XLOC_025914


Basic Information

Item Value
gene id XLOC_025914
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 62424335 ~ 62542931 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00052871
ATCTGGTCTGAATGGCTTTTCCAAACCAGCGAGAGGCTAACCAAACAATACAAGACTTGTTACCGGTGAAACAAACCCAGTGTTCATTGTGCAGAGCCAAACATCAAACAGCGGAGCAGAACACTGACCTTACAGAGGCCGAGACGGCAGCAATGAGTGTGCAGTATTTCACTCAGTAGTCAGCAGCACTCGACTCTCACCACAGTGAAGGTGTGTGTTTATCCGGATAATAAAGCCCCTGCAGAAGAGTAAAGAGTGCTTCTAGACTACATGTCCCATGATGCAGTGCTGTGGGGAGTGTGTCATGTGACGATCGTGTGCGTGAGAGTCTGCTGtgggtgtgtgcgcgcgcgctccACTACTGCTGACACATTACACTCAGAGCAGCGGAGGAGTCGCTCAGTGTAGTGcagcgcgcgcgcgtgtgtgcggGTATCCAGATGGATATTATGGGATACACGTGCTTCAGCACTCTCTGGATATCACATGAGGATGATGCCGACTGCGCTCTATGGAGATGAGCAGGACTCAGTCTCGTGGATTATTTCACACACGCGGATTAACCTCACCATCACCTCCACATGTGGATTACACTCACCCCGCAGCCGGAGGACACACGGATGATCTGGTGTGATGGAGGATCTCTGGCTGAACACAGGTGAGTCTAGAGgtggtgcagtgtgtgtgtgagagctgtGGACACTGACGGACACTGAGGATTGATCAGAGATATCTGGAGGAGCTCACTGGACGTGTGACTGatgtgtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttattgtgtacTGAAGCTGTATCTCTGACTGATGTACACTGAACACatcttaataaaacacatcaactCTCCATGAGTGAGTTTGTCACATCTGTAATGATGGAAACCCCcagattagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccagacaGAGATGGATTACATATTGTGTTCAGTCAAATGGTTCTGATTCCCTCAGTGCTGCTTCCTACTGAAGTGTTGTTCAGTGTCAGCAggagcagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccactcgGGCTGCTTCTCCTCCTGGAAGCTGAGCGGAGTGTTTCTGCACACTGGGCTGAAGTGCAGATATGTTGGCAGTGGAATGTCC
>TCONS_00052872
ATCTGGTCTGAATGGCTTTTCCAAACCAGCGAGAGGCTAACCAAACAATACAAGACTTGTTACCGGTGAAACAAACCCAGTGTTCATTGTGCAGAGCCAAACATCAAACAGCGGAGCAGAACACTGACCTTACAGAGGCCGAGACGGCAGCAATGAGTGTGCAGTATTTCACTCAGTAGTCAGCAGCACTCGACTCTCACCACAGTGAAGGTGTGTGTTTATCCGGATAATAAAGCCCCTGCAGAAGAGTAAAGAGTGCTTCTAGACTACATGTCCCATGATGCAGTGCTGTGGGGAGTGTGTCATGTGACGATCGTGTGCGTGAGAGTCTGCTGtgggtgtgtgcgcgcgcgctccACTACTGCTGACACATTACACTCAGAGCAGCGGAGGAGTCGCTCAGTGTAGTGcagcgcgcgcgcgtgtgtgcggGTATCCAGATGGATATTATGGGATACACGTGCTTCAGCACTCTCTGGATATCACATGAGGATGATGCCGACTGCGCTCTATGGAGATGAGCAGGACTCAGTCTCGTGGATTATTTCACACACGCGGATTAACCTCACCATCACCTCCACATGTGGATTACACTCACCCCGCAGCCGGAGGACACACGGATGATCTGGTGTGATGGAGGATCTCTGGCTGAACACAGGTGAGTCTAGAGGGCCGGCGGCGCGGCGCTGTCATGATGTCATCCTCCTGTGCAGACAAGAATCTGCGAGACGACACACACCGGTTACAGAGGAGAcgaagaggaggagaaggagagGAGGAAGAACACCAGCAGAGGAAACACATACAGGAGAGATAAACCTGTGACCGACCAGCTGATAACAGTCTAGCCTGAGCTGGAGaatcactgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggagctGCAGGTAGATTAACTCAGGCATTAGCAGTAAGCTGTGCACATGGCAGCGGTGTCAGCCtgtgacagacacacacacactcacacacacacacccacacacaacatccacacatacagagacacacacatctataaaaatacacacacacagagacacacaacacaacaacat
>TCONS_00052873
ACCCAGTGTTCATTGTGCAGAGCCAAACATCAAACAGCGGAGCAGAACACTGACCTTACAGAGGCCGAGACGGCAGCAATGAGGTGTGATGGAGGATCTCTGGCTGAACACAGGTGAGTCTAGAGgtggtgcagtgtgtgtgtgagagctgtGGACACTGACGGACACTGAGGATTGATCAGAGATATCTGGAGGAGCTCACTGGACGTGTGACTGatgtgtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttattgtgtacTGAAGCTGTATCTCTGACTGATGTACACTGAACACatcttaataaaacacatcaactCTCCATGAGTGAGTTTGTCACATCTGTAATGATGGAAACCCCcagattagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccagacaGAGATGGATTACATATTGTGTTCAGTCAAATGGTTCTGATTCCCTCAGTGCTGCTTCCTACTGAAGTGTTGTTCAGTGTCAGCAggagcagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccactcgGGCTGCTTCTCCTCCTGGAAGCTGAGCGGAGTGTTTCTGCACACTGGGCTGAAGTGCAGATATGTTGGCAGTGGAATGTCC
>TCONS_00052874
CTAGACTACATGTCCCATGATGCAGTGCTGTGGGGAGTGTGTCATGTGACGATCGTGTGCGTGAGAGTCTGCTGtgggtgtgtgcgcgcgcgctccACTACTGCTGACACATTACACTCAGAGCAGCGGAGGAGTCGCTCAGTGTAGTGcagcgcgcgcgcgtgtgtgcggGTATCCAGATGGATATTATGGGATACACGTGCTTCAGCACTCTCTGGATATCACATGAGGATGATGCCGACTGCGCTCTATGGAGATGAGCAGGACTCAGTCTCGTGGATTATTTCACACACGCGGATTAACCTCACCATCACCTCCACATGTGGATTACACTCACCCCGCAGCCGGAGGACACACGGATGATCTGGTGTGATGGAGGATCTCTGGCTGAACACAGgtggtgcagtgtgtgtgtgagagctgtGGACACTGACGGACACTGAGGATTGATCAGAGATATCTGGAGGAGCTCACTGGACGTGTGACTGatgtgtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttattgtgtacTGAAGCTGTATCTCTGACTGATGTACACTGAACACatcttaataaaacacatcaactCTCCATGAGTGAGTTTGTCACATCTGTAATGATGGAAACCCCcagattagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccagacaGAGATGGATTACATATTGTGTTCAGTCAAATGGTTCTGATTCCCTCAGTGCTGCTTCCTACTGAAGTGTTGTTCAGTGTCAGCAggagcagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccactcgGGCTGCTTCTCCTCCTGGAAGCTGAGCGGAGTGTTTCTGCACACTGGGCTGAAGTGCAGATATGTTGGCAGTGGAATGTCC
>TCONS_00052875
GTGTGTCATGTGACGATCGTGTGCGTGAGAGTCTGCTGtgggtgtgtgcgcgcgcgctccACTACTGCTGACACATTACACTCAGAGCAGCGGAGGAGTCGCTCAGTGTAGTGcagcgcgcgcgcgtgtgtgcggGTATCCAGATGGATATTATGGGATACACGTGCTTCAGCACTCTCTGGATATCACATGAGGATGATGCCGACTGCGCTCTATGGAGATGAGCAGGACTCAGTCTCGTGGATTATTTCACACACGCGGATTAACCTCACCATCACCTCCACATGTGGATTACACTCACCCCGCAGCCGGAGGACACACGGATGATCTGGTGTGATGGAGGATCTCTGGCTGAACACAGGGCCGGCGGCGCGGCGCTGTCATGATGTCATCCTCCTGTGCAGACAAGAATCTGCGAGACGACACACACCGGTTACAGAGGAGAcgaagaggaggagaaggagagGAGGAAGAACACCAGCAGAGGAAACACATACAGGAGAGATAAACCTGTGACCGACCAGCTGATAACAGTCTAGCCTGAGCTGGAGaatcactgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggagctGCAGGTAGATTAACTCAGGCATTAGCAGTAAGCTGTGCACATGGCAGCGGTGTCAGCCtgtgacagacacacacacactcacacacacacacccacacacaacatccacacatacagagacacacacatctataaaaatacacacacacagagacacacaacacaacaacat
>TCONS_00052876
GACGATCGTGTGCGTGAGAGTCTGCTGtgggtgtgtgcgcgcgcgctccACTACTGCTGACACATTACACTCAGAGCAGCGGAGGAGTCGCTCAGTGTAGTGcagcgcgcgcgcgtgtgtgcggGTATCCAGATGGATATTATGGGATACACGTGCTTCAGCACTCTCTGGATATCACATGAGGATGATGCCGACTGCGCTCTATGGAGATGAGCAGGACTCAGTCTCGTGGATTATTTCACACACGCGGATTAACCTCACCATCACCTCCACATGTGGATTACACTCACCCCGCAGCCGGAGGACACACGGATGATCTGGTGTGATGGAGGATCTCTGGCTGAACACAGGTGAGTCTAGAGATGTTCATTGATCGGTGGTTCAGGAGCAGAAGATGAA
>TCONS_00052877
cgcgcgcgctccACTACTGCTGACACATTACACTCAGAGCAGCGGAGGAGTCGCTCAGTGTAGTGcagcgcgcgcgcgtgtgtgcggGTATCCAGATGGATATTATGGGATACACGTGCTTCAGCACTCTCTGGATATCACATGAGGATGATGCCGACTGCGCTCTATGGAGATGAGCAGGACTCAGTCTCGTGGATTATTTCACACACGCGGATTAACCTCACCATCACCTCCACATGTGGATTACACTCACCCCGCAGCCGGAGGACACACGGATGATCTGGGCCGGCGGCGCGGCGCTGTCATGATGTCATCCTCCTGTGCAGACAAGAATCTGCGAGACGACACACACCGGTTACAGAGGAGAcgaagaggaggagaaggagagGAGGAAGAACACCAGCAGAGGAAACACATACAGGAGAGATAAACCTGTGACCGACCAGCTGATAACAGTCTAGCCTGAGCTGGAGaatcactgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggagctGCAGGTAGATTAACTCAGGCATTAGCAGTAAGCTGTGCACATGGCAGCGGTGTCAGCCtgtgacagacacacacacactcacacacacacacccacacacaacatccacacatacagagacacacacatctataaaaatacacacacacagagacacacaacacaacaacat
>TCONS_00052878
CTCAGAGCAGCGGAGGAGTCGCTCAGTGTAGTGcagcgcgcgcgcgtgtgtgcggGTATCCAGATGGATATTATGGGATACACGTGCTTCAGCACTCTCTGGATATCACATGAGGATGATGCCGACTGCGCTCTATGGAGATGAGCAGGACTCAGTCTCGTGGATTATTTCACACACGCGGATTAACCTCACCATCACCTCCACATGTGGATTACACTCACCCCGCAGCCGGAGGACACACGGATGATCTGgaccATTTCAAGCTGATGTACGTCCTAATAGAGAAGAAAAGCACAATCTTAATCTGTTTCTTGC
>TCONS_00050782
CAGCGGAGGAGTCGCTCAGTGTAGTGcagcgcgcgcgcgtgtgtgcggGTATCCAGATGGATATTATGGGATACACGTGCTTCAGCACTCTCTGGATATCACATGAGGATGATGCCGACTGCGCTCTATGGAGATGAGCAGGACTCAGTCTCGTGGATTATTTCACACACGCGGATTAACCTCACCATCACCTCCACATGTGGATTACACTCACCCCGCAGCCGGAGGACACACGGATGATCTGttaaTCATCTGGACCAGCGTTTGCTTTACTGCGACAGCGGCTGGACCGGCCGGTTTGCTCTAATCCAGGATATAAACGCTCCTATAACCAGAAGACACGGAAACTTGGCAGAACACACACTCTCAGTTGGGCTCCGGCCAGATCTGATGCTGACGCTGGCTGAGCGTCCATACACACATCAGGAGTCGCTCGATACAGCAGCGTTCACATCCAATGACAGAGTGAAGATCCATCAGCTCCTGctgaacatgcacacacacatcac
>TCONS_00052879
CGGAGGAGTCGCTCAGTGTAGTGcagcgcgcgcgcgtgtgtgcggGTATCCAGATGGATATTATGGGATACACGTGCTTCAGCACTCTCTGGATATCACATGAGGATGATGCCGACTGCGCTCTATGGAGATGAGCAGGACTCAGTCTCGTGGATTATTTCACACACGCGGATTAACCTCACCATCACCTCCACATGTGGATTACACTCACCCCGCAGCCGGAGGACACACGGATGATCTGgtggtgcagtgtgtgtgtgagagctgtGGACACTGACGGACACTGAGGATTGATCAGAGATATCTGGAGGAGCTCACTGGACGTGTGACTGatgtgtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttattgtgtacTGAAGCTGTATCTCTGACTGATGTACACTGAACACatcttaataaaacacatcaactCTCCATGAGTGAGTTTGTCACATCTGTAATGATGGAAACCCCcagattagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgccagacaGAGATGGATTACATATTGTGTTCAGTCAAATGGTTCTGATTCCCTCAGTGCTGCTTCCTACTGAAGTGTTGTTCAGTGTCAGCAggagcagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccactcgGGCTGCTTCTCCTCCTGGAAGCTGAGCGGAGTGTTTCTGCACACTGGGCTGAAGTGCAGATATGTTGGCAGTGGAATGTCC
>TCONS_00052398
CAGTGTAGTGcagcgcgcgcgcgtgtgtgcggGTATCCAGATGGATATTATGGGATACACGTGCTTCAGCACTCTCTGGATATCACATGAGGATGATGCCGACTGCGCTCTATGGAGATGAGCAGGACTCAGTCTCGTGGATTATTTCACACACGCGGATTAACCTCACCATCACCTCCACATGTGGATTACACTCACCCCGCAGCCGGAGGACACACGGATGATCTGGTGTGATGGAGGATCTCTGGCTGAACACAGGTGAGTCTAGAGgtggtgcagtgtgtgtgtgagagctgtGGACACTGACGGACACTGAGGATTGATCAGAGATATCTGGAGGAGCTCACTGGACGTGTGACTGatgtgtcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttattgtgtacTGAAGCTGTATCTCTGACTGATGTACACTGAACACatcttaataaaacacatcaactCTC

Function

GO:

id name namespace
GO:0044092 negative regulation of molecular function biological_process
GO:0043086 negative regulation of catalytic activity biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0000315 organellar large ribosomal subunit cellular_component
GO:0030132 clathrin coat of coated pit cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000097714

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00052871 False 1188 lncRNA 0.50 4 62424335 62489117
TCONS_00052872 False 1133 lncRNA 0.52 4 62424335 62497938
TCONS_00052873 False 643 lncRNA 0.49 3 62424409 62489117
TCONS_00052874 False 915 lncRNA 0.51 3 62432778 62489117
TCONS_00052875 False 824 lncRNA 0.53 3 62432814 62497938
TCONS_00052876 False 399 lncRNA 0.54 3 62432825 62542931
TCONS_00052877 False 746 lncRNA 0.53 2 62432862 62497938
TCONS_00052878 False 315 lncRNA 0.51 2 62432894 62532887
TCONS_00050782 False 509 lncRNA 0.53 2 62432901 62445887
TCONS_00052879 False 759 lncRNA 0.50 2 62432904 62489117
TCONS_00052398 True 476 lncRNA 0.51 3 62432917 62488805

Neighbor

gene id symbol gene type direction distance location
XLOC_025913 NA coding upstream 39642 62368724 ~ 62384693 (+)
XLOC_025912 iqck coding upstream 63507 62353650 ~ 62360828 (+)
XLOC_025911 BX470259.1 coding upstream 78207 62339264 ~ 62346128 (+)
XLOC_025910 zgc:173575 coding upstream 94623 62327332 ~ 62329712 (+)
XLOC_025909 znf1124 coding upstream 99536 62317990 ~ 62324799 (+)
XLOC_025429 BX649540.1 misc upstream 32175299 30248739 ~ 30249036 (+)
XLOC_025908 NA non-coding upstream 117786 62304042 ~ 62306549 (+)
XLOC_025904 NA non-coding upstream 173761 62207834 ~ 62250574 (+)
XLOC_025898 NA non-coding upstream 362497 62054694 ~ 62061838 (+)
XLOC_025890 NA non-coding upstream 1040143 61357205 ~ 61384192 (+)

Expression


Co-expression Network