XLOC_025907 (zgc:173575)


Basic Information

Item Value
gene id XLOC_025907
gene name zgc:173575
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 62290024 ~ 62297374 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00050776
atgagtgatccagaaccctgcagaattaaacatgaAGACACTGAACAACAAATAGaccttaTTGAAGAGTGTGAGGAGAATAAAGAAGAGGAACaccatgtcaaaattgaggacaaaactcatttacagactgatggtattttcaAAAGGAGAGACAAGAGTGATTTTACCTGCACCCAGTGTGGAAAGTGTTGGGCCAGCAGAAGCAGGCTtgagattcacatgaggatccacactggagagaaaccattcacctgcactcagtgtgggaagagtttcaaacAATCATCACACGTTACtcgacacatgatgatccacactggaaagaactCATTCAcgtgcactcaatgtgggaagagtttcagccaattatcCAACCTTAAaaatcacatgaggatccacactggagagaaaccatacacatgcactccatgtgggaagagtttcagccactcatcaacccttaatcaacacatgaagatccacactggagagaaaccattcacatgcactcaatgtaggaagagtttcagcaaatcatcactACTTTATACACACATGcgggtccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcagccaatcatcacaccttattaaacacatgaggatccacactggagagaaaccattcacatgcactcggtgtgggaggagtttcagcaaatcatcaaaccttaatcgacacatgaagatccactcTGATGTGAGAAAGTGcttggagtgtgagaagacttttattacaactGGAGAATTAAAACGGCACCAGAGGATtcatgctggaaaaaaaaaagtacaagtgttcacactgtaa

Function

symbol description
zgc:173575 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080218-25 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

Ensembl:

ensembl_id ENSDARG00000115456

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00050776 True 852 mRNA 0.42 2 62290024 62297374

Neighbor

gene id symbol gene type direction distance location
XLOC_025906 zgc:174624 coding upstream 13847 62271320 ~ 62276177 (+)
XLOC_025904 NA coding upstream 39450 62207834 ~ 62250574 (+)
XLOC_025905 BX470259.3 coding upstream 63434 62219158 ~ 62226590 (+)
XLOC_025903 znf1024 coding upstream 80673 62205858 ~ 62209351 (+)
XLOC_025902 sco1 coding upstream 86313 62196672 ~ 62203711 (+)
XLOC_025908 NA coding downstream 6668 62304042 ~ 62306549 (+)
XLOC_025909 znf1124 coding downstream 20616 62317990 ~ 62324799 (+)
XLOC_025910 zgc:173575 coding downstream 29958 62327332 ~ 62329712 (+)
XLOC_025911 BX470259.1 coding downstream 41890 62339264 ~ 62346128 (+)
XLOC_025912 iqck coding downstream 56276 62353650 ~ 62360828 (+)
XLOC_025429 BX649540.1 misc upstream 32040988 30248739 ~ 30249036 (+)
XLOC_025898 NA non-coding upstream 228186 62054694 ~ 62061838 (+)
XLOC_025890 NA non-coding upstream 905832 61357205 ~ 61384192 (+)
XLOC_025891 NA non-coding upstream 912969 61368489 ~ 61377055 (+)
XLOC_025889 NA non-coding upstream 946316 61340693 ~ 61343708 (+)
XLOC_025913 NA non-coding downstream 71350 62368724 ~ 62384693 (+)
XLOC_025914 NA non-coding downstream 126961 62424335 ~ 62542931 (+)

Expression


Co-expression Network