LOC110529145 (LOC106569623)


Basic Information

Item Value
gene id LOC110529145
gene name LOC106569623
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 83785960 ~ 83788580 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021611279.2
TCCAAGGACCCACAACAAGAAGCATGTACCATTACCTTATCTCTGAGATGTTACCTGTTGCTATGATCACTGCCATTGCCACGTTAGTGAGCATGGCTACTGCAAGATCATCACTAAATTATTTGGAAAGCCACTTTTCCATGGAGAACGAGTCTGAAGAAGTGCGTTCTGCAGCTATCAAGAGGCTGCTGGAGGTGTTTGGGATGGAGGATGCTCCTCTCCTCCGGGGCGACAAGCAGCCGCCTCAGTACATGGTCGACCTGTACAACACTGTCGCAGATGTGGACGGAGTTACCAAGGACCCCTACATTCTGGAGGGGAATACAGTACGCAGCTTCTTCGACAAACTGCACAGTGAACAAATCGAGTTCCTGTTCAACTTGTCCATGGTGGCCAGTAGTGAGAAGGTTCTAACCGCGGAACTCCATCTCTTCAAGCTGCGGCCTCAGGTTTCTGCAACATTCAATAGATATCACTTCTGTCAGGTCAGTGTCTACCAGCTTCTGGATAGCAGCAAAATGAACATTACTCAGGGGAAGAAGCTGCTGTCTTCCAGACTGATCCCTGTCCCCTCCACTGGCTGGGAAGTGTTCACCATTACACAAGCTGTGCGTTCCTGGATGGCTGTTGAGGGCAATAACCTGGGTCTTCTGGTCACAGTGCAGACCCTGGGAGGAAGCCAGATGGATGAGAAGGTGGTGCGTTTTTCTTCAGGCCGTAACCACCATAAAAGCAAGCAGCCCATGCTGGTGCTGTTCACTGACGATGGCCGCCGTGCAGCCGCTCTGGATAATACAGTCAAAGGTAGCCTAACACACAATCAAACCCCAGCTGTCCCTGGCCTGTCCAACCTCCCCAACACCCCAGGCTTCCACCGCAGCGCCCGCTCCCTGGACTATGACGAGGACGTAGAGAAGATGACCTGCCAGCGCCTGCCACTCTACGTGGACTTCGAGGAGATCGGCTGGTCCGGGTGGATCGTGTCACCTCGGGGTTACAATGCCTACCACTGTAAGGGCTCCTGCCCCTTCCCCCTGGGCCAGAACATGAGACCCACTAACCACGCCACCGTCCAGTCTATCATCAACGCTCTGAAGCTGACTAAAGGCATTGAAACGCCGTGCTGCGCGCCAGACAAGCTCTTCTCCATCAACCTGCTGTATTTTGATGATGACGAGAATGTGGTGCTGAAGCAGTATGATGACATGGTGGCAGGAAGCTGCGGCTGCCATTGAgctggacggacggacggacggacggggggAGGTGACTGTGCTAAACCAAGATGGCTGACACGGAGCAGCAGTGTATCTCATTCAGGAGGGCACAACGTTGCAAACCTCACAGATAGAAATGTCTTGTATAGAGCTCACACCCTTCTACATGACAGAGAATTATGTTTGTTAGATGTGATATATTTCTATCTGATTGTTCTGTAATCTTGCGCCCAACTGAATGCGACTGTGCTCTGTGTGGATGGATGACTGCCACAGGGCTGGTGCTGTACAACGCTGACCAAGGCGTATTGTGTCAAAGCAAAGGAGGACAAATATTAAAATCTAATTTCAGTCTAGGTGTTGGTATAAAACCGCCTTTTACACTCAGCgatgaagatgaagatgaagCAGTATGCAGGCAGAGTCCTACGTGTAACATATGTAAATAGGTAGAAATTATAATATATGACAGGGCATGACTTGAT
>TU857995
AACAAGACATAGATGCTCCAAGGACCCACAACAAGAAGCATGTACCATTACCTTATCTCTGAGATGTTACCTGTTGCTATGATCACTGCCATTGCCACGTTAGTGAGCATGGCTACTGCAAGATCATCACTAAATTATTTGGAAAGCCACTTTTCCATGGAGAACGAGTCTGAAGAAGTGCGTTCTGCAGCTATCAAGAGGCTGCTGGAGGTGTTTGGGATGGAGGATGCTCCTCTCCTCCGGGGCGACAAGCAGCCGCCTCAGTACATGGTCGACCTGTACAACACTGTCGCAGATGTGGACGGAGTTACCAAGGACCCCTACATTCTGGAGGGGAATACAGTACGCAGCTTCTTCGACAAACTGCACAGTGAACAAATCGAGTTCCTGTTCAACTTGTCCATGGTGGCCAGTAGTGAGAAGGTTCTAACCGCGGAACTCCATCTCTTCAAGCTGCGGCCTCAGGTTTCTGCAACATTCAATAGATATCACTTCTGTCAGGTCAGTGTCTACCAGCTTCTGGATAGCAGCAAAATGAACATTACTCAGGGGAAGAAGCTGCTGTCTTCCAGACTGATCCCTGTCCCCTCCACTGGCTGGGAAGTGTTCACCATTACACAAGCTGT

Function

NR:

description
bone morphogenetic protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021611279.2 False 1702 mRNA 0.51 5 83785976 83788580
TU857995 True 626 TUCP 0.49 3 83785960 83786941

Neighbor

gene id symbol gene type direction distance location
LOC110531027 NA coding upstream 4572 83777694 ~ 83781404 (+)
LOC110530807 rab8a coding upstream 51737 83728069 ~ 83734239 (+)
LOC110530806 tpm4 coding upstream 58356 83712314 ~ 83727620 (+)
LOC110530798 LOC106569607 coding upstream 313724 83405359 ~ 83473827 (+)
calr3b LOC106569608 coding upstream 386384 83390694 ~ 83399592 (+)
LOC110530810 LOC106569622 coding downstream 26087 83814667 ~ 83842323 (+)
LOC110530811 LOC106569621 coding downstream 57766 83846346 ~ 83871561 (+)
LOC110530812 zbt17 coding downstream 86951 83875531 ~ 83882723 (+)
LOC110530814 LOC106569707 coding downstream 107106 83895686 ~ 83905612 (+)
lrrc42 lrrc42 coding downstream 125403 83913983 ~ 83918907 (+)
G755322 NA non-coding upstream 73982 83711593 ~ 83711994 (+)
G755318 NA non-coding upstream 80613 83705143 ~ 83705363 (+)
G755314 NA non-coding upstream 87456 83698262 ~ 83698520 (+)
G755310 NA non-coding upstream 109945 83675409 ~ 83676031 (+)
G755298 NA non-coding upstream 125930 83658097 ~ 83660046 (+)
G755372 NA non-coding downstream 6414 83794994 ~ 83797174 (+)
G755368 NA non-coding downstream 54477 83843057 ~ 83843553 (+)
G755398 NA non-coding downstream 67716 83856296 ~ 83856644 (+)
G755399 NA non-coding downstream 68428 83857008 ~ 83857580 (+)
G755366 NA non-coding downstream 97459 83886039 ~ 83886665 (+)
G755277 NA other upstream 131538 83653045 ~ 83654438 (+)
G755286 NA other upstream 156238 83629372 ~ 83629738 (+)
G754927 NA other upstream 528110 83255739 ~ 83257866 (+)
G753337 NA other upstream 1859817 81922162 ~ 81931491 (+)
G755363 NA other downstream 98234 83886814 ~ 83889637 (+)
G755428 NA other downstream 180798 83969378 ~ 83970697 (+)
G755585 NA other downstream 473407 84261987 ~ 84262966 (+)
G755602 NA other downstream 514890 84303470 ~ 84308274 (+)

Expression


Co-expression Network