LOC110530811 (LOC106569621)


Basic Information

Item Value
gene id LOC110530811
gene name LOC106569621
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 83846346 ~ 83871561 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986566.1
GCACAGTTCCGTCTCTGAGTATACCAAACGGATGTTTGCGTTCAGATATTTATATCCCTTATAATATCGTTGTGTTGTATCTGTGCAGACCTATGCTGAAACATTATTAATGTGACAGGCCTCACGTCTACAGAGTGAGACTACCCGAAAGGTCGGCTCGTTAACGTTAGTTTACCAAAGAGAGTCGACTAAAACTGACTTGATAGCACGGTGATAATGGTGGGTTGGTGTGCTGTACCGGGTTGTAACACACAGGAAGATGAAGATATTCTTTATCATTGCTTGCCGGCGAATGATGTGCAAAGATGCAGACGATGGTTAGCAGCCATACAAAAGGATGTAAATTTACCAATGGAAAGGCATAAATATTTCTTAGTGTGTGAACACCACTTCAGACCAGAGGAATATGAAAAGGATTTGATGGCAGAGACGATGGGCGCCAAACATAAGAAAAAGCTCAAATCCACCGCGATTCCCACCATATTTCCATGGAATGATTACATTTTGAAGAGAATTCAGCCACACAGAAAACATTTGAATGCGGCCGGAAGTGAAATGTTTCTGAGTGCAGTTGGCAGACTTGGTGCCAAACCAAAATGTGAGCCTGGTACAACAACAACAGGAGCAGCATCCCAGATGTCAACATCGGTGGTCCAACAACCTGCTGTAGTTCCTGTTGCTTTTTCAACACAGACTGTGAAGAGTGCAGTTGGCAGACTTGGTGCCAAACCAAAATGTGAGCCTGGTACAACAACAACAGGAGCAGCATCCCAGATGTCAACATCGGTGGTCCAACAACCTGCTGTAGTTCCTGTTGCTTTTTCAACACAGACTGTGAAGAATGCAGTTGGCAGACTTGGTGCCAAACCAAAATGTGAGCCTGGTACAACAACAACAGGAGCAGCATCCCGGATGTCAACATCAGTGGTCCAACAACCTGCTGTAGTTCCTGTTGCTTTTTCAACACAGACTGTGAAGAGTGCAGTTGGCAGACTTGGTGCCAAACCAAAATGTGAGCCTGGTACAACAACAACAGGAGCAGCATCCCAGATGTCAACATCGGTGGTCCAACAACCTGCTGTAGTTCCTGTTGCTTTTTCAACACAGACTGTGAAGAGTGCAGTTGGCAGACTTGCTAGTTGGCAGACAACAACATCATCAGGATCCCGACGGTATCAAACTTATAAAGAAGCAAAAGTCAGTCTTCGTGTCGGCCTATCGCTACGAACAAGAGTACTTACCGGACCTTGGGAGACAGTTGCAGATAATTTAGCGCGAGGTCGTTTCAAAGCTATCCCTAAAAACCTAATGGCAATCCCTGGCCTGGGCCACGCCATGTTGGAGGAAGTGCTGAAGCTGGTAACTAAAGAATGCGTCACTTTAGTTTCTATGCGTTTCAACTCAGTATTACGTCAGACTAGTCCCCTTTCAATTAAAACCTTCAACTGGACCACTGTGACCGATGAGTGGAGGAACTCGGCTCCGACCTTCTTCCGGTTTCTATCCACTAGTTCAGCTACAGCGGGCTTGAATCCAAACTCAACCAAATCAGCAAAAAGTTCTATGGTGGCCATGGCTGGTGCCTTATTACTCAGGGCTCGTTCAAAGAATATGTGTGCAGCCGTGTACAGGACCTCAATGTTGCTACGGCAACGACGAACCAGGACGAGATGCCAAAACAAGCTTGCAAAAATGGGAGTTTGCGTTTCAAGTCACAGTAGCTTAACGAAGAGGAGAGACATTACACTGTCTTATGATAAAGACTTAGCTGCCTGCCATACCCGAACCGCAGTTGAAGACCAACCAATAAGCCTACTGACCAGCCCAGCCCATTCAATGGTGCCACCTTTGCCACTGGAGGATGGCGATACCGGTTGGTCTGGAGAGAGTGTAGCAGAGACTACTGTTGTGTTGCCGGGCAGTGACGATGAAGATGCCGCTGCGCTGACGGATGAGGAGTTCTGGCAGTTCTCCAGGGAGcaggatgaagatgaggatgatgaggatgaaAAGGAGAACAAGACTGCGTACAGGAAGTCAGTCCAGCAGAAACAGGGAAAACGGCTCTCTGCGAAGAAGTTCTTCAAAGCGCAAAGGAAAAATAAAGCTGTGCAAACACGTCCTCATGGAACCCGCGTCGATGTTTCTCCTGAGAGTGGTGACCTGTGTGTGAACAGAGACTGTCTCCTGCAGCTCTTCCGGTTGTGTAGGAGGTGTGGATTTGAGTGCAAGGTCAGCTTGCAGGGTCAACAGAGGAGCTTCTCTGTCATTCAGATGTGCCCAATATGCAGTCACACCAGGAAGTGGATGAGCCAGCCTTTTGTTGCTGAGGAAACCtctggtgaaagagagacagagctacTGGATGGAGAGGAACCATGTAAGGACAGAGACCAGGATGACAGTTGTTCGTTGACGATGGAAATCACTGAGGAGATGTGTGACTATGATGAAGAAGTCTGTCCTCGGAGGAAAAGGGGAAAGCAGAGATCAGATGAGAGATCAGATGAGAGATCAGATGAGACCGAGTGGGAGCCGTCTGACGAGGAAGACATTGTAATGGACTCTGATTCTTCTGAGGATTTGGAAACGGCAGGTTCCTCTGGTCTAACAGAAAAGGCCAACGTTGATAATTGTCAGAGCGGaatagagaaagaagagagactTGTGGAGTGGTGCACTGACTGTGTAGCCGAGCCTGTACTCGCCTGCACCACACAGCGCCATAAGAAGCTGTacgcctgtggtgtgtgtgtgagtgaggtccAACAAGCTGTTGGATTTGACCGATTCTACATGCAGTTCGAGGACCTGGCCAGCTTCAAGGAACATGTACGACGtgaacacaacacacaacctCATAGGTTTCTCTGTACAGACTGCGCCAAGCGTCACATCAAGAAGGATAATTTGTGTGTGTACAAGATTAAGAAGCTCCGCTGTCGAGATTGTGGTAAACACGGTCTGAGTGAGCAGGGTCTGTGGAGTCACAGACGTCTCCATCAGAAAGGCTGCGTTTACCCATGTAAGTTCTGTCTCAAGCCATTCAGGACCAAACAGGACAAGTTTACCCACGAGGAGAACCATCGGCATCCTTATCATTGCTCAGAATGCTCAGAAAGATTCAAGAACATTAGACTACGGAACAGACACCTTCAGAGCCACAGAGGTCCAACGACAGCCGTCCACAGTGGCCAGAAGCCCCACAAGTGCCAGCTGTGCCGACGCTCGTATGCCCAGCCGAGCCACCTCAAGTCCCACATGCGCCTCCACACAGGGGAGAGGCCTTTCAAGTGCCATCAGTGTGAGAAGTTTTTCAATTACAGCGTCAGTCTGAAGAACCACATCCAACTCTATCATGGCCCCGGCTCTCAGGAGCAGGAGAGCCGGGAGACAAACTGTGGGGCGGcgcaggagaaagaggaggagagagagcacaagCGTCACTTTAAGGAGGATAATTTGTGTGCGTACAAGATCAAGAAGCTCTGCTGTCTAGACTGTGGTAAACGCTGTCTGAGTGAACAGGGTCTGAAGTGTCACAGACATCTCCACCAGAAAGGCTGCGTTTACCCATGTAAGTTCTGCCTCGTGCCATTCAGGACCAAAGAGGACAAGCTTATCCACGAGGAGAACCATCGGCATCCTTATCAGTGCTCAGAATGCTCAGAAAGATTCAAGAACATTAATCTACGGGACAGACACCTTCAGAGCCACAGAGGTCCAAAGAGATATATTTGTGACATCTGCGACAAACGTTTCTTCCAGTTTAAACACCTACAGAAACATACATTCGTCCACAGTAGGCAGAGACCCCACACGTGCCAGCTGTGCCAACGCTCGTTCACTGAAAAGAAACACCTCAGGGCCCACATGCGCTCCAAATGCCAGCAGTGTGAGAAGTGTTTCAATCGCATAGTCCATCTGAAGATCCACATCCAACGGCATCATGGCACCGGCTCTcagaagcagggagagagagtaggagggggAGAGTCAGGAACCAAACTCTAGTactgagcaggagagagagagtaggagggggAGAGTCAAGAACCAAACTCTAGTactgagcaggagagagagagtaggagggggAGAGTCAGGAACCAAACTCTAGTACTGAgcaggagagagagtaggagggggAGAGTCAGGAGAGATTGGAACTCTATAGCATCATTATAATGATGTAAAAAGTCTGTCGttctggccctgaacaaggcagttaacccactgttccaaggccgccattgaaaataagaatttgttcttaactgacttgcctagttaaataaaggtgaaataaaaaaatatataatgggaAAATAAACGATGATGATCAACTCAAAGTTTGCTGGAGTTTGTTaaacactgctccaaaaaaaataaagggaacactaaaataacacatcctagatctgaatgaatgaaatattcttattaaatacttttttctttacatagttgaatgtactgacaacaaaatcacaca

Function

NR:

description
PREDICTED: uncharacterized protein LOC106569621

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986566.1 True 4495 mRNA 0.47 12 83846346 83871561

Neighbor

gene id symbol gene type direction distance location
LOC110530810 LOC106569622 coding upstream 4023 83814667 ~ 83842323 (+)
LOC110529145 LOC106569623 coding upstream 57766 83785960 ~ 83788580 (+)
LOC110531027 NA coding upstream 64942 83777694 ~ 83781404 (+)
LOC110530807 rab8a coding upstream 112107 83728069 ~ 83734239 (+)
LOC110530806 tpm4 coding upstream 118726 83712314 ~ 83727620 (+)
LOC110530812 zbt17 coding downstream 3970 83875531 ~ 83882723 (+)
LOC110530814 LOC106569707 coding downstream 24125 83895686 ~ 83905612 (+)
lrrc42 lrrc42 coding downstream 42422 83913983 ~ 83918907 (+)
tceanc2 tceanc2 coding downstream 79309 83950870 ~ 83952733 (+)
LOC110492646 LOC105022906 coding downstream 564927 84436488 ~ 84931644 (+)
G755368 NA non-coding upstream 2793 83843057 ~ 83843553 (+)
G755372 NA non-coding upstream 49172 83794994 ~ 83797174 (+)
G755322 NA non-coding upstream 134352 83711593 ~ 83711994 (+)
G755318 NA non-coding upstream 140983 83705143 ~ 83705363 (+)
G755314 NA non-coding upstream 147826 83698262 ~ 83698520 (+)
G755366 NA non-coding downstream 14478 83886039 ~ 83886665 (+)
G755370 NA non-coding downstream 19483 83891044 ~ 83891688 (+)
G755357 NA non-coding downstream 34664 83906225 ~ 83908702 (+)
G755405 NA non-coding downstream 39887 83911448 ~ 83911724 (+)
G755298 NA other upstream 186300 83658097 ~ 83660046 (+)
G755277 NA other upstream 191908 83653045 ~ 83654438 (+)
G755286 NA other upstream 216608 83629372 ~ 83629738 (+)
G754927 NA other upstream 588480 83255739 ~ 83257866 (+)
G755363 NA other downstream 15253 83886814 ~ 83889637 (+)
G755428 NA other downstream 97817 83969378 ~ 83970697 (+)
G755585 NA other downstream 390426 84261987 ~ 84262966 (+)
G755602 NA other downstream 431909 84303470 ~ 84308274 (+)

Expression


Co-expression Network