LOC110531035 (LOC106569797)


Basic Information

Item Value
gene id LOC110531035
gene name LOC106569797
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85002397 ~ 85107517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986589.1
GAAAAGATGGCAGCCATGCTGTTACCAACGGGTCCTGATGGCTTGCGCCGGTTCACTCGCGAATCCCTGGCCGCCATCGAGCAGCGGATTGCCGAGGAGCAGGCCAAGAACGCCAAGGATTACCAGGAGGATCTGGGCAACGTGGAGCTGCCCATGCCCAGGCCCGACCTGGAGGCCGGAAAACAACTTCCACGCATCTTTGGTGACATTCCCCCAGGACTGGTTGGGGTACCTCTGGATGACATCGATCCCTTCTACTTCAAGAATCAGAGGACTTTTATAGTAGTTAACAAAGGGACGGCCATCTTCCGGTTCAGTGCCACGTCTGCTCTCTATATATTTACCCCTTTCACCTTCCTCAGAAGAATCTCCATCAAAGTCCTGGTCCATTCATTATTCAGCTTGTTCATCATGTGTACTATTCTGACCAACTGTTGCTTCATGGCCATGTCGGACCCTGCCCCTTGGACCAAGTACCTGGAGTACACGTTCACCGGTATCTACACCTTTGAGTCCATGATAAAGATATTTGCGAGAGGATTCTGCGTCGGGCCGTTCACCTTCCTGAGAGACCCATGGAACTGGCTAGATTTTAGTGTAATCTCTATGGCATATCTCACGGAGTTTGTGGATCTGGGAAACGTGTCTGCGTTGAGAACATTCAGGGTCCTCCGAGCGCTGAAAACCATCTCTGTCATTCCAGGCCTAAAGACCATCGTTGGTGCTCTGATCCAGTCAGTGAAGAAGCTTGCGGACGTGATGATCCTGACTGTGTTCTGCCTGAGCGTGTTCGCCCTCATCGGCCTGCAGCTCTTCATGGGCATCCTGCGGCAGAAGTGCGTCCGTAGCGCGGCACACTGCGTCAACTCCTCATACAACGTCAACGACACCTTCACCTGCAACAACAGGACCTGGAGCTCCATGAATGACTTCGTCACCAATGaagATAATTTCTACAAAGTTGAAGGAGCAAAGGATGCCTTAATTTGTGGATATGGACAAGATGCAGGGAAGTGTCCTGAGGGATTTGACTGTCTGAGAATAGGAAGGAACCCTAACTATGGTTATACCAGCTTCGACAGCTTTGGCTGGGCTTTCCTGGCGCTGTTCCGGCTGATGACCCAGGACTACTGGGAGAACCTCTATCATCAGACTCTGCGTTCAGCAGGGAAAACCTACATGGTCTTCTTTGTGCTGGTCATCTTTCTGGGTTCCTTCTACCTGGTCAACCTGATCCTGGCTGTGGTGGCCATGGCCTACGAGGAACAGAACCAGGCCACCATCCAGGAGGCCTGGATGAAGGAGAGGGAGTTTCAGCTGGCCATGGAACATGTACGCAGAGAACAGAGGATGGCCGAGAGAAGAATCCAGCAGGAGACAGACTCGGTCATGTCTCCAGAGCTGTCACCGTTTCAACTAAAAGTGGGCAGTAGTTTGAAACGGACAGCCAGTAGAAGATCTCGCAGGATGCTGTCCGAGGATCCAGAGGACGAATCAGACGAGAAGTTTGATCCACTGGACGAGCGGGTGTCCCCCCTGCCTCCCACGTCTCCCATGCCCGTCCACCCTCTCCTGGCTGCCATGTCGTCCCACCCTCTCAGCACTCGCCGTGGCAGCCAGGCCAGTATCTTCTCCTTCAGACCCTGTACCACCTCTGATGCCGACTTCGGGGATGACGAGTACAGTGTTCACGGGGACATCATGGGGAGGAGCAGGGCAGGCTCCACCATCGGCCCCAACTGGCAACACAAGCACAAAAGGACAGGCAGCGTGAGGAGCCATTGCTCCCAGGTCTTCACccccagtctcaacatcaacggaCGTCTCAACATCTCCCTGGACCAGAACGGCGTCACCACTGTCGGCCTGCacacccccacctccctccccgccTGCAGCATGGAGAAGGTCAAAGAAGATAAAGAGCCCACCTGTTTAGAAGAGTCCAGTGCCAAGCCAGCCCAGCTCTCCCCCGAGACTGCAGAGCCTCCCCTCCGTCGGAAACGCGGTCTGAGCTCCATTAGCTTCCTCAGCGATGCCATGGATGGTGAGGGTACcttcagagAGCTGGAGGAGTCTCGTCAGAAGTGCCCCCCGTGCTGGTACACTTTTGCCAAGGCgtacctgatctgggacaggtgcCCGTGGTGGCTGAAGGTAAAGGAGTATGTGAAGATGATTGTGATGGATCCCTTCCTAGACCTGGCAATAACCATCTGTATCGTCCTCAACACCCTCTTCATGGCCCTGGAACACTACCCCATGACCGACGAGTTCAACAATGTGCTCTCTGTTGGCAATCTGGTGTTCACGGTGATCTTCACAGCAGAGATGGTGTTCAAGCTGATAGCCATGGATCCATACTTTTACTTCCAGCAGGGCTGGAACATGTTTGACGGCATCATCGTCTGTCTCAGCCTCATGGAGCTGGGCCTGTCCAACGTAGAGGGACTGTCTGTCCTGCGCTCCTTCAGACTGTTGCGAGTGTTCAAGCTAGCGAAGTCATGGCCCACCCTGAACACACTGATCAAGATCATCGGTAACTCCGTGGGCGCTCTGGGAAACCTGACCCTGGTGCTGGCCATTATCGTCTTCATCTTCGCGGTGGTGGGCATGCAACTGTTCGGCAAGAACTACCAGGACTGCGTTTGTAAGATCTCTAAGGATTGTATGTTACCCCGCTGGCACATGAAGGACTTCTTCCACTCGTTCCTCATCGTGTTCCGGGTGCTGTGCGGCGAGTGGATCGAGACCATGTGGGATTGCATGGAGGTGGCAGGGCAGCCTCTCTGCATCCTAGTCTTCATGCTGGTCATGGTCATAGGAAACCTGGTGGTGCTGAACCTGTTCTTGGCCCTGCTGCTCAGCTCGTTCAGCTCAGACAACCTGTCGGCTCCCGACGAGGACGGAGAGATGAACAACATCCAGATCGCCGTCGCCCGCATCCACACGGGGTTCGCCTGGCTGATGAGGAACGTCACCGATCTATTCAACGGAAACCTGAAGAAGAGACGTCTCATGACTAAAGACGTTCAGATTTCTGTGAGGCTGACACCCGTAGCGAATCACGTGGAGAGTAACGGTGGGGTGGGGGTCGGGGTGGTGGGGGTGATCGGACGCTACGGAGAGAAGGTCCCGGACGACGACAGCTACATGACCAACCCCAACCTGACCATCAGTGTGCCCATCGCTCCAGGGGAGTCGGACGTGGAGTTCCctgaggaaggagaggtggaggaggagacggagtcGTCAGAGGACGAGGACAACAAAGCGGAAAAAGTGAGCCTATCAGAAGGCAGCACGGTGGACTTGCGGAAGCcaggggaggaagaggatgacTTCTCTGAGACGGCTGACGATGTTATGGAGCCAGATGAATGTTTCCCTGAATtctgtgttcGCCACTGTAAGTGCTGTGAGATCAACACGACACGGGGCCTGGGTCAGGCCTGGTGGAGACTGAGGAAGACCTGTTACCAGATTGTTGAACACAGCTGGTTCGAGACTTTTATTATCTTCATGATCCTGCTGAGCAGTGGTGCTCTGGCATTTGAGGACATCTACATTGAGAAAAGGAAAGTGGTGAAGGTAATCTTGGAGTACGCTGATAAGGTCTTCTCCTACATATTCGTCCTAGAGATGTTCCTCAAATGGATTGCCTACGGCTTCAAGAAGTACTTCACCAACGCTTGGTGTTGGCTGGACTTCCTCATTGTCGATGTGTCGTTGGTGAGCCTGGTAGCTAACTCTCTGGGCTACTCTGACTTTGCTGCCATCAAATCACTGAGGACTCTCCGAGCGCTGAGGCCCCTAAGGGCCCTGTCCAGATTCGAGGGAATGCGGGTGGTGGTGAACGCACTGATTGGAGCCATCCCATCCATCATGAACGTCCTGCtggtctgcctcatcttctggctCATCTTCAGCATCATGGGAGTCAACCTGTTCGCAGGGAAGTTTGGTAAATGTGTGAACCGGACAGGGTTCATCCACAATGCTTCCATCGTCAACAACAAGTCAGAGTGCCTGGCCATGAACGACACTCAGTTTTATTGGACTAAAGTCAAGGTCAACTTCGACAACGTGGGATTAGGATACCTCTCACTGCTGCAAGTGGCCACGTTTAAAGGATGGATGGAAGTTATGCACGCAGCTGTTGATTCACGTGGCgtaGAGGAGCAGCCAATCAGGGAGATCAACCTCTACATGTACCTTTACTTTGTCATCTTCATCATCTTCGGATCCTTCTTCACTCTCAACCTCTTCATCGGCGTCATCATTGATAATTTCAACCAGCAAAAAAGAAAGATAAGTGGACAAGACATTTTCATGACTGACGAGCAGCGGAAGTACTACAACGCTATGAAGAAAATAGGCTCTAAAAAGCCCGAAAAGCCTATACCAAGACCTACGAATATCCTCCAAGGCTTCTTATTTGACCTGGTATCCAAGCAAGCCTTTGACATCATCATTATGATGCTGATCATCGTCAACATGGTGACCATGATGGTGGAGACAGACGATCAGTCCGCACGCATGGAGTCCATTCTCAACAAGATCAACCTGATTTTCATTGTCATCTTCACCACCGAATGCCTCATGAAGATCGTGGCACTTCGTTGCTATTTCTTCACCGTGGGATGGAACATCTTTGACTTTGTGGTTATCATCCTCTCCATCGTTGGTATCGTTCTGGCTGACATCATTGAGAAGTACTTTGTATCTCCGACTCTGTTCCGTGTCATCAGACTGGCAAGGATAGGACGCGTACTTCGACTAATACGTGGGGCCAAAGGAATAAGGACTTTACTGTTTGCCTTAATGATGTCCATGCCAGCGTTGTTCAACATCGGCCTCCTGCTCTTCCTCGTAATGTTCATATACGCTATCTTCGGAATGGCCAACTTCGCTTACGTGAAAAAAAAGGAAGGGATAGATGACATGTTCAACTTTGAGACCTTTGGGAATAGTATGATCTGCCTGTTCCAGATCAGCACTTCCGCCGGGTGGGACAACGTCCTGGAGCCCATCATGTCTAACTCCCCAGAGGAGTGTGAAGCCTACGTCGTCAACACCGGCACCAATGTCCGAGGAAACTGCGGCAACCCGTCTGTGGCAATCGCCTTCTGTGTCAGCTACATCATCATATCGTTCCTCATCGTGGTCAACATGTACATCGCCATCATCCTGGAGAACTTCAGCGTGGCCACCGAGGAGAGCACCGAGCCGCTGAGTGAGGACGACTTCGAGATGTTTTACGAGGTGTGGGAGAAGTTCGATGCAGAGGCCACCCAGTTCATAGAGTTCTCCAAGCTGTCGAATTTCGCAGACAACCTGTCGGAACCCCTGCGCATCGCCAAGCCTAACAAAATCAAGCTGATCTCTATGGACCTGCCGATGGTGAGCGGGGACAAGATCCACTGCCTGGACATCCTGTTCGCCTTCACCAAACGTGTGCTGGGCGAGTCGGGCGAGATGGACGCCCTCAAGCAGCAGATGGAGGAGAAGTTCATGATGGCCAACCCGTCCAAGATCTCCCACGAACCAATCACTACGACCCTACGCCGCAAGCAGGAAGACGTGTCTGCCATCATCATCCAGCGCTGTTACAGACGCCACCTGTTGAAACGGCAGATGAAACAGGCCTCATTCCTTTACAGACAGAGGAACCTTCAGACCAACCTGAACTTGCAGGAGCACATAGTGGTGGACATAGAGAGGGCCCCGGAGACGGAGGGCCTCATCGCCGCCATGATAAAGGAACACTACGGCCCCGAGGGGCCCgacgaggaggaggagctggTAGGGGTCATGGAAGGGACTCTGTCCTCCTCACCGCCATCTTACGACAGTGTGACCCGGCCGGGGGCGGCTAGTGACGTTGGTCAGATAGAACGGCTAGAAAGGCCGGGAGACTTAGTGTTAGAACTCAGGGAACCTAGCCCCTCACAAACAAATAGGGAACCGAGCACCTCACAAAGATATAGGGAACCTAGCACCTCACAAACATATAGGGAACCTAGCACCTCACAAACATATAGGGAACCTAGCACCTCACAAACATATAGGGAACCTAGCACCTCACAAACATATAGGGAACCTAGCACCTCACAAACATATAGGGAACCTAGCACCTCACAAACATATAGGGAACCTAGCACCTCACAAACATATAGGGAACCTAGCACCTCAGAAACAAATAGGGAACTTAGCACCTCACAAACAAATAGGGAACTTAGCACCACACAAACAAATAGGGAACTTAGCACCACACAAACAAATAGGGAACTTAGCACCTCACAAACATTTGAAGAGACATTTCTTTGAGATATTGTTTTCAGGaaacatgttttttgttgttgttgttttgtttacaaCATGTACAGTATCATAACTCGGAACAACTCTCTCGGTACCAGATGAACATTTTTATAGCAGAAAATACCCAGGAATTTCATTGGTAAAAATGCAAATATTGCTTTTCTATTATTTATATAAGACCCTTTGTCAATCAAACAATCATATGATATTGTGTATTAATAATGTTTAGAAAACCCAGGCGCCATTTTGAAGATGGCGATTCCACTataaaaatgtataataagcTGTACCCAAAGTAAAAGAAAGGTTGagtcaaaaaaaaaagaaacttaTAAACAAATGTGTGATTTCATATATTCTGTCATAACGGTTCATTAACCAGTAAGTGTAAATGACAATCAATCAGCTCTGAATAACATTTTAGAAGTTGGATTGTTTTTGTTTTACAAAATGAATAGAGATAAATATGGAGTGTTTAGAAATATGGATAAATATGGAGTGTTTAGAAATATGGATAAATATGGAGTGTTCTCGTTTTGATTACAGATGATGAActcttctctttattttcaaaaAAGAAAATGGCAGCTTTGATttgctaaaaatatatatatttatgaaaaaaagtatatttaagtatattttctTATTAATGGATATTTCAGGACAAATGTTGTTGTTCTTTTCTAACTAATGAGTTAATATGGTAAAGACCACATTATTTGATCAGAAGTgtatagtttatatatatatatatatatatatatatattatgcacTAAATTTAGTTTATTGCATGATCGGTATATTAAAAACCCCATGGTGAAGGGTTGTGTATAGTACTAACTGCAACATAATGTGCCTGATAATGGTTGTCTGTCATCTGCATACTTTAGTCCCCTTTTAACCATTTCATTGGACCTGTGGAAGTAGATGGGGGGGGAGTAGAAATATACATTACAAACATATGTTATATTGACCTACGTAAAGAGTTTTGGGGGCATTCATGTCAAACATTTATATCTATCTTttataatgtatttatattttaaGGTTATCTCAATGACAGTCCATACGTATATATAGGGATCATAGCCAGAGCGATCAAATGATGTGTGTACAACTGCATTCATTATTTTTACATGAAAGATGATAAGATACTTCCTTGAAaaccttcccccccccccatattaCATTTAAGTAGGTAATCACTATATCAAACAATATTAAAAGATTTTTCCATAGTTGGGAGTTTTCATTTTGTTACAGCTAGTTAACAAATGGTACACTATTGTTTTCTAtcctattttattttaatttgactttttaaaaaatttttttttttttttacatgttataGCCCTTAATTATTACAACATTTCTGCATATATCAGAattgatttatttcaaattcacTGGTTTTATCCCTCTTGCCTTTTTCTATTAGACACATCTACACATTGTGGCATGTCAATGCATACTAACATTCACGATCAAACTCAAAATACAGTACGATATTTTGAGCAACCTGAATAACCTGAACAATCCCCATATTACACGGTTTCTTCGGGTCCCAAATCAAGACCGATGACCGTCTCGGTCTGTTTTTATCACAGTGAAAACTAGTTAGCTACAATGACCTCAATAGTGGACAGGGGTTTCCAGGTGTCACATGTAAATCCGCTCCCCGTCCGTGTGTTTCAAAGAaggagaaaaaacaacaacagctgTGCACATTTGCAACCCTCCATTATTATACTGTGGCTGAGAGACTTACTGCTTTTACAAGTTCATTTGGTCTGTGATGCTTTGTGGATACTGCTGGAAAATGCATGTAGGTTAAGCGTGACTACTGTAGAGTAAGTAAACGTCGAACAGAGTCCAAAAACACTTACTGTAAGGGAATTAAATGAGCTATGATGTTTTAATTCcgaaaaaaatatctgaaaaaaacattttatttggtcTTTCTCCATCACTCCTATTGAATCACTTGACATTGGGCTATGTTTTATTAACTCTTAGGTAAGGTTTGGACTGTTTTCATGATCCTTCTAGTACTTACTTTTAATAAAAGcagagatgtatttttttttgtcttttatttaataaggcaagtcagttaagaacaaattcttatttaca

Function

NR:

description
PREDICTED: sodium channel protein type 4 subunit alpha-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986589.1 True 8468 mRNA 0.47 27 85002397 85107517

Neighbor

gene id symbol gene type direction distance location
capsla capsl coding upstream 24295 84973597 ~ 84978102 (+)
LOC110531029 LOC106569826 coding upstream 32201 84966226 ~ 84970196 (+)
LOC118965569 NA coding upstream 37399 84942974 ~ 84964998 (+)
LOC110492646 LOC105022906 coding upstream 70753 84436488 ~ 84931644 (+)
LOC118965568 NA coding upstream 197825 84801273 ~ 84804572 (+)
LOC110530843 LOC106569799 coding downstream 17041 85124558 ~ 85144377 (+)
xirp1 LOC106569803 coding downstream 101091 85208608 ~ 85234446 (+)
LOC118965572 NA coding downstream 149509 85256782 ~ 85264093 (+)
LOC118965573 NA coding downstream 181262 85288779 ~ 85290009 (+)
LOC118965574 NA coding downstream 208392 85315909 ~ 85317139 (+)
G756314 NA non-coding upstream 38930 84961547 ~ 84963467 (+)
G756305 NA non-coding upstream 52857 84949319 ~ 84949540 (+)
G756301 NA non-coding upstream 63602 84938501 ~ 84938795 (+)
G756300 NA non-coding upstream 63913 84938205 ~ 84938484 (+)
G756299 NA non-coding upstream 64289 84937832 ~ 84938108 (+)
G756372 NA non-coding downstream 8018 85115535 ~ 85131519 (+)
G756388 LOC106569802 non-coding downstream 56096 85163613 ~ 85165864 (+)
G756389 NA non-coding downstream 61255 85168772 ~ 85172233 (+)
G756391 NA non-coding downstream 66295 85173812 ~ 85174459 (+)
G756409 NA non-coding downstream 82277 85189794 ~ 85190508 (+)
G756298 NA other upstream 64653 84936066 ~ 84937744 (+)
G756271 NA other upstream 124318 84876994 ~ 84878079 (+)
G756134 NA other upstream 440506 84558786 ~ 84561891 (+)
G755602 NA other upstream 694123 84303470 ~ 84308274 (+)
G755585 NA other upstream 739431 84261987 ~ 84262966 (+)
G757472 NA other downstream 844451 85951968 ~ 86028274 (+)
G757663 NA other downstream 1010146 86117663 ~ 86117948 (+)
G757754 NA other downstream 1122834 86230351 ~ 86231459 (+)
G757902 NA other downstream 1423636 86531153 ~ 86532379 (+)

Expression


Co-expression Network