LOC110530773 (LOC106569595)


Basic Information

Item Value
gene id LOC110530773
gene name LOC106569595
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 82525950 ~ 82535140 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986516.1
GGTGCAAAGTTTCGTCCCATTTCAGTGGCATCcttgaaataaatgttttgcaCTTTTCAGCAGAGCAAGGGACACTTATGTGGATAGAATTACAATGAGACCTTTAAACATCTAAGGAAATCATCTCTCCGACTCTTCTCCCTAAGAGTGAGTTTTCTACCAGCATGAGTTCGGAGTGCACAAGCTACTACAGCGCAGAGAATGTGTTTATGAATGGCTCTTCGTGTCCTAAAGAAGGGAGCGATCCGAGCGCGACATTCTGCTGCGGATTTAACGATATCAAGTATTGCTGTGATGATCCCAACAGCTTTTTCCCTTATGAGTATGGATACATGTGGTGGCTCAGctTTGGGGCTCTGATAGGTCTGTCCATAGCAGCAGTGGTCCTCCTGGCCTTCCTCATCACAGTCTGTGTCCTCTGCTACCTCTTCATCGCCACTAAGCCCAGTCGCCTTGACAACGGCCTGCCACTACGACCACCAGGGTTGGACCCCCGTGAGGGCCCCAGCCACTCCGGCCCAGCACCGTCCATCGGCCCTCAGGGCTTCAGGAAGCACTTCTTCAGCAGGAAGCTGGACTGTGACAACCAGCCACCCGACCCTGAGAGATTGTTCCAGAGGTGCTTCGTCACCACCGTCAACATGGAGGGCCCATCGTAGTGCTCTTAATATGTAAGGCACTTTGTAGGATGCTTAGGAGGTAATGGAGGGCCCTTCGTAGGACGcataaaggcccagtgcagtcaaaaacgtgatttatTTGTGTTGGATATATATTTAGGTTGGGATAATACTGtgacatttttttaataatgatGATGCCCtattagtgtaagagctgtttgtaaaagactgcctgaaatttcagcctgttttggtgggatggagttttggcctgactggtaacatcaccaggcagtaaattggttaatagattAATaggccaataagaaagagagttccaaaaactcagccaataacagctagttttcagttttctcctcctcctttcaaAGTTCTTGCATGAGAAATTGCTCTTGTTAAGAAGCCATTGTTTCGTTTTGACCATTTTGATTCAAAACAGTCACATTAAAGGTACTTaactgttacccagaaatgatttgatattaagataaaaatgtatgcattgggcctttaatatGAAGGGCGCTTCGTAGGACGCTGTCTTCTAAAGGCAGCCAGATGCTTACTTGTTCTGACTGGAAATGAGTGTATAGAAGACTACGCCACACAGTGGGAGGACTGGAGAAGCAACAACCATTAATGACCATGTTCTGTATGGACTGGAGTAGTACTGAGTTTGTCAACATTCAAACAGTGGTTGGCTGGTTAACCCACTCTAGAAACATTTAAGTTGAGCTTCTTTTTTACTGTTGATGAAAATAAACTTCAAAAACAGAAAGACAGAAGTCATACTGGACAACTGTGGAGCCGAAGCTTTGTCTGTCTTGCCTCACCTCTGTATTCCAATGTTGTTTGATGAAGCAAGAGAAAGAACAGAGGGAAATATTTTCAGTAATTATTTTGTGTTGAGAAATCCATTTTAACTGTGTCTGATTTAACAGAAGCTCGTGTCTTCAAGACAGACACTCTCAGATAACAAGCTCCTCAAACCAGCATTACTGAACTTCAACATCGACAGTTTGTGTGATTCTTCACCTTCTATCTGGAAACTGTTTTCGATCGTCTACGTGTCTGTGTGTAAAATGTTTATTTGGTTGAGAATGTTGCCAATGGGACAACAAGTGTCTACAGCGTATTTGCATCCAATAGAACTGATAAGGAAGTAAATCAGACATAGCTCAACACATAACAAACAGAAAGCCTCAGAGTTCCAGTTACCTTAACTTGGCCCCTGTTTTCAAAACGTTCAAGGTGGAATCCATAACGGTAAAACTGccatattacaacaacaaataaGTCACTCCCTCtgacatcttcatcatcatcatcatcatcatcatcattccaCGCGCGATAGACCAACAGCGTACGTactgtaattatttattttcacgATGCTGGACACTCCACAACTCGGTTTcgtcaacaaaaacaataacaaatgtgcTGGCGCGCACAGCGGCGTCGTTTGTCCTTATGTGGATTTCAGCTTTAAAAAGGTCATGTCTGCTATAATATAAAATACACGAAATTGCTTGTTGAAACATTGCATGTTGAACTGTCATCTGTAAACGGTCATGTTGGATTTTCTCAAAACATTGATCATGGCAGAGATGATAGAATGTTATGTTCCACCTCCTGTCCATGCTGCTGTCCCCATGTTCAGAAACACTTTCATTAATGTGGTCATTGTGTCACCAATTTGCCATATACAATGGTTGCATGCCATGAGGCATCAGTTGTGTGAGTCACTTCTTTGTTAGTCATTGCTTCAAATAGAGAGTAACTTGTCAAAGAGGAAAGATGTTGCACCTTTATGATGTGTTATCACAGCAGGCACCACGTTTTATGTTTTCGCAATCTATTAAAGTGTGTGGCTGAGTGCACAACACATTAAAATGTACTTACAAAAATAAATGCATGTGGCCTTTCAATATTCAAAGTgctttataaaaataaataaaaatatttctttatatacatttgaaaaaagttTGAAGCAGATGCTATATCAATTTGTGATCAAACATGTACATAAGCTATCCAAGAGCACGGAGCTCTGACAACATCCCCATGTGGTTACATAAAACACAAACTCAAAACGGGACAACTGTTGACGAGATCGGGGGTGTTTGGAGCTCACCCTCTCCAACATGAACAGCAAAACACAGTGTATGTACATAAagtatatacacattatatatacactgtatgtatCTATGTACATAATCTCCATATATGCCTCCGGATAAAGAGGAACATAGGAATGAAGAGAGTAAAACCATTCTGCCACTCAGTGTTGATGACGTCACCATTTCCAACCACAAttaagggctctattcagtctgtgaacctgaagcgttacagattccacaatagaaatgtaaaggtaattttcGACTGAGCCGAcataccgtgaatgcagtctccgttAAAATCTGGAACATTACATTTTCAATCACCTTGTAAATCTGAACTCCCAGAACGCGGATTGAAAAGAGCCCCGAGACATCAAACATCTCATCTTCTATTCTCCTGCACCTACAACTACGCTGTCCGGACTTCTTTCCCCATTCCCCTCATTATAAAAACAGTGTGATTAAAGCACTGAGTCAATAACAGGGAAGAAGGAGTAGACAGATGTCCATTATTTCTCTCATACACATGGTTCAATACAGTCCTTGAGAAGACAGAAAGATCAGCTTCAAAAGAATATTATCTTCATCAAGCGAGGACCGCACAAACGAAGCGATCGATCGCTGGTGAAGATAAATGGGGACGAGAACAAAGTCATCCCCCATAACCCCATACTTATCTTGAGAACGCTGCAGTGAACACATAAATTGAAGCGACAGTAACATGAGCATGGTTACCATTTCCCTACTCATTATAAAGTGTGTTGATGACGTTGATGACTGTTTGAGAATCTAATCAGTTTCCCACATTGATTCAATGTCGTCACattgatttgttgttgttgttgttgaaatgacatggaaacagtgttaattcaaccagtttttacccagggggggggggggcatgtcatCATCAACACTATGGatatattggggcg

Function

NR:

description
PREDICTED: membrane protein FAM159A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986516.1 True 3720 mRNA 0.42 3 82525950 82535140

Neighbor

gene id symbol gene type direction distance location
scp2a scp2 coding upstream 141092 82362119 ~ 82384858 (+)
czib cssa14h1orf123 coding upstream 164049 82359203 ~ 82361901 (+)
uck2b LOC106569706 coding upstream 167664 82341217 ~ 82358286 (+)
LOC110530769 LOC106569594 coding upstream 205184 82313294 ~ 82320766 (+)
LOC110530764 NA coding upstream 273571 82237716 ~ 82252379 (+)
LOC110530778 LOC106590523 coding downstream 129055 82664195 ~ 82665021 (+)
LOC110530781 sppl2b coding downstream 193342 82728482 ~ 82758005 (+)
trnaa-ugc-28 NA coding downstream 326971 82862111 ~ 82862184 (+)
LOC110530786 LOC106569613 coding downstream 640594 83175734 ~ 83204194 (+)
LOC118965639 NA coding downstream 664199 83199339 ~ 83204020 (+)
G753684 NA non-coding upstream 16348 82509266 ~ 82509602 (+)
G753673 NA non-coding upstream 34681 82490956 ~ 82491269 (+)
G753672 NA non-coding upstream 36747 82488988 ~ 82489203 (+)
G753668 NA non-coding upstream 40056 82485695 ~ 82485894 (+)
G753665 NA non-coding upstream 45883 82479006 ~ 82480067 (+)
G753693 NA non-coding downstream 6469 82541609 ~ 82542423 (+)
G753714 LOC106569597 non-coding downstream 36100 82571240 ~ 82575943 (+)
G753731 NA non-coding downstream 66749 82601889 ~ 82605827 (+)
G753739 NA non-coding downstream 79223 82614363 ~ 82614581 (+)
G753733 NA non-coding downstream 119181 82654321 ~ 82678160 (+)
G753337 NA other upstream 599791 81922162 ~ 81931491 (+)
sdhc LOC106569582 other upstream 723665 81783282 ~ 81802285 (+)
G753205 LOC106569572 other upstream 1038340 81486820 ~ 81487610 (+)
G752398 NA other upstream 1784005 80741604 ~ 80741945 (+)
G752357 NA other upstream 1891898 80631310 ~ 80634052 (+)
G754927 NA other downstream 720599 83255739 ~ 83257866 (+)
G755286 NA other downstream 1094232 83629372 ~ 83629738 (+)
G755277 NA other downstream 1117905 83653045 ~ 83654438 (+)
G755298 NA other downstream 1122957 83658097 ~ 83660046 (+)
LOC110529145 LOC106569623 other downstream 1250820 83785960 ~ 83788580 (+)

Expression


Co-expression Network