LOC110530835 (LOC106569808)


Basic Information

Item Value
gene id LOC110530835
gene name LOC106569808
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 85364733 ~ 85410339 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986605.1
ACTCGTTGACAACAGACGGGGAGGAGGAGTGGCATTTCAATCTTCCACAGGAAAAGTACCTGCCCTCAGAACTAACCTTACTTTGATCATGTTTTTGAGGATGTTATATTGTACTATTTGAATAAGAAAAACAATGATTTTAGGCTATCCGAGGCACGCGTAACTACGCACACGGCAGAGAGCAGGGGGGGGGGAGTGGCCTTCGGAGGATGGAGGACGGATAGAGAGGACGGACAACTTTCCCCGGTACTATCATAGGCACAAGATAATTTGACATAATGGAAACAAATGGGATAAACGACAAACACGGTATGGAGGGGGACACAGACCTCCAGTTCCTGCTGGTGGGTGGAGACCTTCTGAAGGTGAGATCTTCCTCCTGGAAGAAGACCCGCTTCTACAAGCTACAGGAGGACTGCCAGACCATGTGGCACGAGTCCAAGAAGACCTTCAAGTTCAAACAGACCTtcTCCATTAAGGACATCTCGGCGGTGCGTGCTGGCCGTCAATCGGAGGGTCTGAGGAAGAACACAGAGGAGCCGGTGGAGGGGAGATGTTTCTCCATAATCTTCAAGGGCAGAAGAAAGAACCTGGACCTGATGGCCAGCTCTGAGGAGGAGGCCAAGCAGTGGGTCACCAGCCTGGAGAAGATAATGTCCAACATGGAGAACCTTAACAGTCAGCAGAAGACTGAGCATTGGATCTTCAACTGCCTTAGGAAAGCAGACAAGAACAGTGACAACAAGCTGAGTCTGAAGGAGCTGAAGGACTTCCTGCACCAGATCAACATCGAGGTGGACGATCAATACGCAGAGAAGCTCTTCCAGGAGTGTGACCAGTCTAAGTGTGGCCACCTGGCTGGCGATGAGATAGAGCACTTCTACAGCCTTTTGACCCATCGCCAGGAGATAGACACCATCTACGGAGAATACGCTAAGACCATGGGCTTCATGAGCGCTGAAAATCTACTGGAGTTCCTGAttaaagagcagagagaggaggcaaCGCTAGCCGATGCACACAGACTCATCAACAAGTACGAATTGGATGATAAAGCCAAAGAGAAGCAGCTGATGACCCAAGATGGTTTCCTGATGTATCTCCACATGCCCGAGGGTCTGGTGCTGAATCCTACCCACAAGGCCGTGCACCAGGACATGAGCCAGCCCCTGAACCACTACTTCATCTCCTCGTCTCACAACACATACCTGATGGAAGACCAGCTCAAAGGGCCCAGCAGTACTGAGGCCTACGCCAGGGCTCTTATAAAGGGCTGTCGCTGTGTGGAGCTGGACTGCTGGGACGGGTCAGACGGAGAGCCAGTCATCTACCATGGATACACCCTCACTTCCAAGATCCTGTTTAAAGACACCATCAAAGCCATCAAGGAGTACGCCTTTAAGaCCTCGGACTACCCAGTGATCCTGTCCTTGGAGAATCACTGTAGTGTGGAGCAGCAGAGGGTCATGGCCCAGCACATGAGCTCCATCCTGGGCAGCGCTCTGCTCACCTCCCCCCTGGGGGACCAGATGCCCACAGGCTTCCCCTCCCCAGAGGAGCTGAAGGAGAGGTTCCTGGTCAAAGGGAAGAGGTTAACTAAACTGGAGGCCTGCTTTGGCCCTGAGGAGACAGCTGGGGATGATGGTAGCTtaactgaggaggaggaggatgacaaagaggaggaggaagaggagaagaagaaggccACGGAAGGTAAAAAACTGAAGCTGGCTAAGGAGCTGTCAGACATGGTGATCTACTGTAAGAGCGTCCATTTCAACGGATTCCAGGACGCTAAAGATAACCTGGGCTTCTACGAGATGTCCTCCTTCAAGGAAAGGAAAGCTATGGCGTTGGCTGAGGAGTCTGccaacAGCTACATCCATCACAATGTGGACAAGCTGAGTCGTATCTATCCAGCAGGCACCAGAACAGACTCATCCAACTATAACCCTGTACCCTTGTGGAACGCAGGCTGTCAGATCGTGTCCCTGAACTTCCAGACCTCCTGTAATGACATGGATGTGAACCAGGGTCGGTTCCTGACCAACGGGAAGACAGGATACGTCCTAAAGCCGGCCTACATGAGGGACCTGGGGTCAGAGTTTGACCCCATCACTCTGACCGCGGGACCGTGGCTGCAGCACAAGACGCTCCACCTCATGATCATCTCAGCCCAGCAGCTTCCAAAAGTGAACCAGAAAAAGACATCCATTGTGGACGCGCTGGTCAAAGTGGAGATACACGGGGTGCCTGCTGACACCGCAGATAAAGAGACGCCGTACATCGGGAACAATGGTTTCAACCCGATGTGGAATGAGAACTTTAAGTTTGATGTGTACGTGCCAGAGCTGGCCCTGGTCCGTTTTGTGGTCGAGGACCACGACTCTGTTACTGATAATGACTTCGTCGGACAGTTCACTGTACCATTCACCAGTTTACAGATGGGATACAGACATGTGCCGCTACTCAACAAGGAAGGAGACCCCCTTCCCTCAGCAGGACTGTTCGTACACATCATGATCATGGATGCCTAAAACAATCCCTGTCCGAATGTGCCATAATCACCACTGTGACTATCGTCCTGTCCCAAACAGACCTTCAGCCTTATACCACTACACCCTAGGGCATTAGAGTGGATCTGAAAGGATTGAATATGTGTAAGTGTCCTAGGGAGGAGGGGCTAGGGGTTGGTTTGGGATTGGGCCCGAGGAAGGCGGGGCTAGGGGTTGGTTTGGGATTTGGCCCGAGGTAGGCGGGGCCAGGGGTTGGTTTGGGACCGGGCCCGAGGGAGGCGGGGCTAGGGGTCGGTCTGGGCCCAGAGGACATCCTCCTCTGGATTTTTGAAAACTAATTATAATTAGCTTATCGAATAGGCAAGAAGATTATCTGTAACAGTAGAACTCCATTTGAGTTTTTTGTACTAGTATTTTTGGGAATTGTGACAAATGAACAAGTTTATCAAACTATCACATCACAGGGATTATACAAACCATTGTTTTTGTATACTcggtattattatattgttaaaaCACTTTTCATTTTGGAtcgttgtattttttaaatttttttgatGTCCACCATGTTGTATAATCAGTTTATTTAAATCAAGGTATTTAAATGATAATTTTAAGATAATTCATTGAATGAACAGTATTTGAAGCCAACAAACagacaatattttattttttacaaagaaGCACTTAGATGTTTCAGCTTTTATTGTTATGAATCAATATCCACGTTGTATACAGAGCATTCGggaaggattcagaccccttgacttttgccacattttgttacgttacagacttattctaaaattaatttaagaaatgttttccctcatcgatctacacacaataccccataatgacctcacaatac
>XM_036986604.1
TGAACTTTTACCCTTGAGTAGTACACGCCCTTTAAGAAATATCCTTTCAAAACGCCAAGCACGAATAGGATTCTCGCTGACAAGACACTTTTGTTTTGTAACAACGGATACTATTTGTAACAACGGATACTATTTGTAAGGAATTGAAGTCACAATGCAATGCATACAAAGGCAGCCCAAACGCACCAGATCCGAGGAATTACTTCATAATGAAAAAAGCAAGAAGGTTACGCGTTTAAATGTCAAACTGTTGGGTATGGAGGGGGACACAGACCTCCAGTTCCTGCTGGTGGGTGGAGACCTTCTGAAGGTGAGATCTTCCTCCTGGAAGAAGACCCGCTTCTACAAGCTACAGGAGGACTGCCAGACCATGTGGCACGAGTCCAAGAAGACCTTCAAGTTCAAACAGACCTtcTCCATTAAGGACATCTCGGCGGTGCGTGCTGGCCGTCAATCGGAGGGTCTGAGGAAGAACACAGAGGAGCCGGTGGAGGGGAGATGTTTCTCCATAATCTTCAAGGGCAGAAGAAAGAACCTGGACCTGATGGCCAGCTCTGAGGAGGAGGCCAAGCAGTGGGTCACCAGCCTGGAGAAGATAATGTCCAACATGGAGAACCTTAACAGTCAGCAGAAGACTGAGCATTGGATCTTCAACTGCCTTAGGAAAGCAGACAAGAACAGTGACAACAAGCTGAGTCTGAAGGAGCTGAAGGACTTCCTGCACCAGATCAACATCGAGGTGGACGATCAATACGCAGAGAAGCTCTTCCAGGAGTGTGACCAGTCTAAGTGTGGCCACCTGGCTGGCGATGAGATAGAGCACTTCTACAGCCTTTTGACCCATCGCCAGGAGATAGACACCATCTACGGAGAATACGCTAAGACCATGGGCTTCATGAGCGCTGAAAATCTACTGGAGTTCCTGAttaaagagcagagagaggaggcaaCGCTAGCCGATGCACACAGACTCATCAACAAGTACGAATTGGATGATAAAGCCAAAGAGAAGCAGCTGATGACCCAAGATGGTTTCCTGATGTATCTCCACATGCCCGAGGGTCTGGTGCTGAATCCTACCCACAAGGCCGTGCACCAGGACATGAGCCAGCCCCTGAACCACTACTTCATCTCCTCGTCTCACAACACATACCTGATGGAAGACCAGCTCAAAGGGCCCAGCAGTACTGAGGCCTACGCCAGGGCTCTTATAAAGGGCTGTCGCTGTGTGGAGCTGGACTGCTGGGACGGGTCAGACGGAGAGCCAGTCATCTACCATGGATACACCCTCACTTCCAAGATCCTGTTTAAAGACACCATCAAAGCCATCAAGGAGTACGCCTTTAAGaCCTCGGACTACCCAGTGATCCTGTCCTTGGAGAATCACTGTAGTGTGGAGCAGCAGAGGGTCATGGCCCAGCACATGAGCTCCATCCTGGGCAGCGCTCTGCTCACCTCCCCCCTGGGGGACCAGATGCCCACAGGCTTCCCCTCCCCAGAGGAGCTGAAGGAGAGGTTCCTGGTCAAAGGGAAGAGGTTAACTAAACTGGAGGCCTGCTTTGGCCCTGAGGAGACAGCTGGGGATGATGGTAGCTtaactgaggaggaggaggatgacaaagaggaggaggaagaggagaagaagaaggccACGGAAGGTAAAAAACTGAAGCTGGCTAAGGAGCTGTCAGACATGGTGATCTACTGTAAGAGCGTCCATTTCAACGGATTCCAGGACGCTAAAGATAACCTGGGCTTCTACGAGATGTCCTCCTTCAAGGAAAGGAAAGCTATGGCGTTGGCTGAGGAGTCTGccaacAGCTACATCCATCACAATGTGGACAAGCTGAGTCGTATCTATCCAGCAGGCACCAGAACAGACTCATCCAACTATAACCCTGTACCCTTGTGGAACGCAGGCTGTCAGATCGTGTCCCTGAACTTCCAGACCTCCTGTAATGACATGGATGTGAACCAGGGTCGGTTCCTGACCAACGGGAAGACAGGATACGTCCTAAAGCCGGCCTACATGAGGGACCTGGGGTCAGAGTTTGACCCCATCACTCTGACCGCGGGACCGTGGCTGCAGCACAAGACGCTCCACCTCATGATCATCTCAGCCCAGCAGCTTCCAAAAGTGAACCAGAAAAAGACATCCATTGTGGACGCGCTGGTCAAAGTGGAGATACACGGGGTGCCTGCTGACACCGCAGATAAAGAGACGCCGTACATCGGGAACAATGGTTTCAACCCGATGTGGAATGAGAACTTTAAGTTTGATGTGTACGTGCCAGAGCTGGCCCTGGTCCGTTTTGTGGTCGAGGACCACGACTCTGTTACTGATAATGACTTCGTCGGACAGTTCACTGTACCATTCACCAGTTTACAGATGGGATACAGACATGTGCCGCTACTCAACAAGGAAGGAGACCCCCTTCCCTCAGCAGGACTGTTCGTACACATCATGATCATGGATGCCTAAAACAATCCCTGTCCGAATGTGCCATAATCACCACTGTGACTATCGTCCTGTCCCAAACAGACCTTCAGCCTTATACCACTACACCCTAGGGCATTAGAGTGGATCTGAAAGGATTGAATATGTGTAAGTGTCCTAGGGAGGAGGGGCTAGGGGTTGGTTTGGGATTGGGCCCGAGGAAGGCGGGGCTAGGGGTTGGTTTGGGATTTGGCCCGAGGTAGGCGGGGCCAGGGGTTGGTTTGGGACCGGGCCCGAGGGAGGCGGGGCTAGGGGTCGGTCTGGGCCCAGAGGACATCCTCCTCTGGATTTTTGAAAACTAATTATAATTAGCTTATCGAATAGGCAAGAAGATTATCTGTAACAGTAGAACTCCATTTGAGTTTTTTGTACTAGTATTTTTGGGAATTGTGACAAATGAACAAGTTTATCAAACTATCACATCACAGGGATTATACAAACCATTGTTTTTGTATACTcggtattattatattgttaaaaCACTTTTCATTTTGGAtcgttgtattttttaaatttttttgatGTCCACCATGTTGTATAATCAGTTTATTTAAATCAAGGTATTTAAATGATAATTTTAAGATAATTCATTGAATGAACAGTATTTGAAGCCAACAAACagacaatattttattttttacaaagaaGCACTTAGATGTTTCAGCTTTTATTGTTATGAATCAATATCCACGTTGTATACAGAGCATTCGggaaggattcagaccccttgacttttgccacattttgttacgttacagacttattctaaaattaatttaagaaatgttttccctcatcgatctacacacaataccccataatgacctcacaatac

Function

NR:

description
PREDICTED: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1-like isoform X1

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005509 calcium ion binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG:

id description
K05857 PLCD; phosphatidylinositol phospholipase C, delta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986605.1 False 3387 mRNA 0.49 16 85364733 85410339
XM_036986604.1 True 3332 mRNA 0.48 16 85369551 85410339

Neighbor

gene id symbol gene type direction distance location
LOC118965574 NA coding upstream 47594 85315909 ~ 85317139 (+)
LOC118965573 NA coding upstream 74724 85288779 ~ 85290009 (+)
LOC118965572 NA coding upstream 101334 85256782 ~ 85264093 (+)
xirp1 LOC106569803 coding upstream 130287 85208608 ~ 85234446 (+)
LOC110530843 LOC106569799 coding upstream 220356 85124558 ~ 85144377 (+)
hhatla hhatl coding downstream 54063 85464402 ~ 85505892 (+)
klhl40a klhl40 coding downstream 101043 85511382 ~ 85525239 (+)
vipr1a LOC106569811 coding downstream 121820 85532159 ~ 85638054 (+)
LOC110530830 LOC106583328 coding downstream 207265 85617604 ~ 85618327 (+)
LOC110530829 mul1b coding downstream 248261 85658600 ~ 85663057 (+)
G756454 NA non-coding upstream 4526 85359904 ~ 85360207 (+)
G756448 NA non-coding upstream 10458 85354030 ~ 85354275 (+)
G756442 NA non-coding upstream 36116 85328293 ~ 85328617 (+)
G756441 NA non-coding upstream 38364 85325580 ~ 85326369 (+)
G756440 NA non-coding upstream 39400 85325121 ~ 85325333 (+)
G756404 NA non-coding downstream 3096 85413435 ~ 85414616 (+)
G756505 NA non-coding downstream 73258 85483597 ~ 85488866 (+)
G756506 NA non-coding downstream 78911 85489250 ~ 85489859 (+)
G756520 NA non-coding downstream 125090 85535429 ~ 85536085 (+)
G756532 NA non-coding downstream 143085 85553424 ~ 85607980 (+)
G756298 NA other upstream 426989 84936066 ~ 84937744 (+)
G756271 NA other upstream 486654 84876994 ~ 84878079 (+)
G756134 NA other upstream 802842 84558786 ~ 84561891 (+)
G755602 NA other upstream 1056459 84303470 ~ 84308274 (+)
G757472 NA other downstream 541629 85951968 ~ 86028274 (+)
G757663 NA other downstream 707324 86117663 ~ 86117948 (+)
G757754 NA other downstream 820012 86230351 ~ 86231459 (+)
G757902 NA other downstream 1120814 86531153 ~ 86532379 (+)
G758045 NA other downstream 1224445 86634784 ~ 86635460 (+)

Expression


Co-expression Network