cdcp2 (cdcp2)


Basic Information

Item Value
gene id cdcp2
gene name cdcp2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 83954240 ~ 83958783 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614304.2
CAAGGGGTGAAATGTGGTGGGATCCTCTCTGCCTCTTCCGGCAACATCTCCAGCCCCAACTACCCAGGTCAGTACCCGTACAACATGGAGTGTGTGTGGCTGATTGTAGTGGCCGAGGGGTCCTCCGTCCTGCTCACCTTCCACGACTTTGAGTTGGAGTATCACGTCACCTGCTCCTATGACCACATCAAGATCTATAACGGTGTATCCGAGGATGAGGGGAACCTACTGGGGACGTTCTGTGGTGTCATGTCCCCTCCTCAGTTCACCTCCTCCTGGAATGTGATGTCGATCATTTTCCACTCCGATCGTCATGTGACTCACAGAGGGTTCTCTGTGAGCTACAGGAAAGacaTGTGTGGTGGGGTCCTAACCGGTCTGTCTGGCATCATCTCCAGCCCCGGCTACAGTCCAGATACCCAGTACAGCAACAACGCCGACTGTTCCTGGACGGTCCATGTATCCAACCGCAGCGTGGTCAGTCTGGTCTTCCTCGACTTCCAGCTGGAGAACAACGAGGGCTGTAACTTTGACTTCGTGGCTCTCTTCGACGGCCCCACCATCACTCACAGACACCTGGGGAACTACTGTGGAGGGGAGACACCTCCTAAAATTGTTACTACCTCCAACCAGCTGCTGGTGGTGTTCAAGTCTGACTTCAACATCGGGGGACGAGGGTTCAAGGCTTACTACTACTCAGGTGAATGCCAGCAGGTGCTGTCTGTACCAAGTGCAAATTTCACCAGCCCCCACTACCCTAACATCTACCCAAACAACATCAACTGTCACTGGATCATCAACCTGGCCGGGGGCTACCGCATCAAACTGTTCTTCAACGCTATGGAGCTTGAGGACAGGAACAGCCTATCAGACGAGTGTGACTATGACTCTGTAGCAGTGCATGATGGGAGCAGGGAGACAGCCCCGTTGCTAGGGCGATGGTGTGGCTCGGAACAACCCGGGTCTTTGATCTCTAAGAGCAACAACATGCTGGTGGTCCTCAGTACAGACAGGAATTATGCTTATAAAGGGTTCTCTGCTTCCTATGTTGGAGTGGTACCAGTTAACATCAGCTGTACGAGGACAGAGTTTACCATCCACATCGCCCAGCAGTCACTGCCTGGGCTGGAACGTGAGAGTATCTATCTGGGGGACCGCTCATGTCCCGCCCAGCTGACACCTACCACCTATAAGATACTGGCACGTTTTGAAAAATGTGGCACTGCAGGCCAGCCACGGCGTAACATCACCATGCTGGTGAACACGCTCTACATCGACTTCTCCGACGGGAAGGGGAGGAGCATCCAGGAGTACGAGGTACAGTGCGACGCCCAGCGCAAGATGGCCACCATTCACATCGTCTCAGCCGAGGAGCGCCAGAGGATGAACGAGCTGGCCCGACGCCAAGCAGAGGGgtctgggggagggggagggaaggaggcagaCCCAGAGCCTCACGACCCCAGTGATATAGTGTTTATTAGCATCTGTGTGCTGGCTGTTGTACTGATGGTGATCGCTGTAATCTGGCTGGTACTGCTTTAGTAGAGATGGGGGTacgaggagggagaagagggcagAGGTGGGCGACGCAGTCTGTGAGCCAGGACACGTTGAGGTTTATAATGAAAACTGACAGATATATTTTTGTAATAAAATGTCTATATTGCTCATTTCAATTGTATCAAAACAATTATTTAATATTGTCGCCACTCTTGGCATTCATAACGACATTCAATAAAAACACAGGCAGAGATCAACATTTGATTTACTTCAATATATAAAATCTAAGATGAATACAAAACAGCTCAATTAAAAGAGGTAGGCCTAATTCATACGATTAATAACCGTGTGCTCCAACTGTCTTTCACCATTTTATAAAAAGGCACCAGTCCAGTATTTGCCAGAATGTCCCAGGTTTCCAGACAGGTGTTCGGGGCTAAGTGgccagctatatatatatatatatatatatatatatatatacagtaccagtcaaacgtttggacactaCTCATTCAAAAGGttattcttaattttttactattttctacattgtagaataatattgaag

Function

symbol description
cdcp2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human CDCP2 (CUB domain containing protein 2).

NR:

description
CUB domain-containing protein 2, partial

GO: NA

KEGG:

id description
K24792 CDCP2; CUB domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614304.2 True 2074 mRNA 0.49 6 83954240 83958783

Neighbor

gene id symbol gene type direction distance location
tmem59 tmem59 coding downstream 3450 83934563 ~ 83960923 (-)
LOC110530817 ldlrad1 coding downstream 28323 83922742 ~ 83925917 (-)
ccl25a ccl21 coding downstream 155037 83721046 ~ 83799203 (-)
LOC110530808 cib3 coding downstream 187968 83760892 ~ 83766272 (-)
cib3 cib3 coding downstream 197345 83749584 ~ 83756895 (-)
LOC118965640 NA coding upstream 44534 84003317 ~ 84004529 (-)
LOC118965621 NA coding upstream 77994 84036777 ~ 84038336 (-)
LOC118965567 NA coding upstream 537651 84496434 ~ 84497690 (-)
gorasp1a LOC106569800 coding upstream 1188125 85146908 ~ 85156401 (-)
LOC110530840 LOC106569802 coding upstream 1205002 85163785 ~ 85201362 (-)
G755807 NA non-coding downstream 23234 83930666 ~ 83931006 (-)
G755800 NA non-coding downstream 32306 83921231 ~ 83921934 (-)
G755798 NA non-coding downstream 36263 83917517 ~ 83917977 (-)
G755795 NA non-coding downstream 42766 83911202 ~ 83911474 (-)
G755816 NA non-coding upstream 7456 83966239 ~ 83966484 (-)
G755818 NA non-coding upstream 13319 83972102 ~ 83972357 (-)
G755820 NA non-coding upstream 15770 83974553 ~ 83974835 (-)
G755823 NA non-coding upstream 23247 83982030 ~ 83982874 (-)
G755830 NA non-coding upstream 38042 83996825 ~ 83997037 (-)
G755142 NA other downstream 573267 83378942 ~ 83380973 (-)
G754333 NA other downstream 1982151 81970600 ~ 81972089 (-)
G754276 NA other downstream 2032708 81920002 ~ 81921532 (-)
G754262 NA other downstream 2119105 81833962 ~ 81835135 (-)
G755959 NA other upstream 338382 84297165 ~ 84297535 (-)
G756592 NA other upstream 455704 84414487 ~ 84415800 (-)
G756727 NA other upstream 688681 84647464 ~ 84648224 (-)
G757086 NA other upstream 1443835 85402618 ~ 85404005 (-)
G756981 NA other upstream 1454648 85413431 ~ 85414702 (-)

Expression


Co-expression Network