LOC110530806 (tpm4)


Basic Information

Item Value
gene id LOC110530806
gene name tpm4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 83712314 ~ 83727620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614078.2
AAAACCAGTCAGGTTTAAATCACTTATATCAGCCCTGGTTTCCAGTCTgcatcctctgctctctcctctctctctctctctctctcgctctctgtatcaGCTGGCGTATTGGCTCTGGTGGACTTGGAAACTTAGAAaggactagtctctctctctctctctgtgagaggGTTTGTCTTTGAGTGTCTAACTAGACCTCCCTGTCCCAAACTTGAAAAGTTTCCCCAGTTTCTGTAGCCACTGACCCCTAACAACCGTCAACCATGGAGGCCATCAAGAAGAAAATGCAGATGCTGAAGCTGGACAAAGAGAACGCCATCGACCGGGCGGAGCAGGCAGAGACCGACAAGAAATCAGCTGAGGACAAATGCAAACAGTTGGAAGATGAGCTGCTGGGGCTGCATAAGAAGCTGAAGGGGACAGAAGATGAGTTGGATAAATACTCTGAGGCTCTGAAGGACGCACAGGAGAAACTGGAGCTGTCAGAGAAGAAGGCTACTGacgcGGAGGGCGACGTGGCGGCTCTGAACCGTAGGATTCAGCTGGTGGAGGAGGAGTTGGACAGGGCTCAGGAGAGGCTGGCCACTGCCCTGCAGAAACTAGAGGAGGCTGAGAAGGCTGCCGACGAGAGTGAGAGAGGCATGAAGGTGATAGAGAACCGAGCCTCCAAGGATgaggagaagatggagatccAGGAGATGCAGCTGAAGGAGGCCAAGCACATCGCTGAGGAGGCCGACAGGAAGTACGAGGAGGTTGCTCGTAAGCTGGTCATCCTCGAAGGGGAACTGGAGAGGGCCGAAGAGCGAGCAGAGATCTCTGAGCTTAAATGTGGTGACCTGGAGGAAGAGCTGAAGAATGTAACCAACAACCTCAAGTCCCTAGAGGCTCAGTCTGTTAAGTATTCAGAAAAAGAAGACAAGTATGAGGACGAAATCAAAGTGCTGACTGACAAACTGAAAGAGGCTGAGACTCGTGCTGAGTTTGCAGAGAGATCGGTGGCTAAACTGGAAAAGACGATTGATGACTTAGAAGATGAACTGTACTCTCAGAAGCTGAAATACAAGGCCATCAGTGAGGAGCTGGACCATGCCCTCACCGACATGACCGCCATATAGATTACCTTTAACCTTTCACACTTCACTTATAGAAATGTGTCCCATTTCACCAATCGAAATGGGACGCTTTCACCTTTTCTCgtcttctcttctcccttcctttATTTTCTTCTCTCTTCGCCTCTCTTATCTTCTCTTCTATTGCATTCTCTTATTTTATCTTCTCTTCGTGCCTTTTCTGTCTTGTTGTGAGACCTTTTCTGTAAAATCAACGTTTCAATAAAATTTGACCTGTTCTATGCA
>XM_021614079.2
AAAACCAGTCAGGTTTAAATCACTTATATCAGCCCTGGTTTCCAGTCTgcatcctctgctctctcctctctctctctctctctctcgctctctgtatcaGCTGGCGTATTGGCTCTGGTGGACTTGGAAACTTAGAAaggactagtctctctctctctctctgtgagaggGTTTGTCTTTGAGTGTCTAACTAGACCTCCCTGTCCCAAACTTGAAAAGTTTCCCCAGTTTCTGTAGCCACTGACCCCTAACAACCGTCAACCATGGAGGCCATCAAGAAGAAAATGCAGATGCTGAAGCTGGACAAAGAGAACGCCATCGACCGGGCGGAGCAGGCAGAGACCGACAAGAAATCAGCTGAGGACAAATGCAAACAGTTGGAAGATGAGCTGCTGGGGCTGCATAAGAAGCTGAAGGGGACAGAAGATGAGTTGGATAAATACTCTGAGGCTCTGAAGGACGCACAGGAGAAACTGGAGCTGTCAGAGAAGAAGGCTACTGacgcGGAGGGCGACGTGGCGGCTCTGAACCGTAGGATTCAGCTGGTGGAGGAGGAGTTGGACAGGGCTCAGGAGAGGCTGGCCACTGCCCTGCAGAAACTAGAGGAGGCTGAGAAGGCTGCCGACGAGAGTGAGAGAGGCATGAAGGTGATAGAGAACCGAGCCTCCAAGGATgaggagaagatggagatccAGGAGATGCAGCTGAAGGAGGCCAAGCACATCGCTGAGGAGGCCGACAGGAAGTACGAGGAGGTTGCTCGTAAGCTGGTCATCCTCGAAGGGGAACTGGAGAGGGCCGAAGAGCGAGCAGAGATCTCTGAGCTTAAATGTGGTGACCTGGAGGAAGAGCTGAAGAATGTAACCAACAACCTCAAGTCCCTAGAGGCTCAGTCTGTTAAGTATTCAGAAAAAGAAGACAAGTATGAGGACGAAATCAAAGTGCTGACTGACAAACTGAAAGAGGCTGAGACTCGTGCTGAGTTTGCAGAGAGATCGGTGGCTAAACTGGAAAAGACGATTGATGACTTAGAAGAACATTTATCCAGTGCAAAAGAAGAGAACTTGGATATGCATCAAGTCCTGGACCAAACACTGATAGAGCTGAATAGTTTGTAAAGAAATGAAACATAATTAGAAGCCGAAGAAGAAGCATCAAcattccatgttttttttttttttttctaacgCCACAATTCTAATGGCATGTCCAGTTTTAACGTCTCAACCATGAAAAGACGTTGTACTTTCCGACCACTATTTGTAATTCTTGTTTTTCCATTCTCTATTTTAGTATACTACCGGTAGCTTTTATGTTTCGACGTCCTTTCCTACTGTCATGAGTACAGTTTATAAGTACAATGAGCATATACTGACAGCTGTAGCTGGATACCAAAACACTTATCAAAGATTCCTCTCTGACTCTATATAGGAATGCTTGTATCAGTTGTATAGCTACCATGGACCAGTTTTTTTCACAGACATATtctgcaaaaaaaacaaacattttgagGGTTGAAATGTCTGTGGTTAGCTATAATAATAAAAATCTATAATACAA
>XM_036986552.1
GAGACTGCTCAGGATTGGAGGATTTCAGCCATAACTTTCCTCAAACCTCCAGCCCTTTCCCGGTCCTCTACTTCTTAAACGTATTTTAAATTTGAtatccaatttacagtaggctAGATCGATCATTTAGTTCGATAATGACAGGTGGATCATTGGACGCGGTGAAAAGGAAAATCCAGGCGCTTCAACAGCAAGCGGACGACGCAGAAGATCACACGATACTTTTACAGAAACAGTTGGACGATGAACGGGAATTGCGCGAAAACgcGGAGGGCGACGTGGCGGCTCTGAACCGTAGGATTCAGCTGGTGGAGGAGGAGTTGGACAGGGCTCAGGAGAGGCTGGCCACTGCCCTGCAGAAACTAGAGGAGGCTGAGAAGGCTGCCGACGAGAGTGAGAGAGGCATGAAGGTGATAGAGAACCGAGCCTCCAAGGATgaggagaagatggagatccAGGAGATGCAGCTGAAGGAGGCCAAGCACATCGCTGAGGAGGCCGACAGGAAGTACGAGGAGGTTGCTCGTAAGCTGGTCATCCTCGAAGGGGAACTGGAGAGGGCCGAAGAGCGAGCAGAGATCTCTGAGCTTAAATGTGGTGACCTGGAGGAAGAGCTGAAGAATGTAACCAACAACCTCAAGTCCCTAGAGGCTCAGTCTGTTAAGTATTCAGAAAAAGAAGACAAGTATGAGGACGAAATCAAAGTGCTGACTGACAAACTGAAAGAGGCTGAGACTCGTGCTGAGTTTGCAGAGAGATCGGTGGCTAAACTGGAAAAGACGATTGATGACTTAGAAGATGAACTGTACTCTCAGAAGCTGAAATACAAGGCCATCAGTGAGGAGCTGGACCATGCCCTCACCGACATGACCGCCATATAGATTACCTTTAACCTTTCACACTTCACTTATAGAAATGTGTCCCATTTCACCAATCGAAATGGGACGCTTTCACCTTTTCTCgtcttctcttctcccttcctttATTTTCTTCTCTCTTCGCCTCTCTTATCTTCTCTTCTATTGCATTCTCTTATTTTATCTTCTCTTCGTGCCTTTTCTGTCTTGTTGTGAGACCTTTTCTGTAAAATCAACGTTTCAATAAAATTTGACCTGTTCTATGCA
>XM_036986551.1
GAGACTGCTCAGGATTGGAGGATTTCAGCCATAACTTTCCTCAAACCTCCAGCCCTTTCCCGGTCCTCTACTTCTTAAACGTATTTTAAATTTGAtatccaatttacagtaggctAGATCGATCATTTAGTTCGATAATGACAGGTGGATCATTGGACGCGGTGAAAAGGAAAATCCAGGCGCTTCAACAGCAAGCGGACGACGCAGAAGATCACACGATACTTTTACAGAAACAGTTGGACGATGAACGGGAATTGCGCGAAAACgcGGAGGGCGACGTGGCGGCTCTGAACCGTAGGATTCAGCTGGTGGAGGAGGAGTTGGACAGGGCTCAGGAGAGGCTGGCCACTGCCCTGCAGAAACTAGAGGAGGCTGAGAAGGCTGCCGACGAGAGTGAGAGAGGCATGAAGGTGATAGAGAACCGAGCCTCCAAGGATgaggagaagatggagatccAGGAGATGCAGCTGAAGGAGGCCAAGCACATCGCTGAGGAGGCCGACAGGAAGTACGAGGAGGTTGCTCGTAAGCTGGTCATCCTCGAAGGGGAACTGGAGAGGGCCGAAGAGCGAGCAGAGATCTCTGAGCTTAAATGTGGTGACCTGGAGGAAGAGCTGAAGAATGTAACCAACAACCTCAAGTCCCTAGAGGCTCAGTCTGTTAAGTATTCAGAAAAAGAAGACAAGTATGAGGACGAAATCAAAGTGCTGACTGACAAACTGAAAGAGGCTGAGACTCGTGCTGAGTTTGCAGAGAGATCGGTGGCTAAACTGGAAAAGACGATTGATGACTTAGAAGAACATTTATCCAGTGCAAAAGAAGAGAACTTGGATATGCATCAAGTCCTGGACCAAACACTGATAGAGCTGAATAGTTTGTAAAGAAATGAAACATAATTAGAAGCCGAAGAAGAAGCATCAAcattccatgttttttttttttttttctaacgCCACAATTCTAATGGCATGTCCAGTTTTAACGTCTCAACCATGAAAAGACGTTGTACTTTCCGACCACTATTTGTAATTCTTGTTTTTCCATTCTCTATTTTAGTATACTACCGGTAGCTTTTATGTTTCGACGTCCTTTCCTACTGTCATGAGTACAGTTTATAAGTACAATGAGCATATACTGACAGCTGTAGCTGGATACCAAAACACTTATCAAAGATTCCTCTCTGACTCTATATAGGAATGCTTGTATCAGTTGTATAGCTACCATGGACCAGTTTTTTTCACAGACATATtctgcaaaaaaaacaaacattttgagGGTTGAAATGTCTGTGGTTAGCTATAATAATAAAAATCTATAATACAA

Function

symbol description
tpm4 Predicted to enable actin filament binding activity; protein heterodimerization activity; and protein homodimerization activity. Involved in osteoblast differentiation. Located in stress fiber.

NR:

description
PREDICTED: tropomyosin alpha-4 chain isoform X2

GO:

id name namespace
GO:0055003 cardiac myofibril assembly biological_process
GO:0060048 cardiac muscle contraction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614078.2 False 1361 mRNA 0.49 9 83712314 83726845
XM_021614079.2 False 1560 mRNA 0.46 9 83712314 83727620
XM_036986552.1 False 1124 mRNA 0.47 8 83721596 83726845
XM_036986551.1 True 1323 mRNA 0.44 8 83721596 83727620

Neighbor

gene id symbol gene type direction distance location
LOC110530798 LOC106569607 coding upstream 240062 83405359 ~ 83473827 (+)
calr3b LOC106569608 coding upstream 312722 83390694 ~ 83399592 (+)
LOC110530794 LOC106569618 coding upstream 333482 83361388 ~ 83380929 (+)
cplx4c LOC106569619 coding upstream 384264 83316744 ~ 83328050 (+)
LOC110530792 NA coding upstream 430789 83231275 ~ 83281525 (+)
LOC110530807 rab8a coding downstream 449 83728069 ~ 83734239 (+)
LOC110531027 NA coding downstream 50074 83777694 ~ 83781404 (+)
LOC110529145 LOC106569623 coding downstream 58356 83785960 ~ 83788580 (+)
LOC110530810 LOC106569622 coding downstream 87047 83814667 ~ 83842323 (+)
LOC110530811 LOC106569621 coding downstream 118726 83846346 ~ 83871561 (+)
G755322 NA non-coding upstream 320 83711593 ~ 83711994 (+)
G755318 NA non-coding upstream 6951 83705143 ~ 83705363 (+)
G755314 NA non-coding upstream 13794 83698262 ~ 83698520 (+)
G755310 NA non-coding upstream 36283 83675409 ~ 83676031 (+)
G755298 NA non-coding upstream 52268 83658097 ~ 83660046 (+)
G755372 NA non-coding downstream 67374 83794994 ~ 83797174 (+)
G755368 NA non-coding downstream 115437 83843057 ~ 83843553 (+)
G755398 NA non-coding downstream 128676 83856296 ~ 83856644 (+)
G755399 NA non-coding downstream 129388 83857008 ~ 83857580 (+)
G755366 NA non-coding downstream 158419 83886039 ~ 83886665 (+)
G755277 NA other upstream 57876 83653045 ~ 83654438 (+)
G755286 NA other upstream 82576 83629372 ~ 83629738 (+)
G754927 NA other upstream 454448 83255739 ~ 83257866 (+)
G753337 NA other upstream 1786155 81922162 ~ 81931491 (+)
G755363 NA other downstream 159194 83886814 ~ 83889637 (+)
LOC110530814 LOC106569707 other downstream 176015 83895686 ~ 83905612 (+)
G755428 NA other downstream 241758 83969378 ~ 83970697 (+)
G755585 NA other downstream 534367 84261987 ~ 84262966 (+)

Expression


Co-expression Network