cplx4c (LOC106569619)


Basic Information

Item Value
gene id cplx4c
gene name LOC106569619
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 83316744 ~ 83328050 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986862.1
ATGTCGTTCATGATGAAGGCCATGTTGGGGAGTAAGTTGAAGGATatgactggaggaggaggaggagaggttgaggtgcCAGCAGGCGATGTGAAGGAGACCCCTGAGTCTAAAGGAATGTCCAGAGAGGAGTTTGAGGACTACCAGCGACAGCTTATAGAGGAGAAGATGGAGCGGGACAAGGAGTTTGCCACAAAGAAGGCGGAGAGGGCCAACCTGAGGTCCTGCCTGCGGGACAAGTACCGCCTACCTGAGagTGGCCAGGACGAAGCCATGGTGAAGATGGCGGGAGACGACCTGGATCTCCCTGAGGACCTAGCCAAGATggtggatgaggatgaggaggaggaggcggtgAATGACTCACTACTAGGACAGCTACATCAACTGCAGAACATGGACATGGACCAGCTGAAGACCAAAGCCCAGACCACCATGACAGAGATACAACAGGTGGCTGAGGAGAAGTGTGTCGTCATGTGAAGAGTGATCATcagacttcttcttcttcttctacccaTTGATCTTTCTTCAGCAATTAAGCAGTCCATTGTGTGAACTTCTACGTCAAGTGGGATTTACCCAACAAGCACCAAGCCTACGTCTTTGTTATAATTATACAATATTGCATGTTAATCTTCACAGAACCACCTAATCATTCTGTTATTCAGTTGCCTCAAAAAATATGAATTGCTGAGGCGCTGTGAAATCATGCTGTATATTGTTGCTAATGACGATCACCTCCTCTCTGTTCAACTTCCACACAGAAACAGAATTAATAGAATAGACAAAGCCCCTCAGTCCACGGGTATTTGACTGGTACACTCAATATGGCCGCCGGTCCACCCATCACAAAATGTTGACTTCAATGGGAATATCtgttctagtaattatatttttatGCATCCACATCCGAACCGGTTGAAACAGAGTCCAGACTGAGTATTTGAACTTTCACACTAATAATTCAATactaaactgattatggcagtaggccgAGAATGGAAAaagacatgtaaacaccttactctgcttatgTCAATTGGCGTGAGGTCAAAATCAAAGGAAGCATACATCGATTTacaacacctggttttctgagcattCTTTCAAATTGTTAGGACACGTAAACAGCTTAATCGGCATTCCAGTAGCATTGCagctgtgtatttgatctgcTCATGCTCCGGTAGCGCAAGCTTCCCTCTTATGCACGAGTTAAGTGAGTTTCGGAAATACTGAAAGTCTGCATCTCAGAAGTAGTTTACACATGCAAACTTTATATGTAcaaactcagaatcaaataggcTTCGAGAAAATTACATGGTCACTGGggtagaacgtttattttgattCACGATTTTCTGCATTAATAAAAGTTTCACGactaaacaggattattagggaaatcgtttATCTTCTATGGGATTGGTGTCCCCCCCCCCCGCGGGACgattgagctaacgtaggctaataagatt

Function

NR:

description
complexin-4-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
K15295 CPLX3_4; complexin-3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986862.1 True 1481 mRNA 0.44 3 83316744 83328050

Neighbor

gene id symbol gene type direction distance location
LOC110530792 NA coding upstream 35219 83231275 ~ 83281525 (+)
LOC110530786 LOC106569613 coding upstream 112550 83175734 ~ 83204194 (+)
LOC118965639 NA coding upstream 112724 83199339 ~ 83204020 (+)
trnaa-ugc-28 NA coding upstream 454560 82862111 ~ 82862184 (+)
LOC110530781 sppl2b coding upstream 558739 82728482 ~ 82758005 (+)
LOC110530794 LOC106569618 coding downstream 33338 83361388 ~ 83380929 (+)
calr3b LOC106569608 coding downstream 62644 83390694 ~ 83399592 (+)
LOC110530798 LOC106569607 coding downstream 77309 83405359 ~ 83473827 (+)
LOC110530806 tpm4 coding downstream 384264 83712314 ~ 83727620 (+)
LOC110530807 rab8a coding downstream 400019 83728069 ~ 83734239 (+)
G754989 NA non-coding upstream 15766 83300758 ~ 83300978 (+)
G754946 NA non-coding upstream 50438 83259999 ~ 83266306 (+)
G754935 LOC106569611 non-coding upstream 71969 83242328 ~ 83244775 (+)
G754916 NA non-coding upstream 92632 83223272 ~ 83224112 (+)
G755002 NA non-coding downstream 1973 83330023 ~ 83330260 (+)
G755014 NA non-coding downstream 25160 83353210 ~ 83353486 (+)
G755027 NA non-coding downstream 53266 83381316 ~ 83382316 (+)
G755028 NA non-coding downstream 54767 83382817 ~ 83383032 (+)
G754927 NA other upstream 58878 83255739 ~ 83257866 (+)
G753337 NA other upstream 1390585 81922162 ~ 81931491 (+)
sdhc LOC106569582 other upstream 1514459 81783282 ~ 81802285 (+)
G753205 LOC106569572 other upstream 1829134 81486820 ~ 81487610 (+)
G752398 NA other upstream 2574799 80741604 ~ 80741945 (+)
G755286 NA other downstream 301322 83629372 ~ 83629738 (+)
G755277 NA other downstream 324995 83653045 ~ 83654438 (+)
G755298 NA other downstream 330047 83658097 ~ 83660046 (+)
LOC110529145 LOC106569623 other downstream 457910 83785960 ~ 83788580 (+)
G755363 NA other downstream 558764 83886814 ~ 83889637 (+)

Expression


Co-expression Network