LOC110530794 (LOC106569618)


Basic Information

Item Value
gene id LOC110530794
gene name LOC106569618
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 83361388 ~ 83380929 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614061.2
ACAAGCGCTAAAACAAGGGTTTATTAGAATACATTTGCTTCATGTCTTTCCTGTGCAGGCCAGTTTGTGTCCAGCCAAAGCATACTACATCGCtgtatatctctgtatattctcTCATATATTGTGTGTAATGAAGGGATTACAAGAACCATTATCTTTTAAACAATAGATTTTCTGAAAGAAAGTTTTGTCAAAGCCTTCATTAGCCAAGGCCTCCCTCTGTGGTCTGAATACAGgccacattttgcagcaattacttGACCAGAAAACAACTGCCAATCATTCTTAAAGGGGAAGGATTCCAATTAATAAACCTCTTAAATACTTTGGTTTCCCTCAGTATCTAGTGAACAGTCAAACAGACAGTGGCTATAGCCAGAGGGGAGGAACTCCATTGAGTGTTCCTACTTAGTAGTTATCGTTGAAGACTTTGAAGGACTTTATCCGGGGAGGTTGGGAGGAGCAGGTGCACAGCTAACGGAACTCCCATCCGCTGTCATTTGCAACTTGTCGGACAGAGGAGCCACAACTCACGGCTCAGCATTGTAAGAGGATGTGTGTAGTATAACTAAGCTACCTGTATAGAGACTGACAGGAAATCCAAGGACGCAATTCTgctctggctttctctctcttgaTATAATCCCTATGTGACAAATGACAACCTGTAGTGCTGTCTGTCACGTGTCCAACTATATCTGAGGGTGGCCCCTCAGCAGTAGGAAGAGGTCCTCTGGATACATTTGTCGATGGATACCTTGGGAATGGTGGGCGACGGCTGCCTGTCACCAGACAACTACCATGACATGCTGAAGGGAGGGGGGTCTAGCGGAGGAGGCCGGGTCCACAGCATCGACGTGATCTTGGGCTTCAGTAAGGACCAGGACCCTCTGCTGACCCCTGTGGGGGACGTGGGGGTCCATAATGTGGCCACTGAAGGCCTGGAGGACCACCAGGGGAAGCAGGTCAAGTCAGACCCCTACGGACAGCTGGCCAGCCTGGGGGACAGCAACAGCACTCAATTTCACGAGTCAGGCCTTTTCTCCAGTGATAAGTGTGATGGGGACCTGGGGGACCTCCAGAAGGGGTTGGACAGCGACAGGGGGAAGTCACCTGAGCCACCAGAGGAAGACCACCCCAGGAAGAAGCACCGGCGTAACCGCACCACCTTCACCACCTACCAACTCCATGAGCTGGAGCGGGCCTTTGAGAAGTCCCACTACCCTGACGTCTACAGCAGAGAAGAGCTGGCCATGAAGGTTAACCTCCCAGAGGTTCGCGTACAGGTGTGGTTCCAGAACCGTCGGGCTAAGTGGAGACGTCAGGAGAAGATGGACTCCAGCTCCTTGAAGCTCCACGACTCCCCCATGCTGTCCTTCAACCGGTCGCCCATGCCCTCCAACATGGGGCCCATGTCCAACCCATTACCCCTGGATCCCTGGCTGGCCTCGCCCATGTCCAGTGCCACCCCCATGCATACTATCCCTGGCTACAGGGCCCCAGGGCAGGGCCCTCATCTTCAGCCTGCCTACCCCAGCCACTCCCACAGCTTCCTCAACAGCCCCCCAGTACATGGTGTGGTGCACCAGGGGATGGTGCAAGGAATGCAAGGGAGGCAAAGCATGCAGTCAATGGCTCCGCCTCCCTACCAGTGTCACCCTAGCTTCAATGATAACTACCCTATGCATGAGGAAGTGGAACGTAGCTCCAGCATCGCAGCGCTGAGGATGAAGGCTAAGGAGCACCTTCATTCCTTGGATAAAACCTGGCAGCACATGTGATCCATTGGAGAGGAGATGTTCTGTATGAAGGCTGTCAACACGTGATTGTAATCACAAAAACAAAGACGTTCTGTATAAAGGATGGTCAACTTCAACACGTATGATTGTAATCACAAAAACAACGACGTTCTGTATAAAGATGGTCTCTATTTTCCTGGATATCAATTGAATAGGGGGGCACACATCCTGATGGAGAGGATATGTGGCACCTTGTCAACTTGTTGAGTGACTTGTGAAAACAGAACTGATGATCAATttatcatcaagctttgatgatcGATTTATACTCCGGATTCAGTTGAACTCGCACTATAGTGGTCTTGCGATGGCGGGCTGGATTGTTGACCAATATGCCCCCCTATCCGTGGAAAGGGACAGGAGAGACATCTAATACTGCGGAATTCCAtattagggccaggagttttcctgaccatgtgagCTGACTACAATAAGAAATTCTCCTGGCCTAGATGAGGCAATATTATGACCTGACCAGAGAAATCTCCTGGCCTAGACGAGGCAATATTATGTATGACCTGACCAGAGAAATCTCCTGGCCTACATGAGGCAGTATGAGCTGAGACAGTGACTCCTAAAATGTTCTCAGAAGACTCAGTCCTGGCGGATCGAGGTTGAGTTGAGAAAATCCTCTATCTTGGGTAATCTGTCACGCCTGCTAATTTGGTCGGACAACCGTACCACTTAACACCTAATTAACAGTTTTTAAAGCGATTAACCTCAGGTTAACAATTGATGGACAGCTGCCCTCAGAGTCTCCCTGAAACCCCTTAGATCCTATTCAAGGCCTGATAGTCAGTCACATCCTTTCCTCCTTTTCTTTCCTAAtttcctttcctccttctctattcctctcccatTGTTTTACAGAGATGCTGCTAGATTGTTAGTTTCTGttcatacacacaccacactaggattTATACATTAGAGTGTCTGACAGACTACTACATGTGTGGTGGTGTACAGCGTTGTGgttaattccatttcaattcagtcaaatCCTAATTTCCCGAAATTCCAAAGCATTGAGGAAAATTTGAATTGAAATTTGAGTTTACTTCCTAAATTCTCAAAATGCAACCCAACCCTGTGCACTACCACACATGTGATAGTCTGTCATAAATCCTTCTAACACATCCTATTAGTTAGTGCTGCTTCTTGATGTATTGTTGACAACAGGGGAGGCAGGCAGTCTCTTCATCATAGTGCTGTTCTGTTTTTACATGGCTTAAAGCGGTCAGCAGTACAATAACCAAGCGTTTTCCCCGCCCCTGTTTCAGAGGAATGGGGCTGGAGTACTGTAACCACTCTCAAGTTCatggacagagctatggatgcaagttttcaccatgttttgaggctatatagtgtttgtttacattgacTTTGTTTACAAACGTTGGCGTAAAACAgtcttatattttgggttctcacgAGGTACGGCAGTTGAAATAAGCTCATTAGGAATAAGAGATATATTTTTTggaagaatcaatgggtacatatcattaatgtataagtccaaaaatggatgtagcaactgctgattgcccctttaagtggCAGCAGTTACTATAGGGCACAGGAAGTACAAGAGGGTGTTCTTTCTATGCATTATGGTTATTCGGAAATGAGGGGTCACATactgagtgcgtgtgtgtgtgtgtgtgtgcgtgtgtgcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgcgtgtgtgcgtgtgtgcgtgtgtgcgtgtgtgcgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtagccccaGAATGagagctgcctgcctgtctgatgTAACACTTCAGTGGGTTGACTGATTCATTGTTCAGGACTATTGATTCTCCTCTTGGTCTGAAGCTCCTGGAACCAAACGGTTTAGAGGCTGGACTAACTAATGGTCATTAAATCCACCagaacagggttggggtcaattcaaataataataaaacaaacttttaaaagttttgatacacatacacacagcttcTACTTTTCAGTCTATTGAGAAGTCACTGAAAATATATGCCCTTTGCTCAGTTTACTTCTTGTTTGACTGCCTTCAACACTGCACCTGAAATCCTGAGGAAAGCACCTTGCTGTTGAATCATTGGTTAACTAGtattaaatgttttacattttagcCATAGAGTGTAGTTACCTTATTTTTCTCGTAAAACCCACCAAACCCCGGGCCCTCTTGTGGAGTTACATCTGGAAATATATCAAAAATACGGAGATCAACATTatgattttatatttttttaaataaaacattcaTGGGATACTTCTTGATACATTCCTACACACAGAAGTGCATTTTGAATTTTTGTGGGATATAGTAGTTAGTAAAAGCcaaagaatattttttttttaaacattttttactgGACCCCCCCCCTAAATCTATTAAGTATTTGTAAAACATTGTCTAATATACACTGCGTGTacaaatcattaagaacaccttcataatattgagatgcacccccacctacaaggtgttgaaagcgttccacagggattctggcccatgttgactccaatgctttccacagttgtctcaagttggc
>TU857557
AGTATTTGTAAAACATTGTCTAATATACACTGCGTGTacaaatcattaagaacaccttcataatattgagatgcacccccacctacaaggtgttgaaagcgttccacagggattctggcccatgttgactccaatgctttccacagttgtctcaagttggctggatgtcctttgggtggtggactattcttgatacagacggtaaactgttgagcgtgaaaaacccaacagcattgcagttcttgacacaaaccggtgcgcttggcacctactaccataccccgttcataggcacttacagttgaagtcggaaatttaaatacaccttagccaaatacatttaaagtcagtttttcacaattcctgacatttaatccgagtaaaaatgccctgtcttaggtcagttaggatcaccactttattttaagaatgtgaaatgtcagcataataatagagagaatgatttatttcagcttttaattctttcatcacattcccagtgggtcagaagttaacatacactcaattaatatttggtagcattgcctttaaattgtttaacttcggtcaaacatttcgggtagtcttccacaagcttcccacaataaattgagtGAATTATGGCCcatccctcctgacagagctggtgtaactgagtaaggtttgtaggcctccttgctcgcacacgctttttcagttctgcccacaaatgttctatgggattgaggtcagggctttgtgatgatcACTCCAATACAacttggttgtccttaagccattttgccacaactttggaagtatgcttggggtcattgtccatttggaagacccatttgcgaccaagctttaacttcctgactgatgtcttgagatgttgcttcaatatatccacatcctccaccttcctcatgatgccatctaatgtgtgaagtgcaccaatccctcctgcagcaaagcacccccacaacatgatgctgccacccccatgcttcacggttgggatggtgttcttcggcttgcaaacctccccctttttcctccaaacataacgatggtcattacggccaaacagttctatttttgtttcatcagaccagaggacatttctccaaaaagtatgatctttgcccccatgtgcagttgccaaccgtagtctggctttttatggcggttttggagcagtggcttcttccttgctgaggatgcctttcaggttatgtcaatataggattagtttttactgtggatatagatacttttgtacctgtttcctccagcatcttcacaaggtcctttgccgttgttctaggattgatttgcacttttcgctccaaagtacgtttatttctaggagacagaacgcatctccttcttgAGCtgtatgtggtcccatggtgtttatagatgcgtactattgtttgtacagatgaatgtggtaccttcaggcatttggaaattgctcctaaggatgagccagacttgtggaggtctacattttttttgaggtcttggctgatttcttttgattttcccatgatgtgaagcaaagaggcactgagtttgaaggtaggcctggaaatagatccacaggtacacatccaattgactcaaatgatgtcaattcacAAAtcagacttctgacccactggaattgtgattaagtgaaatcatttgtctgtaaacaattgttggaaaaatgacttgtgtcatgcacaaagtagatgtcctaaccgacttgccaagactatagtttgtaaacaagaaatttgtggagtggttgaaaaacgagttttaatgacaccaacctaagtgtatgtgaacttctgacttgaactgtgtgtgtgtgtgtgtgtgtgtgtgtgaacttctgacttcaactgtaaatgtgttgtcttgcccattcaccctttgaatggcacacatacacaatccatctctcaaggcttaaaaatctttaacccgtctcctccccttcatctacactgattaaagtggttTAAAAAGGTGATAAGGgagcatagctttcacctgggttcacctggtcagtctatgtcatggaaagagcaggtgttcttaatgttttgtaaactcggTGTACTGTTCAACTTGATTCTCTGTTCAGTCATTTGTAATGCATTTTCTGTGCTGTACCTTGAattcatttatttacattttgaCATTATTTGTGTTGTATTTAGATTCAATGTTCTTTGATTGTAATAAAAACACACTAGAAACAGTGTGACAGAAGTTCCTCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614061.2 False 4395 mRNA 0.46 4 83361388 83378832
TU857557 True 2258 lncRNA 0.41 1 83378672 83380929

Neighbor

gene id symbol gene type direction distance location
cplx4c LOC106569619 coding upstream 33338 83316744 ~ 83328050 (+)
LOC110530792 NA coding upstream 79863 83231275 ~ 83281525 (+)
LOC110530786 LOC106569613 coding upstream 157194 83175734 ~ 83204194 (+)
LOC118965639 NA coding upstream 157368 83199339 ~ 83204020 (+)
trnaa-ugc-28 NA coding upstream 499204 82862111 ~ 82862184 (+)
calr3b LOC106569608 coding downstream 11862 83390694 ~ 83399592 (+)
LOC110530798 LOC106569607 coding downstream 26527 83405359 ~ 83473827 (+)
LOC110530806 tpm4 coding downstream 333482 83712314 ~ 83727620 (+)
LOC110530807 rab8a coding downstream 349237 83728069 ~ 83734239 (+)
LOC110531027 NA coding downstream 398862 83777694 ~ 83781404 (+)
G755014 NA non-coding upstream 7902 83353210 ~ 83353486 (+)
G755002 NA non-coding upstream 31128 83330023 ~ 83330260 (+)
G754996 NA non-coding upstream 42212 83311759 ~ 83319176 (+)
G754989 NA non-coding upstream 60410 83300758 ~ 83300978 (+)
G755027 NA non-coding downstream 2484 83381316 ~ 83382316 (+)
G755028 NA non-coding downstream 3985 83382817 ~ 83383032 (+)
G755029 NA non-coding downstream 5447 83384279 ~ 83384648 (+)
G755030 NA non-coding downstream 6081 83384913 ~ 83385113 (+)
G755045 NA non-coding downstream 42793 83421625 ~ 83422251 (+)
G754927 NA other upstream 103522 83255739 ~ 83257866 (+)
G753337 NA other upstream 1435229 81922162 ~ 81931491 (+)
sdhc LOC106569582 other upstream 1559103 81783282 ~ 81802285 (+)
G753205 LOC106569572 other upstream 1873778 81486820 ~ 81487610 (+)
G752398 NA other upstream 2619443 80741604 ~ 80741945 (+)
G755286 NA other downstream 250540 83629372 ~ 83629738 (+)
G755277 NA other downstream 274213 83653045 ~ 83654438 (+)
G755298 NA other downstream 279265 83658097 ~ 83660046 (+)
LOC110529145 LOC106569623 other downstream 407128 83785960 ~ 83788580 (+)
G755363 NA other downstream 507982 83886814 ~ 83889637 (+)
G754946 NA non-coding upstream 112366 83259999 ~ 83266306 (+)

Expression


Co-expression Network