LOC110530798 (LOC106569607)


Basic Information

Item Value
gene id LOC110530798
gene name LOC106569607
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 83405359 ~ 83473827 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986549.1
TTTATTCGGTGTTACTGAAAATAACAAGTTTTCCCTCCCCTTGCATTCATGCTCCTCCACACCACTGATGTCAACAATGTCGAGCTGTCAGTGGTGAGGCGCGTCGTAGCTTCAAGGGTGTGCGCGCTCTCGACACAGCAGGAAATATGGCGGCGCTCATGACTCTCACCCAGTTATCGAGTGGAAACCCAGTTTACGAAGTCTACTACAGACAGGTGGATCTGGGAGACACTGGGACAGTAGGAGCTGCAGATGCTGCTCAGTTCCTGAAGAAATCAGGCCTTTCAGACAGTACCTTAGGAAAAATCTGGGATTTGGCCGATCCAGATAGGAAGGGCTTCTTGGACAAACGGGGTTTCTTTATAGCGTTGAGGTTGGTGGCCTCAGCTCAGGGCGGCAACGACATCAGTCTCAACAACCTCAATCAGACTCTAGCAGCACCCAAGTTTAGAGACACAAATACTCCGTTGCTCAGCACATCGCTGAGTACACCTTCATCTGATTCCCACTGGGCTGTAAGGTCTGATGAAAAAAGGAAGTTTGATGGCATCTTTGAAAGTCTTCTACCAGTCAACGGTCTTTTGTCTGGAGACCAAGTCAAACCTGTCCTGATCAACTCCAAACTACCCATGGATGTGTTAGGAAGGATTTGGGACCTCGGTGACGTGGATAAAGATGGACACTTGGACAGAGAGGAGTTTTCAGTGGCCATGCACCTGGTGTACAGGGCTATGGAGAAGGAGCCTGTCCCTTCCGTcctaccctcctccctcatccctccatccaagAGGAAGAAGTCTGCGGGGGCTCTGCCTGGCGCCGTCTCCGTCCTGCCTCCCTTGTCTGCCCTCTCAGGCCTGTCTGGTCTGTCTCGGACAGCCAGCTCTCCTCCCCTGCCCGGCGCTGTAGCGGCTCTGCCTGGCTTGTCTGGTCTGTCTCGGACAGCAAACTCTCCTCCTCTCAAAGACACCCTAAACTCCACTCCATCTCACAGAAGCATCACCTCCATCAACAGCGCTGGCAGTCTCTCTCCTAAACCTTCGTTCAAAGCCCCCTCACAGTCACCTGCAGTAGTGAACTGGGTGGTCCCGGTGGCAGACAGAGGACGTTATAATGACATCTTCCTGAAGACGGACACAGACATGGACGGTCTTGTCACCGGAGGGGAAGTCATGGAGATCTTCATGCTGTCCAACCTTTCTAAGACCATGCTGGCACAGATCTGGGGTCTGGCTGACACCAAGCAGACAGGAAAGCTGTCCAGAGAGCAGTTCTCTTTGGCCATGTGGCTGATCCACCAGAAAGTCATCAACGGATTGGACCCTCCCCAGACCCTCACAACTGAAATGATACCCCCCTCTGAGAGGTCCACCACCTCTGTTCTTgacagcagcagttCTACAGAGTCAGCTGACCTGACAGGCATCAAAGAGCTggatgacatcagtcaggaaatcgCCCAGCTGCAGAGagAGAAGTATACTCTGGAGCAGGACATCAGGGACAAAGAGGAAGCCATCAGACAGAAGAACAAGGAAATTCAGGAGATGCTGGAGGACCTGGACCAGGAGAGCGGTGGTCTGCAGGACCTGGAGGCCCAGAAGCAGGATGCTCAGCAGCAGCTGGAGGAGATGGACCAGCAGAGGAACAAGCTGGAGGGCATGCTGAAAGACGTCCACCTGAAGTGTCAGGATCAGTCCACGCTGATCTCATCCTTACAGACCCAGATCCACAGTCAGGAGTCTGACCTGCAGAGTCAGGAGAATGAGCTGAGTCGTACCAAGTCTGACCTGAACAAACTGCAGTTGGAGGAGACGCAGCTAGAGCAGAACCTACTGACCGGACGCATGCAGCTAGACTCCATCATCAAGTCACTCAAGGCCACCCAGGACGAGATCAACCAGGCTCGTAGTAAGCTTTCTCAGATCCAGGACAGTCAACAGGAGGTGACTAAGACTATAGAGCAATACAACAACGCTCTGAACGGAACCCACAGCCAGACTCATGCTGGCAGCATGACCAACCTGGCAGACATGAGCGAAGTAGGATTCTCAGTGAGGGAGAACGGAGAATTTGGCGCCAGGAATCAGGAGGACTCTTTCAAATCGAGGATAGCCATGTTCAGCAGCAACAAATCAACACCAGAACCCCTTCCAGCAGCAGACCCCTTCCAGACAGAGGACCCCTTCAAATCAGACCCCTTCAAAGATCCATTTGAAGCCGATGATCCTTTCAAAGAGAGTGATCCATTCAAGGGTGCTTCCTCAGACTTCTTCAAGAAAACGACCGATGTGTTTGCCTCAGCAGATCCCTTCAGTAGAAAACCTACTCCCCCCATCAAGcctgGTGGCAGTCTGTCGGGTAGCAGGAATCTCTTAACCTCCCACAGCCCccggcccagccccagccccaagcCTACAGaTGGCTTCGGAACAGTGGACCCTTTCGGTGGCAATGCTTTTGGAGGAAAGAGTGGATTCGCAGACTTCAGTCAAATGTCTAAAAAGAAACCAATCAACCCTGTGCTACCACCTAAGAACACACCTAACAGGCCTGCGCCTCCTtatgTCAGGAAGTGAGTCAGAGCAGCTGGCGTGGGTGAAGAGGGAGACTCCACCCACAGGAacaggagagactgaggagactCCGCCCACAGGAACAGAAGGACCCGGACCTGTCCATCGCCCTCAGCAAGGATAAAAACTAAAAAC
>XM_036986548.1
TATTCGGTGTTACTGAAAATAACAAGTTTTCCCTCCCCTTGCATTCATGCTCCTCCACACCACTGATGTCAACAATGTCGAGCTGTCAGTGGTGAGGCGCGTCGTAGCTTCAAGGGTGTGCGCGCTCTCGACACAGCAGGAAATATGGCGGCGCTCATGACTCTCACCCAGTTATCGAGTGGAAACCCAGTTTACGAAGTCTACTACAGACAGGTGGATCTGGGAGACACTGGGACAGTAGGAGCTGCAGATGCTGCTCAGTTCCTGAAGAAATCAGGCCTTTCAGACAGTACCTTAGGAAAAATCTGGGATTTGGCCGATCCAGATAGGAAGGGCTTCTTGGACAAACGGGGTTTCTTTATAGCGTTGAGGTTGGTGGCCTCAGCTCAGGGCGGCAACGACATCAGTCTCAACAACCTCAATCAGACTCTAGCAGCACCCAAGTTTAGAGACACAAATACTCCGTTGCTCAGCACATCGCTGAGTACACCTTCATCTGATTCCCACTGGGCTGTAAGGTCTGATGAAAAAAGGAAGTTTGATGGCATCTTTGAAAGTCTTCTACCAGTCAACGGTCTTTTGTCTGGAGACCAAGTCAAACCTGTCCTGATCAACTCCAAACTACCCATGGATGTGTTAGGAAGGATTTGGGACCTCGGTGACGTGGATAAAGATGGACACTTGGACAGAGAGGAGTTTTCAGTGGCCATGCACCTGGTGTACAGGGCTATGGAGAAGGAGCCTGTCCCTTCCGTcctaccctcctccctcatccctccatccaagAGGAAGAAGTCTGCGGGGGCTCTGCCTGGCGCCGTCTCCGTCCTGCCTCCCTTGTCTGCCCTCTCAGGCCTGTCTGGTCTGTCTCGGACAGCCAGCTCTCCTCCCCTGCCCGGCGCTGTAGCGGCTCTGCCTGGCTTGTCTGGTCTGTCTCGGACAGCAAACTCTCCTCCTCTCAAAGACACCCTAAACTCCACTCCATCTCACAGAAGCATCACCTCCATCAACAGCGCTGGCAGTCTCTCTCCTAAACCTTCGTTCAAAGCCCCCTCACAGTCACCTGCAGTAGTGAACTGGGTGGTCCCGGTGGCAGACAGAGGACGTTATAATGACATCTTCCTGAAGACGGACACAGACATGGACGGTCTTGTCACCGGAGGGGAAGTCATGGAGATCTTCATGCTGTCCAACCTTTCTAAGACCATGCTGGCACAGATCTGGGGTCTGGCTGACACCAAGCAGACAGGAAAGCTGTCCAGAGAGCAGTTCTCTTTGGCCATGTGGCTGATCCACCAGAAAGTCATCAACGGATTGGACCCTCCCCAGACCCTCACAACTGAAATGATACCCCCCTCTGAGAGGTCCACCACCTCTGTTCTTgacagcagcagttCTACAGAGTCAGCTGACCTGACAGGCATCAAAGAGCTggatgacatcagtcaggaaatcgCCCAGCTGCAGAGagAGAAGTATACTCTGGAGCAGGACATCAGGGACAAAGAGGAAGCCATCAGACAGAAGAACAAGGAAATTCAGGAGATGCTGGAGGACCTGGACCAGGAGAGCGGTGGTCTGCAGGACCTGGAGGCCCAGAAGCAGGATGCTCAGCAGCAGCTGGAGGAGATGGACCAGCAGAGGAACAAGCTGGAGGGCATGCTGAAAGACGTCCACCTGAAGTGTCAGGATCAGTCCACGCTGATCTCATCCTTACAGACCCAGATCCACAGTCAGGAGTCTGACCTGCAGAGTCAGGAGAATGAGCTGAGTCGTACCAAGTCTGACCTGAACAAACTGCAGTTGGAGGAGACGCAGCTAGAGCAGAACCTACTGACCGGACGCATGCAGCTAGACTCCATCATCAAGTCACTCAAGGCCACCCAGGACGAGATCAACCAGGCTCGTAGTAAGCTTTCTCAGATCCAGGACAGTCAACAGGAGGTGACTAAGACTATAGAGCAATACAACAACGCTCTGAACGGAACCCACAGCCAGACTCATGCTGGCAGCATGACCAACCTGGCAGACATGAGCGAAGTAGGATTCTCAGTGAGGGAGAACGGAGAATTTGGCGCCAGGAATCAGGAGGACTCTTTCAAATCGAGGATAGCCATGTTCAGCAGCAACAAATCAACACCAGAACCCCTTCCAGCAGCAGACCCCTTCCAGACAGAGGACCCCTTCAAATCAGACCCCTTCAAAGATCCATTTGAAGCCGATGATCCTTTCAAAGAGAGTGATCCATTCAAGGGTGCTTCCTCAGACTTCTTCAAGAAAACGACCGATGTGTTTGCCTCAGCAGATCCCTTCAGTAGAAAACCTACTCCCCCCATCAAGcctgGTGGCAGTCTGTCGGGTAGCAGGAATCTCTTAACCTCCCACAGCCCccggcccagccccagccccaagcCTACAGaTGGCTTCGGAACAGTGGACCCTTTCGGTGGCAATGCTTTTGGAGGAAAGAGTGGATTCGCAGACTTCAGTCAAATGTCTAAAAAGAAACCAATCAACCCTGTGCTACCACCTAAGAACACACCTAACAGGCCTGCGCCTCCTtatgGACTGGAAAGTGTCAAGTCAGGAAGTGAGTCAGAGCAGCTGGCGTGGGTGAAGAGGGAGACTCCACCCACAGGAacaggagagactgaggagactCCGCCCACAGGAACAGAAGGACCCGGACCTGTCCATCGCCCTCAGCAAGGATAAAAACTAAAAACCCTATTAGACTCATGACAATAACCACAGTCCTGTTAGACACTCACAACGACACACACCTCCTGACCACAGTCCTGTTAGACACGACACACACCTCCTGACCACAGTCCTGTtagacacaacgacacacacctCCTGACCACAGTCCTGATACAAGCTGAATAAAACAATGCAACTGACTGATATCATGCAGTACAACACAACAAACAGCTTCACCACGAGCAACAGTTCCTCAACAGCCCAAATACTACCGTCTGACTAGAGCCTGAGGACAGTGTTTCTTCGGACTAGACTACAACGCTTGTACACCCCCAATATAAACCAGAGTACACCctgacaacaactacaacttcaccctgacaacaactacaacttcaccctgacaacaactacaacttcaccctgacaacaactacaacttcaccctgacaacaactacaacttcaccctgacaa
>TU857596
agaTGGCTTCGGAACAGTGGACCCTTTCGGTGGCAATGCTTTTGGAGGAAAGAGTGGATTCGCAGACTTCAGTCAAATGTCTAAAAAGAAACCAATCAACCCTGTGCTACCACCTAAGAACACACCTAACAGGCCTGCGCCTCCTtatgTCAGGAAGTGAGTCAGAGCAGCTGGCGTGGGTGAAGAGGGAGACTCCACCCACAGGAacaggagagactgaggagactCCGCCCACAGGAACAGAAGGACCCGGACCTGTCCATCGCCCTCAGCAAGGATAAAAACTAAAAACCCTATTAGACTCATGACAATAACCACAGTCCTGTTAGACACTCACAACGACACACACCTCCTGACCACAGTCCTGTTAGACACGACACACACCTCCTGACCACAGTCCTGTtagacacaacgacacacacctCCTGACCACAGTCCTGATACAAGCTGAATAAAACAATGCAACTGACTGATATCATGCAGTACAACACAACAAACAGCTTCACCACGAGCAACAGTTCCTCAACAGCCCAAATACTACCGTCTGACTAGAGCCTGAGGACAGTGTTTCTTCGGACTAGACTACAACGCTTGTACACCCCCAATATAAACCAGAGTACACCctgacaacaactacaacttcaccctgacaacaactacaacttcaccctgacaacaactacaacttcaccctgacaacaactacaacttcaccctgacaacaactacaacttcaccctgacaacaactacaacttcaccctgacaacaactacaacttcaccctgacaacaactacaacttcaccctgacaacaactacaacaacttcaccctgacaacaactacaacaacttcaccctgacaacaactacaacaacttcaccctgacaacaactacaacttCACCctgacaacaactacaacaacttcaccctgacaacaactacaacttcaccctgacaacaactacaacttcaccctgacaacaactacaacttcacccagacaacaactacaacttcaccCTGACAACAGCCTCCCGCTGCAGCTCCGTGACGTTCTGACAACAGTCCCTCTAGACTGTGGCCCAATCATCCCCTAACCCCTGTGCCCAAATTTGCCCCTAAACCCTGCGCCCAAATCGGCCCCTAAACCCTACGCCCTATGCTAATCTGAGAGGATTTTACAGGTGTAAGTAATCTGGCAATAGCTCCAGCGTGCTCTCTGATAGGCTAGGTGGAAGTTTCACTATATTGCTTATACCGATCAAATCCTCTCCGATCTCTACAAGTGCATATGGTGTAGGGTTTAAGGGTCGATTTTTGGATTGGGCCTAGGACTTGAGGATGGGATGGCAGCCCCTCTACCGATCCAGCTCCGCTGAAGCCAGACTTTATCAACACTAACCTACCAAAGCCTCTCTTTTAACCTCTTTGTCATCGTCAGCCTCAGTGGTTAATTCCAGTTAGCTGCATCACAACTAAAATCAGCTCAGctcctttttctttttttttaagccttgatTTTAGTCCGACTTGACTGACTGACAGCCTAAATCAAGAGTGACTTAACTCTGACTTGGCTAAGGTCAGGGGTCGTTCTGACTCTAGTAGAGCCCGTAGTTCTTCTATGGGGAGACTCTGGGTGCTTAACtttgtttttgcttcatcatttgTTGTGAGGAAATAGCCAAgattttaacatttttatttaattttgtattatttataTAGGGGAAAAATCATGCACTTGTGGTTTATGAAGTATCTGTATATGTACTATTATAACTGTTTAATATACCCTTATAACATTCATGCTAAAAGTCTGTTATAGCGTACTGTTTTTCTGTCAGTAAGTGTGCTTGTGTTCATGATTTCTTGTTGAAAATCTCCTTTTTCGTAAGGAAATGTTTAGATTATGGAAATACAGATATTCTTTGTTATTTTCTTGTCTCGGGGGTTCTGTACTTTTATTGCCTTCCACCCCAACAGAAGAATGACAAATTCAAAAACTCTCCTGCCTTAAAGGATATGGGGGGCTGTTGACCTTTCACCTCTGTCAACATTGTCAACTGTCAACATTTAGATTGTATTTTTGTTGTAATCTCTTAATGCTAAACTCTATAATGCATTCAGTGGGTTTATTTTGACATGTTTCATCTGTTATTGATTTATTCAACTAGGGCATTAGAATTACTACGTTTCTTTTTATATTTCATTCATTTTCAGGAGAAAATGTATTGTTACACTCTCAAGCACCACACTCAATAATCACTCAGTTTGATCCTGGC

Function

NR:

description
epidermal growth factor receptor substrate 15-like 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986549.1 False 2711 mRNA 0.53 22 83405359 83471799
XM_036986548.1 False 3179 mRNA 0.52 23 83405361 83472252
TU857596 True 2291 lncRNA 0.43 4 83453044 83473827

Neighbor

gene id symbol gene type direction distance location
calr3b LOC106569608 coding upstream 5767 83390694 ~ 83399592 (+)
LOC110530794 LOC106569618 coding upstream 26527 83361388 ~ 83380929 (+)
cplx4c LOC106569619 coding upstream 77309 83316744 ~ 83328050 (+)
LOC110530792 NA coding upstream 123834 83231275 ~ 83281525 (+)
LOC110530786 LOC106569613 coding upstream 201165 83175734 ~ 83204194 (+)
LOC110530806 tpm4 coding downstream 240062 83712314 ~ 83727620 (+)
LOC110530807 rab8a coding downstream 255817 83728069 ~ 83734239 (+)
LOC110531027 NA coding downstream 305442 83777694 ~ 83781404 (+)
LOC110529145 LOC106569623 coding downstream 313724 83785960 ~ 83788580 (+)
LOC110530810 LOC106569622 coding downstream 342415 83814667 ~ 83842323 (+)
G755030 NA non-coding upstream 20246 83384913 ~ 83385113 (+)
G755029 NA non-coding upstream 20711 83384279 ~ 83384648 (+)
G755028 NA non-coding upstream 22327 83382817 ~ 83383032 (+)
G755027 NA non-coding upstream 23043 83381316 ~ 83382316 (+)
G755087 NA non-coding downstream 44174 83516426 ~ 83517179 (+)
G755222 NA non-coding downstream 80707 83552959 ~ 83553177 (+)
G755223 NA non-coding downstream 81661 83553913 ~ 83554236 (+)
G755225 NA non-coding downstream 85102 83557354 ~ 83557553 (+)
G755249 NA non-coding downstream 104279 83576531 ~ 83576748 (+)
G754927 NA other upstream 147493 83255739 ~ 83257866 (+)
G753337 NA other upstream 1479200 81922162 ~ 81931491 (+)
sdhc LOC106569582 other upstream 1603074 81783282 ~ 81802285 (+)
G753205 LOC106569572 other upstream 1917749 81486820 ~ 81487610 (+)
G752398 NA other upstream 2663414 80741604 ~ 80741945 (+)
G755286 NA other downstream 157120 83629372 ~ 83629738 (+)
G755277 NA other downstream 180793 83653045 ~ 83654438 (+)
G755298 NA other downstream 185845 83658097 ~ 83660046 (+)
G755363 NA other downstream 414562 83886814 ~ 83889637 (+)
LOC118965639 NA coding upstream 249024 83199339 ~ 83204020 (+)
G755062 NA non-coding upstream 1268 83449311 ~ 83451776 (+)
G755045 NA non-coding upstream 30793 83421625 ~ 83422251 (+)

Expression


Co-expression Network