scp2a (scp2)


Basic Information

Item Value
gene id scp2a
gene name scp2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 82362119 ~ 82384858 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986513.1
AGTTCATCCATTGTTTACGCAACTGGACACACTTTCAACTGACTTCATTAAGAAGTCACTGTATTGTGTAACGTTAATACGGATATAGAAAGCTAGCATCATTACAGGCAAGGAGTTATGCTGCGTTCACATGCTCCACGGAAACTCCTTCGTAGTACTTTGACGTCTCAGTTCGGTGAACGGTTATCATCCTTATTGTCACTCTTCCCTCTTGGAAGCACTCGTCTCAGCACAACAACCAGAATGGCTCCTCAAAAGAACAGAGTATTCGTCATTGGAGTGGGAATGACAAAGTTTGAGAAGCCAGGAAAAGAAGACTTTGACTATCCCGACATGGCAAAGATAGCAGGCGAGAGGGCCTTGTCTGATGCTGGAGTCCCCTACTCTGCTATAGAGCAAGCCTGTGTGGGCTATGTGTATGGTGACTCTACCTGTGGCCAGAGGGCCATCTACCACAGCCTTGGCCTGTCAGGGATCCCCATCATCAAcgtcaacaacaactgctccacaGGCTCCACTGCCCTGTTCATGGCCCGACAGCTAATCCAGGGAGGTCTGGTTGACTGTGCACTAGCCCTTGGCTTTgaaaagatggagagaggctCCTTGTCATCAAAGTTCATGGACAGGACTAACCCCATGGACAAGCATATGGAGGTGATGTTCAACACATATGGGATGGCAGCAGCACCGGCAGCACCACAGATGTTTGGCAACGCGGGCAGAGAACACATGGAGAAATACGGTACTACACCAGAGCACTTTGCTAAAATCGCATGGAAGAACCACAAGCATTCCACCAACAACCCgtACTCTCAGTTCCAGGATGAGTACAGTCTGGACCAGGTCAAACAGTCCAGGAAGGTGTTTGAGTTCCTTACTCTTCTCCAGTGTTGtcctacCTCTGACGGTGCAGGGGCAGCTGTCCTGGCCAGTGAGGGCTTTGTGAGGCGCCATGGTCTAGAGCACCAGGCGGTGGAGATCTTAGCCCAGGAGATGGTCACGGACCTCGCAACTACCTTCGAAGACAATAGCTGCATGAAGATGGTTGGATACGACATGACCTCCCTGGCAGCCAAGAAGTGTTTTGAGACAGCGGGTCTGAAACCCAGTGACGTCAATGTGATCGAGCTACACGACTGTTTCTCTGCCAACGAGCTGATCACGTACGAGGCTCTGGGGTTGTGCCCAGAGGGTAAGGCTGGAGAGCTGATAGACAGAGGAGACAACACGTACGGAGGCCAGTGGGTGGTCAACCCCAGCGGAGGACTCATCTCTAAAGGACACCCTCTGGGAGCCACAGGTCTGGCCCAGTGTGCGGAGCTGTGCTGGCAGCTGAGAGGCCAGGCTGAGAGGAGGCAGGTCCCGGGGGCGAAGGTGGCCCTACAGCACAATATCGGCCTGGGAGGAGCTGTGGTCGTCACTCTCTACAGGATGGGGTTCCCTCAGGATGCCAGgTCCCAGATAGCGGCTGTCCCCACCAGAGCAGAACGTCTGGAGGGCTTCAGAGTCTATTCTGTCTTCCAGGAGATAGAGAACAAACTACAGGAGATAAGAAGGCTGACTGCACTATCACCATGGGAGATGAAGACTTAATGAAGCTGATGACAGGCAAGATGAATCCACAGACGGCATTCTTCCAGGGCAAGCTGAAGATCGCAGGAAACATGGGCATGGCCATGAAGCTTCAGAGTCTGCAGCTGGTGCCAGCCAAAGCCAAGCTGTGATTGGCTGATAGACCCTCAGCTCTGGAACTCCTGCCATATGTAGCAGTTATGCACATTCTCTCACCCCTTTCTCACCCctttctcacccctcctctcagctctctctaacctctctcacccctcctctcacccctttctcacccctcctctcagctctctctaacctcctTCACCcctcctttcatctctctctcacctctctctaacctc
>XM_036986511.1
GTTCATCCATTGTTTACGCAACTGGACACACTTTCAACTGACTTCATTAAGAAGTCACTGTATTGTGTAACGTTAATACGGATATAGAAAGCTAGCATCATTACAGGCAAGGAGTTATGCTGCGTTCACATGCTCCACGGAAACTCCTTCGTAGTACTTTGACGTCTCAGTTCGGTGAACGGTTATCATCCTTATTGTCACTCTTCCCTCTTGGAAGCACTCGTCTCAGCACAACAACCAGAATGGCTCCTCAAAAGAACAGAGTATTCGTCATTGGAGTGGGAATGACAAAGTTTGAGAAGCCAGGAAAAGAAGACTTTGACTATCCCGACATGGCAAAGATAGCAGGCGAGAGGGCCTTGTCTGATGCTGGAGTCCCCTACTCTGCTATAGAGCAAGCCTGTGTGGGCTATGTGTATGGTGACTCTACCTGTGGCCAGAGGGCCATCTACCACAGCCTTGGCCTGTCAGGGATCCCCATCATCAAcgtcaacaacaactgctccacaGGCTCCACTGCCCTGTTCATGGCCCGACAGCTAATCCAGGGAGGTCTGGTTGACTGTGCACTAGCCCTTGGCTTTgaaaagatggagagaggctCCTTGTCATCAAAGTTCATGGACAGGACTAACCCCATGGACAAGCATATGGAGGTGATGTTCAACACATATGGGATGGCAGCAGCACCGGCAGCACCACAGATGTTTGGCAACGCGGGCAGAGAACACATGGAGAAATACGGTACTACACCAGAGCACTTTGCTAAAATCGCATGGAAGAACCACAAGCATTCCACCAACAACCCgtACTCTCAGTTCCAGGATGAGTACAGTCTGGACCAGGTCAAACAGTCCAGGAAGGTGTTTGAGTTCCTTACTCTTCTCCAGTGTTGtcctacCTCTGACGGTGCAGGGGCAGCTGTCCTGGCCAGTGAGGGCTTTGTGAGGCGCCATGGTCTAGAGCACCAGGCGGTGGAGATCTTAGCCCAGGAGATGGTCACGGACCTCGCAACTACCTTCGAAGACAATAGCTGCATGAAGATGGTTGGATACGACATGACCTCCCTGGCAGCCAAGAAGTGTTTTGAGACAGCGGGTCTGAAACCCAGTGACGTCAATGTGATCGAGCTACACGACTGTTTCTCTGCCAACGAGCTGATCACGTACGAGGCTCTGGGGTTGTGCCCAGAGGGTAAGGCTGGAGAGCTGATAGACAGAGGAGACAACACGTACGGAGGCCAGTGGGTGGTCAACCCCAGCGGAGGACTCATCTCTAAAGGACACCCTCTGGGAGCCACAGGTCTGGCCCAGTGTGCGGAGCTGTGCTGGCAGCTGAGAGGCCAGGCTGAGAGGAGGCAGGTCCCGGGGGCGAAGGTGGCCCTACAGCACAATATCGGCCTGGGAGGAGCTGTGGTCGTCACTCTCTACAGGATGGGGTTCCCTCAGGATGCCAGgTCCCAGATAGCGGCTGTCCCCACCAGAGCAGAACGTCTGGAGGGCTTCAGAGTCTATTCTGTCTTCCAGGAGATAGAGAACAAACTACAGGAGGAAGGAGTAGACGTTGTGAAGAAGATTGGAGGAGTTTTTGCCTTCAAGGTGACAGATGGACCCGAGGGGAAAGACGCTCTGTGGGTCGTAGACGCGAAGAATGGACACGGCTCCGTGAGCAACGACGCTGATAAGAAGGCTGACTGCACTATCACCATGGGAGATGAAGACTTAATGAAGCTGATGACAGGCAAGATGAATCCACAGACGGCATTCTTCCAGGGCAAGCTGAAGATCGCAGGAAACATGGGCATGGCCATGAAGCTTCAGAGTCTGCAGCTGGTGCCAGCCAAAGCCAAGCTGTGATTGGCTGATAGACCCTCAGCTCTGGAACTCCTGCCATATGTAGCAGTTATGCACATTCTCTCACCCCTTTCTCACCCctttctcacccctcctctcagctctctctaacctctctcacccctcctctcacccctttctcacccctcctctcagctctctctaacctcctTCACCcctcctttcatctctctctcacctctctctaacctctttCACCCctcctttcac
>XM_036986512.1
ATGTTGGTGTTGCTAGCTATCTAGTTTGAGAAGCCAGGAAAAGAAGACTTTGACTATCCCGACATGGCAAAGATAGCAGGCGAGAGGGCCTTGTCTGATGCTGGAGTCCCCTACTCTGCTATAGAGCAAGCCTGTGTGGGCTATGTGTATGGTGACTCTACCTGTGGCCAGAGGGCCATCTACCACAGCCTTGGCCTGTCAGGGATCCCCATCATCAAcgtcaacaacaactgctccacaGGCTCCACTGCCCTGTTCATGGCCCGACAGCTAATCCAGGGAGGTCTGGTTGACTGTGCACTAGCCCTTGGCTTTgaaaagatggagagaggctCCTTGTCATCAAAGTTCATGGACAGGACTAACCCCATGGACAAGCATATGGAGGTGATGTTCAACACATATGGGATGGCAGCAGCACCGGCAGCACCACAGATGTTTGGCAACGCGGGCAGAGAACACATGGAGAAATACGGTACTACACCAGAGCACTTTGCTAAAATCGCATGGAAGAACCACAAGCATTCCACCAACAACCCgtACTCTCAGTTCCAGGATGAGTACAGTCTGGACCAGGTCAAACAGTCCAGGAAGGTGTTTGAGTTCCTTACTCTTCTCCAGTGTTGtcctacCTCTGACGGTGCAGGGGCAGCTGTCCTGGCCAGTGAGGGCTTTGTGAGGCGCCATGGTCTAGAGCACCAGGCGGTGGAGATCTTAGCCCAGGAGATGGTCACGGACCTCGCAACTACCTTCGAAGACAATAGCTGCATGAAGATGGTTGGATACGACATGACCTCCCTGGCAGCCAAGAAGTGTTTTGAGACAGCGGGTCTGAAACCCAGTGACGTCAATGTGATCGAGCTACACGACTGTTTCTCTGCCAACGAGCTGATCACGTACGAGGCTCTGGGGTTGTGCCCAGAGGGTAAGGCTGGAGAGCTGATAGACAGAGGAGACAACACGTACGGAGGCCAGTGGGTGGTCAACCCCAGCGGAGGACTCATCTCTAAAGGACACCCTCTGGGAGCCACAGGTCTGGCCCAGTGTGCGGAGCTGTGCTGGCAGCTGAGAGGCCAGGCTGAGAGGAGGCAGGTCCCGGGGGCGAAGGTGGCCCTACAGCACAATATCGGCCTGGGAGGAGCTGTGGTCGTCACTCTCTACAGGATGGGGTTCCCTCAGGATGCCAGgTCCCAGATAGCGGCTGTCCCCACCAGAGCAGAACGTCTGGAGGGCTTCAGAGTCTATTCTGTCTTCCAGGAGATAGAGAACAAACTACAGGAGGAAGGAGTAGACGTTGTGAAGAAGATTGGAGGAGTTTTTGCCTTCAAGGTGACAGATGGACCCGAGGGGAAAGACGCTCTGTGGGTCGTAGACGCGAAGAATGGACACGGCTCCGTGAGCAACGACGCTGATAAGAAGGCTGACTGCACTATCACCATGGGAGATGAAGACTTAATGAAGCTGATGACAGGCAAGATGAATCCACAGACGGCATTCTTCCAGGGCAAGCTGAAGATCGCAGGAAACATGGGCATGGCCATGAAGCTTCAGAGTCTGCAGCTGGTGCCAGCCAAAGCCAAGCTGTGATTGGCTGATAGACCCTCAGCTCTGGAACTCCTGCCATATGTAGCAGTTATGCACATTCTCTCACCCCTTTCTCACCCctttctcacccctcctctcagctctctctaacctctctcacccctcctctcacccctttctcacccctcctctcagctctctctaacctcctTCACCcctcctttcatctctctctcacctctctctaacctctttCACCCctcctttcac

Function

symbol description
scp2 Enables several functions, including cholesterol binding activity; lipid transfer activity; and long-chain fatty acyl-CoA binding activity. Involved in several processes, including inositol trisphosphate biosynthetic process; lipid transport; and progesterone biosynthetic process. Located in nucleoplasm and peroxisome. Part of protein-containing complex. Biomarker of Zellweger syndrome.

NR:

description
non-specific lipid-transfer protein

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups molecular_function
GO:0032934 sterol binding molecular_function

KEGG:

id description
K08764 SCP2, SCPX; sterol carrier protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986513.1 False 1937 mRNA 0.53 15 82362119 82384840
XM_036986511.1 False 2084 mRNA 0.53 16 82362120 82384858
XM_036986512.1 True 1815 mRNA 0.54 16 82362682 82384858

Neighbor

gene id symbol gene type direction distance location
czib cssa14h1orf123 coding upstream 218 82359203 ~ 82361901 (+)
uck2b LOC106569706 coding upstream 3833 82341217 ~ 82358286 (+)
LOC110530769 LOC106569594 coding upstream 41353 82313294 ~ 82320766 (+)
LOC110530764 NA coding upstream 109740 82237716 ~ 82252379 (+)
LOC110530760 NA coding upstream 253606 82105100 ~ 82108513 (+)
LOC110530773 LOC106569595 coding downstream 141092 82525950 ~ 82535140 (+)
LOC110530778 LOC106590523 coding downstream 279337 82664195 ~ 82665021 (+)
LOC110530781 sppl2b coding downstream 343624 82728482 ~ 82758005 (+)
trnaa-ugc-28 NA coding downstream 477253 82862111 ~ 82862184 (+)
LOC110530786 LOC106569613 coding downstream 790876 83175734 ~ 83204194 (+)
G753585 NA non-coding upstream 75170 82286579 ~ 82286949 (+)
G753584 NA non-coding upstream 75577 82286100 ~ 82286542 (+)
G753563 NA non-coding upstream 124868 82236011 ~ 82237251 (+)
G753503 NA non-coding upstream 136413 82211501 ~ 82225706 (+)
G753502 LOC106569695 non-coding upstream 275832 82082317 ~ 82086287 (+)
G753658 NA non-coding downstream 56617 82441475 ~ 82441819 (+)
G753662 NA non-coding downstream 82929 82467787 ~ 82468327 (+)
G753664 NA non-coding downstream 87913 82472771 ~ 82473141 (+)
G753665 NA non-coding downstream 94148 82479006 ~ 82480067 (+)
G753668 NA non-coding downstream 100837 82485695 ~ 82485894 (+)
G753337 NA other upstream 435960 81922162 ~ 81931491 (+)
sdhc LOC106569582 other upstream 559834 81783282 ~ 81802285 (+)
G753205 LOC106569572 other upstream 874509 81486820 ~ 81487610 (+)
G752398 NA other upstream 1620174 80741604 ~ 80741945 (+)
G752357 NA other upstream 1728067 80631310 ~ 80634052 (+)
G754927 NA other downstream 870881 83255739 ~ 83257866 (+)
G755286 NA other downstream 1244514 83629372 ~ 83629738 (+)
G755277 NA other downstream 1268187 83653045 ~ 83654438 (+)
G755298 NA other downstream 1273239 83658097 ~ 83660046 (+)
LOC110529145 LOC106569623 other downstream 1401102 83785960 ~ 83788580 (+)

Expression


Co-expression Network