XLOC_025909 (znf1124)



Basic Information


Item Value
gene id XLOC_025909
gene name znf1124
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 62317990 ~ 62324799 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00050777
ACCCCGCCTACTCACGGCGCTCAGTGTGAGGCGGAGAGTGCAGAGCTTTGCTGTTTGCTGTTGAATTGCTTTAACTCCACTTCTGTTTCGGGTGTTGTGCGTCTATTCAAAtgaAGCTCCTCCTCCTGCAGtgaagctcctcctcctccagttCAGCTGTAAACACTGTGATATTCCCATCAGGCTCCAGtgaagagtttattgaaggacagcgagaacatgagtgatccagaaccctgcagaattaaacatgaAGACACTGAACAACAAATAGacccaATTGAAGAGTATGAGGAgattaaagaggaggaacatcatgtcaaaattgaggaaaatcatttacagactgatgatattttcaaaaggagagacaagaatagttttacctgcactcagtgtggaaagagttttgaaaGTAAAAGCAGCCtcaagattcacatgaggatccacactggagagaaaccattcacatgcactgagTGTGGAATGAGTTTCAGCCACACATCAAACCTTAATcagcacatgaggatccacactggagagaaaccatacatgtgcactcagtgtgggaagagtttcagccaatcatcagatgttaataaacacatgaggatccacactggagagaaaccgttcacatgcactcagtgtgggaagagtttcagccacgcATCAACCCTTAAccaacacatgaagatccacactggagagaaaccatacatgTGCACACAGTGTGGCAAAGGTTTTAACCAATCATCAGACGTTATTAAACACATGAGGAGCCATACTGgcgagaaaccattcacatgcactcagtgtgggaagagtttcagccaatcatcaaaccttaataaacacatgtgGAGCCACACTGGGGAGagaccatacacatgcactcagtgtgggaagagtttcagccagtcATCAGACGTTACTAAACACATGtggagccacactggagagaaaccattcacttgtactcagtgtgggaagagtttcagccactcatcaaatctcaataaacacacgatgatccacactggagagaaaccattcacatgcactcagtgtgggaagagtttcaggcgatcatcacaccttaataaacacatgaagatccacataTACGTGCTTTGAGTGTGAAAAGGCTTTCATTACAGCTGAAGAGTTGAAACTGCATCAGAGGATTCACAtgggagagaaaccttacaagtgttaaCAATGCAAAAAGAAATTAAGAGATTTGAAAACTGAgatctgaaaacacatgagaggattcacaatGTGGACAAACCATAGACATGATCAGTGTCAATTAGAGATGCTCATATTGACCGTATATCTGGCGGATACATCTGTACAGCTCTGCTGCTCCACTCTCCAGTGTGTTCATGTGGctagtgttgttgttttagatGATGTTCTCTGTttgactccctgaatgagaaacaaatcactgggTAGACACCGCACATCAATAAAGGTGGAGCTCCAGGACAGTTAGTTTGCAGTATACCAGGGCCTCAAGTTTAGAAAGCCTATTCATCCATCCTGTGTTGCTTCTTTTATTAATCAGGTTTCTTTACTTTCAGGTTGAAGATTATTTCTACTTTACTACATTTGCTTTTTGtgagtagaatacaaacttgatgaatattttgtgatttaggcagagcgacaggtattaagttttacaatattaatacactgtGATGATCCCAAGACTCCAGATTGGAGCATGTGGTAgatcctgattggatgcctgcattactcatcaaaGGGTATATAAGAGTTGTTGTGCTACCCCAGGACActgtggctactcaggagtcctcatgtcaagacctgccatctcactGACTCTTTAACctcatggttttgttttgcattacttgtatcatgtagttaaagtgttgttgtgattataccctaagttctttatcttcattatccCTAGACATCTGTTGgttgttttgtttgattgttctatgatttatatttcataataaataatttgcattcaggct

Function


symbol description
znf1124 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-071004-105 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II.

Ensembl:

ensembl_id ENSDARG00000069796

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00050777 True 2027 mRNA 0.42 3 62317990 62324799

Neighbor


gene id symbol gene type direction distance location
XLOC_025908 NA coding upstream 11441 62304042 ~ 62306549 (+)
XLOC_025907 zgc:173575 coding upstream 20616 62290024 ~ 62297374 (+)
XLOC_025906 zgc:174624 coding upstream 41813 62271320 ~ 62276177 (+)
XLOC_025904 NA coding upstream 67416 62207834 ~ 62250574 (+)
XLOC_025905 BX470259.3 coding upstream 91400 62219158 ~ 62226590 (+)
XLOC_025910 zgc:173575 coding downstream 2533 62327332 ~ 62329712 (+)
XLOC_025911 BX470259.1 coding downstream 14465 62339264 ~ 62346128 (+)
XLOC_025912 iqck coding downstream 28851 62353650 ~ 62360828 (+)
XLOC_025913 NA coding downstream 43925 62368724 ~ 62384693 (+)
XLOC_025914 NA coding downstream 99536 62424335 ~ 62542931 (+)
XLOC_025429 BX649540.1 misc upstream 32068954 30248739 ~ 30249036 (+)
XLOC_025898 NA non-coding upstream 256152 62054694 ~ 62061838 (+)
XLOC_025890 NA non-coding upstream 933798 61357205 ~ 61384192 (+)
XLOC_025891 NA non-coding upstream 940935 61368489 ~ 61377055 (+)

Expression



Co-expression Network