LOC118965572


Basic Information

Item Value
gene id LOC118965572
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85256782 ~ 85264093 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052982.1
CAAAGGAACACATGGAGCTAATTACATGGTCAAAGCATATAGGATAGAGGGACGTATATTATCTTTAGGTCAAAGCAAGGGTCTTGTCACCATTATAATTTAACGGAAAGCAGATGTGGATGTTATCGAgctgaacaagcaggatgcacaaattgggatataatggtggcagatggactgagggaagtgacgtcatttgcatgtgggatggactcctgttgtatgtgtataaatcagagccagaactctgaaaaagtgtgtgttccgcggaccactCCGGCTTGCGATACTCTTGTATTAAAAGTCTATTATTGAATTCACAGGTTCTTGCAAGTGTCATATTTTGAAATGATTAGCCACGACATAACTTGGCGCGCTTTTGCCAGGAGTGACAGGGACGGAGGCGTCCTTGGCTGACGGCGGGTTCTTTGGACAATCTGGCAAACAAGGGTGGCCGCCCAACTATAACAAGGAAAAACAGCACATAAGAGGCCAGATGGAAGGGCATGGGCTGAATTCTGGAGACTGAGGGTACATGAAGATACACCGGGCTGGGGATATACTTCATACAGCACCTGCAGTGGTAAAGATCGTCATGTCTCTCTTTGGTGGGTGCATAAGTTTCACAAGAAGTAAGGTCCAGCTGAATAATGGGTGAGCTTGAAAACACCATGACAGAGGACGtgaaacaaaagagagagaaagagagagactagattcCACTGTAGACATACTGGGTTGAGTTTGGGGGTTACTTGTTTTATTTGTTAATGTATCATGTGAAAAAGGATAGATGTTAGGGTAGTTGTACTCTAAACAACATGTTGAAGGCTCGATGTGAAAGCCCATACAGTGTTGAATTACTTCAAGAAGAAATAATGTTGACTAAGGTTATGCATATCAGTTGAAATAGAGCAGATGGGGAACTAAGTAAAAAAATGACATGATTTGGGAACACCTCTCAGAACCTGCGGCCGAAAGGGGAAGACTGGATGAAAGCACGAGGAAGCCAATTAGGGCCTCCATTTTTGTGGAGTATCCTGGAGGCATAgagtcaggtgaagagagagtgggaattgtCATGGTCTCAGATTTCAGTATTCATGAATACAGTCATGCATAACACATAACATTGTCAATACTGTTATGTTTTGTCCTTTGTTTTCCAAGTCTTATGTTTAGGAAACCAGATGGAGAAGGGTTCGCCAGCTTCAGCTGGAATGTCAGTTTGTGTGATGAGTGATGGAAGTAAGATAATGTATGGTGTAATCATAGAACAGAGGCCATAAGTCTCTAAGTATGAATGCCCCACAGAAAGAAGGCAGAAACCTGAACCAGGACGAGAGGTTCCACATCTGATGATCCTAGGGGACCAGAAGGACCTCTCCCAGTGATACCAGGAGATCTAGTCTACGTTCGAGTGTTCCGAAGGAAGTGGGATCAGCCGAGGAGAGAAGGACCCTACGAGGTGGCAATAGCCACAAACACGGCCGTCTAAGTGAAAGGAAGCAAGACGTGGTATCATCTAAACCACTGCACCCGAGTCCCGACGGAGAGAAGGACACAACCATACAGAGATGAGGACACAGAGGATGCTGATTCACCAGGCGGGACCCCGGAGGGAGCAGGAGCAGCGGAAACGATCAAAGCGCCGGGGAGGAATCAAGAAAATGGCAGACTAGATACAACGAGTGCATCAACTAAACGCACTCAGAAGAAGCACCAGGGGAAAAGAG
>XR_005052983.1
ACGAATGAATGAGAAGAATGCTGTAATATAATTCTGTGTGAGGATAGAACAGTAGGAATGAGgacaggttgtgtgtgtttagACAGAAAGTCCAGAAGAGGGAGCGCGCAGCCCTCCTGTGACAGAGTATAAAGTTGAAGAAGGGTGCCTGTGACTTCTTCTGGCTGGCCAAAAGTGATCCTCTATCACAGTTTAATACATTTACAGTGATCCCTATCATAGTTTAACTACTATTAGGCAGAAGGAACGAAATTAAGGAACATCAAAGTAAAATAAGTTATAAGCAAAGATAAAAACACAGTGATATTTGAGGTGCTGTACTAGAATAAGACATTAAGGCTTTTGTAGTATTCAGTAATACAGTTGTAGACATTATAGAGTAGGTTTTAAAAGGAGGTATTAAGTGATGTGactaataaattattatttgggAAAGTAGGGTAGCTCTACCTTGGGAAATAGTAAATAAAGTGTAGAATGCGATGGGAGTGTTTAGGAAAAATAAATAGTGGCATGGAAACAAATGGACTGTTTCTCCCTGGAATATAGAGATAGCAAAATTTAATAAAGCCATAGAGTCACTGAAAGAAACACACATTAATTCTACCAATTCGGCTTGAATATGAAAGAGCAAACCGTATAATGTAGGGCAACATTACCCGGTAAAcaggataaataaaataatgaattggAACGATCACATAAAACCATAACAAGACGCTTAACTTACCAGCGTTTTAATGATAATTAACATTATATCATCAGAAATACATTACGATGGGGGACAGATATGATTCTGCTTGCCATCGCAGACGTGCGAATGGTTTGCAAAGCTATAGAAAATATCTAAGCGTAAGAAGTTGTAGATGTGGAGCTAACAAGTATGGGGGAAAATGAGTGTAAGATGACACTGGAACttagtgcggtagcagagaatgCCTCTATACAGGAGTTTGTACCCTTTTCAAAAGAGCAACAACTAATCGTTTTAAGGAAAAACAGCACATAAGAGGCCAGATGGAAGGGCATGGGCTGAATTCTGGAGACTGAGGGTACATGAAGATACACCGGGCTGGGGATATACTTCATACAGCACCTGCAGTGGTAAAGATCGTCATGTCTCTCTTTGGTGGGTGCATAAGTTTCACAAGAAGTAAGGTCCAGCTGAATAATGGGTGAGCTTGAAAACACCATGACAGAGGACGtgaaacaaaagagagagaaagagagagactagattcCACTGTAGACATACTGGGTTGAGTTTGGGGGTTACTTGTTTTATTTGTTAATGTATCATGTGAAAAAGGATAGATGTTAGGGTAGTTGTACTCTAAACAACATGTTGAAGGCTCGATGTGAAAGCCCATACAGTGTTGAATTACTTCAAGAAGAAATAATGTTGACTAAGGTTATGCATATCAGTTGAAATAGAGCAGATGGGGAACTAAGTAAAAAAATGACATGATTTGGGAACACCTCTCAGAACCTGCGGCCGAAAGGGGAAGACTGGATGAAAGCACGAGGAAGCCAATTAGGGCCTCCATTTTTGTGGAGTATCCTGGAGGCATAgagtcaggtgaagagagagtgggaattgtCATGGTCTCAGATTTCAGTATTCATGAATACAGTCATGCATAACACATAACATTGTCAATACTGTTATGTTTTGTCCTTTGTTTTCCAAGTCTTATGTTTAGGAAACCAGATGGAGAAGGGTTCGCCAGCTTCAGCTGGAATGTCAGTTTGTGTGATGAGTGATGGAAGTAAGATAATGTATGGTGTAATCATAGAACAGAGGCCATAAGTCTCTAAGTATGAATGCCCCACAGAAAGAAGGCAGAAACCTGAACCAGGACGAGAGGTTCCACATCTGATGATCCTAGGGGACCAGAAGGACCTCTCCCAGTGATACCAGGAGATCTAGTCTACGTTCGAGTGTTCCGAAGGAAGTGGGATCAGCCGAGGAGAGAAGGACCCTACGAGGTGGCAATAGCCACAAACACGGCCGTCTAAGTGAAAGGAAGCAAGACGTGGTATCATCTAAACCACTGCACCCGAGTCCCGACGGAGAGAAGGACACAACCATACAGAGATGAGGACACAGAGGATGCTGATTCACCAGGCGGGACCCCGGAGGGAGCAGGAGCAGCGGAAACGATCAAAGCGCCGGGGAGGAATCAAGAAAATGGCAGACTAGATACAACGAGTGCATCAACTAAACGCACTCAGAAGAAGCACCAGGGGAAAAGAG
>TU859221
aacacaagagagagatacacttatagagtgcatttgccattctggtaaaatgcattgtctattgtataggacaggaagccagagtaaggccatgagagtaTGGGACAGCTGGAAACACTAAAAATGGAGACACATAGTCTGCTGATATTAGACAACCACATGAAGAGAAGGCGACACATAGGCGCCAGGACAGCTGGACACACTAAAACTAGAGGAGACTGATCCGAGATAAAAGACACACATACAAAGGAACACATGGAGCTAATTACATGGTCAAAGCATATAGGATAGAGGGACGTATATTATCTTTAGGTCAAAGCAAGGGTCTTGTCACCATTATAATTTAACGGAAAGCAGATGTGGATGTTATCGAgctgaacaagcaggatgcacaaattgggatataatggtggcagatggactgagggaagtgacgtcatttgcatgtgggatggactcctgttgtatgtgtataaatcagagccagaactctgaaaaagtgtgtgttccgcggaccactCCGGCTTGCGATACTCTTGTATTAAAAGTCTATTATTGAATTCACAGGTTCTTGCAAGTGTCATATTTTGAAATGATTAGCCACGACATAACTTGGCGCGCTTTTGCCAGGAGTGACAGGGACGGAGGCGTCCTTGGCTGACGGCGGGTTCTTTGGACAATCTGGCAAACAAGGGTGGCCGCCCAACTATAACAAGGAAAAACAGCACATAAGAGGCCAGATGGAAGGGCATGGGCTGAATTCTGGAGACTGAGGGTACATGAAGATACACCGGGCTGGGGATATACTTCATACAGCACCTGCAGTGGTAAAGATCGTCATGTCTCTCTTTGGTGGGTGCATAAGTTTCACAAGAAGTAAGGTCCAGCTGAATAATGGGTGAGCTTGAAAACACCATGACAGAGGACGtgaaacaaaagagagagaaagagagagactagattcCACTGTAGACATACTGGGTTGAGTTTGGGGGTTACTTGTTTTATTTGTTAATGTATCATGTGAAAAAGGATAGATGTTAGGGTAGTTGTACTCTAAACAACATGTTGAAGGCTCGATGTGAAAGCCCATACAGTGTTGAATTACTTCAAGAAGAAATAATGTTGACTAAGGTTATGCATATCAGTTGAAATAGAGCAGATGGGGAACTAAGTAAAAAAATGACATGATTTGGGAACACCTCTCAGAACCTGCGGCCGAAAGGGGAAGACTGGATGAAAGCACGAGGAAGCCAATTAGGGCCTCCATTTTTGTGGAGTATCCTGGAGGCATAgagtcaggtgaagagagagtgggaattgtCATGGTCTCAGATTTCAGTATTCATGAATACAGTCATGCATAACACATAACATTGTCAATACTGTTATGTTTTGTCCTTTGTTTTCCAAGTCTTATGTTTAGGAAACCAGATGGAGAAGGGTTCGCCAGCTTCAGCTGGAATGTCAGTTTGTGTGATGAGTGATGGAAGTAAGATAATGTATGGTGTAATCATAGAACAGAGGCCATAAGTCTCTAAGTATGAATGCCCCACAGAAAGAAGGCAGAAACCTGAACCAGGACGAGAGGTTCCACATCTGATGATCCTAGGGGACCAGAAGGACCTCTCCCAGTGATACCAGGAGATCTAGTCTACGTTCGAGTGTTCCGAAGGAAGTGGGATCAGCCGAGGAGAGAAGGACCCTACGAGGTGGCAATAGCCACAAACACGGCCGTCTAAGTGAAAGGAAGCAAGACGTGGTATCATCTAAACCACTGCACCCGAGTCCCGACGGAGAGAAGGACACAACCATACAGAGATGAGGACACAGAGGATGCTGATTCACCAGGCGGGACCCCGGAGGGAGCAGGAGCAGCGGAAACGATCAAAGCGCCGGGGAGGAATCAAGAAAATGGCAGACTAGATACAACGAGTGCATCAACTAAACGCACTCAGAAGAAGCACCAGGGGAAAAGAGCCTGAAAAGAAAAGAGACAAACAACCAAAGTTTCCTCCAGTATGGCCAGAAAGCCCAGAAGTGGGGGGGGGTAACATGTCTGCCACTCCTGATGATATACCTGTTGGGGCAGACCTCTTTGACAGAAGCCCTCTACAGTGGGACCCCGAGGTATCGCCTAAAGAATGGGAACATCTCTTCCCTGAAATGGACACCTTCCAGATGGAAGCCCAGTCCGGCCTGAGGAGGGAGCCGcaggggaagaaagaggaggagaggcctcTCAAGGAACAGAAGGAGAGACCCCACAAAGAGGAGGAAATGTCCAGCAAGCTGAAGAAAATGGGGATTTCCCCAAAATTGACTTTTCAGCTCTTGAATTGTAATACTACATTCCATTGTGTAACATAGAATGCAGTTTGGCACTAGGTAACACTAAAGGCAGACgtgaattaaataaaaatatgttggGAGAACATGAATGTGCAACATTAGAACTGAATTGAATGATCCTCAGAATGATGGGTTTActattgtaaaaataaaataaaaaggggaATAAATGAATGTTTTTACAGCTAtggagataatgggatggatgtgggaaacactatagttaattggagataatgggatggatgtgggaaacactatagttaattggagataatgggatggatgtgggaaacactatagttaattggagataatggga

Function

NR:

description
PREDICTED: uncharacterized protein LOC106578354

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052982.1 False 1736 mRNA 0.46 2 85257026 85263399
XR_005052983.1 False 2257 mRNA 0.42 2 85258313 85263399
TU859221 True 2674 TUCP 0.45 2 85256782 85264093

Neighbor

gene id symbol gene type direction distance location
xirp1 LOC106569803 coding upstream 22580 85208608 ~ 85234446 (+)
LOC110530843 LOC106569799 coding upstream 112649 85124558 ~ 85144377 (+)
LOC110531035 LOC106569797 coding upstream 149509 85002397 ~ 85107517 (+)
capsla capsl coding upstream 278924 84973597 ~ 84978102 (+)
LOC110531029 LOC106569826 coding upstream 286830 84966226 ~ 84970196 (+)
LOC118965573 NA coding downstream 25380 85288779 ~ 85290009 (+)
LOC118965574 NA coding downstream 52510 85315909 ~ 85317139 (+)
LOC110530835 LOC106569808 coding downstream 101334 85364733 ~ 85410339 (+)
LOC118965575 NA coding downstream 121506 85384905 ~ 85387277 (+)
hhatla hhatl coding downstream 201003 85464402 ~ 85505892 (+)
G756428 NA non-coding upstream 9114 85247286 ~ 85247912 (+)
G756427 NA non-coding upstream 10436 85246304 ~ 85246590 (+)
G756426 NA non-coding upstream 14083 85242712 ~ 85242943 (+)
G756425 NA non-coding upstream 19731 85237072 ~ 85237295 (+)
G756420 NA non-coding upstream 49201 85207567 ~ 85207825 (+)
G756440 NA non-coding downstream 61722 85325121 ~ 85325333 (+)
G756441 NA non-coding downstream 62181 85325580 ~ 85326369 (+)
G756442 NA non-coding downstream 64894 85328293 ~ 85328617 (+)
G756448 NA non-coding downstream 90631 85354030 ~ 85354275 (+)
G756454 NA non-coding downstream 96505 85359904 ~ 85360207 (+)
G756298 NA other upstream 319282 84936066 ~ 84937744 (+)
G756271 NA other upstream 378947 84876994 ~ 84878079 (+)
G756134 NA other upstream 695135 84558786 ~ 84561891 (+)
G755602 NA other upstream 948752 84303470 ~ 84308274 (+)
G755585 NA other upstream 994060 84261987 ~ 84262966 (+)
G757472 NA other downstream 688569 85951968 ~ 86028274 (+)
G757663 NA other downstream 854264 86117663 ~ 86117948 (+)
G757754 NA other downstream 966952 86230351 ~ 86231459 (+)
G757902 NA other downstream 1267754 86531153 ~ 86532379 (+)
G758045 NA other downstream 1371385 86634784 ~ 86635460 (+)

Expression


Co-expression Network