ 83660046 (+)

Expression


Co-expression Network