LOC110530807 (rab8a)


Basic Information

Item Value
gene id LOC110530807
gene name rab8a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 83728069 ~ 83734239 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614080.2
TAACGACGCGGCAGCGCGTAGCTTTTCGCCGGGCGGGATTTCCGCAATATCAAGTATGGCGAAGACGTACGATTATTTGTTTAAGTTACTGCTAATCGGAGACTCCGGTGTCGGGAAGACCTGCGTGCTGTTCAGGTTTTCAGAGGATGCTTTTAACTCGACATTCATCTCCACCATAGGCATTGACTTTAAGATTAGAACGATAGAGCTAGACAACAAGAAGATAAAGTTGCAGATATGGGACACAGCAGGGCAGGAGCGATTTCGAACAATCACAACAGCGTACTACAGAGGCGCGATGGGTATCATGCTAGTCTATGACATCACCAACGAGAAGTCCTTCGAAAACATAAAGAACTGGATACGGAATATAGAGGAGCATGCATCGGCTGATGTTGAAAAGATGGTTCTCGGTAACAAATGTGACATCAATGACAAACGGCAGGTGTCCAAAGACCGGGGAGAGAAGCTGGCGCTGGAGTACGGTATTAAGTTCATGGAGACTAGTGCAAAGGCCAACATCAACGTGGAAAACTCGTTTTTGACACTTGCCAGAGACATCAAATCAAAGATGGACACAAAATTGGAGGGCAGCAGTCCTCAGGGGAGCAGCCACAAGGTGAAGATCTCTCAGCCCCAGAAGAAGAGCAGCTTCTTCCGCTGTGCCCTACTGTGAGGACCAGACCATGGGTGTATACCAAATGGCCcactattccatatatagtgtgctatgtttgaccagggcccatagaactctagtcaaaagtagtgcactatgtagggaatagggtgccatttgggatgcataccaAAGGCCTTACCTACCCTCCGCCTGCCCTGGCTGGGATATGCTGGGGTGCTGGCTGGACACAACTGGACTGTGCTTGCTCCCAgcaccccccctctccttctacccTATTCCCTTCAGCCAGTCCCAATTCACTCCCCGCCTCTTCCCCTCGGCCCTAACCCTTAGATGTCTGTGTATCTGAAGTGTTTGAATAGATACATGCAGTTGTTTACACCTTgcgtatacagtgagctccagaagtattgggacagtgacacatgtttGGTTGTTTTGGcgctgtactccagcactttggatatttgtgcatctgtcaTTTCTTTTCCACTCGTCATTATTCACGATGATCCGTAACCATGGTAACATCCACATTTTAATGTAGATGTGTACAAGAAACATTCTATTATTGTTTACAATATAAAGTGACTGAAAAATAGCACAATAACAAAcggcaaatgcatccaacaaatttgtagaATCACAAGCTTGacgtagtcattgtgtgctatgaatatgtGACGAAATACTTCACTTTTAATTCCGTTAATACctatataagtgaatttgtcccaatactttagTTCCTCTAACATGGGGTGGGACTaggtacaaaaagtgctgtaatttctaaacggttcacccgacattgaaaataccctcaaattaaagctgacagtctgcactggAGTACCGAACCTAAACAaccaaaaatgtgtcactgtcccaatacttttggagctcgcTGTTCGTGAACATCGAAGACTTGGGGCCAATGGTAATTGGTAAGGAGATAATTAGGACAAGTtgcctctcttgctctctctctctctccctcactgtccacCTCTCCCAACGTCATGCCCTGGGGTAGCTGGAGTACGGTAACCGCGACTCCATCCACAATGGCCCCGTGACACCTGGTAATGCTGCTGTCCTTCCTACGGCACACCAACCTGTTTTCTATCACCACGGGTCGGACTGACAGACCAACCGGTGGAAACaccacttgttttttttttaaagaaggttCAAATgacatgtcacacagaaaagatGGGCTCTTCTTCCTGTTTCACACTAGTCTCTATGTACATACATTTTTCACAcgcagccacctggctccacacCTGCCAAAGTTGGAGCCCCGTTTACTTTTCAGTTCGAATCGCTTGAATGACCCAAAGGTTTGGGATTGGGAACGTGATGCGTGGATGTTTAGATACTATTTGTAGGCCTCTCTTCCCCATTCGCCACATTGTTAACATGAGCCAGAGACTGATAAGCTTACTGTTTTGATGAAACAAGAGTTTTTAAAGGAATATAATATGACTTGAAGATTCACAATCCTTCAGGAAAGAGTGATCGCTAAATAATTTAATTACACAGACTAAAAGAAAATTCAATTTGAACGATAATTCCGTTTTGTTTACATTCCAAGATAATTTGATGCTATTCTATACATGAAAGGCTTGCAACAGGCCTCTCTTCCTGAACAAAGTTATTGTActgaatccaagtgtttgactTGTTTACTGCCAGTCCCAGATGTTGTCTTGAGAACAAACACACAGCCTCTTAACCATAGTGCTGCAGCACCACCTGAAAAATTTgaatttaaaaatacatttagactttttttttatatacatacagtaccagtaaaaaatTTAGACACCtttctttctacattgtagaataatagt

Function

symbol description
rab8a Predicted to enable GTP binding activity and GTPase activity. Involved in melanosome transport. Acts upstream of or within photoreceptor cell outer segment organization. Predicted to be active in cytoplasmic vesicle; dendritic spine; and plasma membrane. Orthologous to human RAB8A (RAB8A, member RAS oncogene family).

NR:

description
ras-related protein Rab-8A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07901 RAB8A, MEL; Ras-related protein Rab-8A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614080.2 True 2511 mRNA 0.44 7 83728069 83734239

Neighbor

gene id symbol gene type direction distance location
LOC110530806 tpm4 coding upstream 449 83712314 ~ 83727620 (+)
LOC110530798 LOC106569607 coding upstream 255817 83405359 ~ 83473827 (+)
calr3b LOC106569608 coding upstream 328477 83390694 ~ 83399592 (+)
LOC110530794 LOC106569618 coding upstream 349237 83361388 ~ 83380929 (+)
cplx4c LOC106569619 coding upstream 400019 83316744 ~ 83328050 (+)
LOC110531027 NA coding downstream 43455 83777694 ~ 83781404 (+)
LOC110529145 LOC106569623 coding downstream 51737 83785960 ~ 83788580 (+)
LOC110530810 LOC106569622 coding downstream 80428 83814667 ~ 83842323 (+)
LOC110530811 LOC106569621 coding downstream 112107 83846346 ~ 83871561 (+)
LOC110530812 zbt17 coding downstream 141292 83875531 ~ 83882723 (+)
G755322 NA non-coding upstream 16075 83711593 ~ 83711994 (+)
G755318 NA non-coding upstream 22706 83705143 ~ 83705363 (+)
G755314 NA non-coding upstream 29549 83698262 ~ 83698520 (+)
G755310 NA non-coding upstream 52038 83675409 ~ 83676031 (+)
G755298 NA non-coding upstream 68023 83658097 ~ 83660046 (+)
G755372 NA non-coding downstream 60755 83794994 ~ 83797174 (+)
G755368 NA non-coding downstream 108818 83843057 ~ 83843553 (+)
G755398 NA non-coding downstream 122057 83856296 ~ 83856644 (+)
G755399 NA non-coding downstream 122769 83857008 ~ 83857580 (+)
G755366 NA non-coding downstream 151800 83886039 ~ 83886665 (+)
G755277 NA other upstream 73631 83653045 ~ 83654438 (+)
G755286 NA other upstream 98331 83629372 ~ 83629738 (+)
G754927 NA other upstream 470203 83255739 ~ 83257866 (+)
G753337 NA other upstream 1801910 81922162 ~ 81931491 (+)
G755363 NA other downstream 152575 83886814 ~ 83889637 (+)
LOC110530814 LOC106569707 other downstream 169396 83895686 ~ 83905612 (+)
G755428 NA other downstream 235139 83969378 ~ 83970697 (+)
G755585 NA other downstream 527748 84261987 ~ 84262966 (+)

Expression


Co-expression Network