LOC110517235 (LOC106592571)


Basic Information

Item Value
gene id LOC110517235
gene name LOC106592571
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 86920601 ~ 86953377 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986640.1
ACAAAGGGGAGTGACGCAGATGTTATAGACGCCCCACATTTCTATTAAATCTACAGGAATTCAAATGTCTAATCTGTAAATGTCTAATTTCTTATTTTACGAGAATAAATAGTGATTTAaaaaagagacacacagactgCTCTGCTTGTGACATGCTAACGCCGTTCCTGTTGGAGGTTGCTGCTGTCCACCGTGAAGATTAGATGGGATAGCCAACACGAGATATGCCGCAACCCAAATCACGAAAAATCGCCATTCTCGGGTACAGATCCGTAGGAAAGTCCTCGCTAACGattcagtttgtggaaggccaGTTTGTCGACTCCTATGATCCAACGATAGAAAACACGTTTACCAAGATGATCACGATAAACGGACAAGAATACCACCTGCAGTTGGTAGACACAGCGGGACAGGATGAATACTCTATATTTCCTCAGACCTATTCCATAGATATCAATGGATACATCTTGGTCTACTCTGTCACGTCTAATAAAAGTTTTGAAGTAGTTCAGGTTATCCATGAAAAACTTCTGGATATGGTGGGGAAAGCTCAAGTTCCTATTATGTTGGTGGGAAATAAGAACGACCTGCACATGGAAAGGGTGATCAGCTGTGAGGAAGGGAAGTCACTAGCAGAATCGTGGAACGCTGCCTTCATGGAATCCTCAGCTAAAGAGAACCAGacggCGGTGGAGGTGTTCAAGAGGATGATCCTGGAGGCGGAGAAGCTGGAAGGCGGCGTCCAACCAGGGAAGACTTCCTGCTCCTTGATGTAGAGCTGCTGATCAATCAGAACAGAGAACCGAACACTACACTGGGATATCCAGATACTTGAAGGCTTCCTGCCAGTACAACTACTACTCTTCcaactgtcttcaactgtcttcaactgtcttcaactgtcttccaactgtcttcaactgtcttcaactgtcttcaactgtcttccaactgtcttcaactgtcttcCAACTGTCTTCcaactgtcttcaactgtcttcaactgtcttcaactgtcttcaactgtcttcaactgtcttcaactgtcttcaactgtcttcaactGTCAACTCACCAACAGTTTATTTTTTCAGTATTTCTGTTTGTCATGAAAGGGTGAGTGGCTGTCATACTGTACATTTCCCACAATCCACTTCTCGTCTGTTCTGTGCTCAGCCCTGATGCGAAACTGAGAGCCACGTCCAGAAATAACCCCTAGACCCTCCacccttacaccccccccccccccccttagtcACTTCTCTTAGCCCCTAGCAGACAAGGGGTGGGGTTTAGGGTCTGTTTCTGTAACCTTGTTTGACCATCCCGATCTTGCAAAAGTACAGCGGTCAGGATGGTGTATCAGACTACTGTTTCTCATAAAGACGTATCAGAAACTATGTCTGGCTTCTCACATGGGGCTGCACAGGTGTCCGTTCTGGCTTTATGGCGGACGGGTGACTATGGAAGAATCAGAGATGTTCAACCTCCTCGTATTAGAGATGCTATGAAGAACGAACATTCCCTTCTATTGAattgtgttttttaaaatgttttttatttaaacaATTGATTGTTTTATCTTCTTTTCTCTGTCCATGTAATTAGTCCGCTGTgtcaccaggatggagctagcatgccatggTTGTTTTTACCCATActaagctgttcattttagtgtATTGTTTCAAAGGGAAACAAACACTCATTAGGATCAGGTGTGGTTAATTAGTGGGCGTGGCCAACACACCTGACCACGCTTAAAAAAATACAGCATAGAGAGTTGTCTTGATGCAGAGAACGGTTTTTAAATCACTTTAGTAACGTTGAGAGAATGTTTTCTGTGGTTTTTATGGAACTTTTGGAACAATTTgaaaacatgactttaaataaaaccacgaggaaacctgtaggaaacgtcaTGCTgtagtactgaaattcccacagaagaacttTTCTTAACGTTCACTGAACTATTTTAAAATGTTAAACCAGTTGTAGAACGtttctagaacattaccaaaattgaaattaaatgtaaccatgtttgacattttaggaaacgttctgttaaagtaatgaaataccgaGAAAATATCATTTTCGAAAGTTACATAattgtgctgagaatgttccaaagccaatcAACTACCCTGCACCGTTCCCAGAACGTTGTgagaaggttgtatgcaaaataaccataggacaaccgcACTCTCACCAAGCACTAAGAAACGTTCTCAGAACGTCGTGTGCTTGCTGGGCTCTGTCATTGTTGTCATTGTCAATCCGTACATCACTAAAACTTTTTTATAGGAAATCTTCCAATAAACTTCAGGGAGAATCCTAACTTCCTTAAGTCAAATATTCAGCtcgtctcccattgacatcaacgCATGAATAAGTGAACATTTCATTTATGTGTAAGTTAAGATTTGTTCTTTAGTCATATCTGATGCATTAGTAGCTGTTCATCTGTCCCTCTAGCTCTTTCTTTATCTACTTTATTTTCCCACATCGTTGTCAGTCAGATGtgtctcccccccaccccccaccccatagCTGTTTTTGTCACCAGACAAAATATCTGCATCGTATTTTCTAACGTTGTACAAAAGTGTTTTTTGATTGTAATCATTAAATGAAAAATGGATTATTTCA
>XR_005052993.1
ACAAAGGGGAGTGACGCAGATGTTATAGACGCCCCACATTTCTATTAAATCTACAGGAATTCAAATGTCTAATCTGTAAATGTCTAATTTCTTATTTTACGAGAATAAATAGTGATTTAaaaaagagacacacagactgCTCTGCTTGTGACATGCTAACGCCGTTCCTGTTGGAGGTTGCTGCTGTCCACCGTGAAGATTAGATGGGATAGCCAACACGAGATATGCCGCAACCCAAATCACGAAAAATCGCCATTCTCGGGTACAGATCCGTAGGAAAGTCCTCGCTAACGattcagtttgtggaaggccaGTTTGTCGACTCCTATGATCCAACGATAGAAAACACGTTTACCAAGATGATCACGATAAACGGACAAGAATACCACCTGCAGTTGGTAGACACAGCGGGACAGGATGAATACTCTATATTTCCTCAGACCTATTCCATAGATATCAATGGATACATCTTGGTCTACTCTGTCACGTCTAATAAAAGTTTTGAAGTAGTTCAGGTTATCCATGAAAAACTTCTGGATATGGTGGGGAAAGCTCAAGTTCCTATTATGTTGGTGGGAAATAAGAACGACCTGCACATGGAAAGGGTGATCAGCTGTGAGGAAGGGAAGTCACTAGCAGAATCGTGGAACGCTGCCTTCATGGAATCCTCAGCTAAAGAGAACCAGacggCGGTGGAGGTGTTCAAGAGGATGATCCTGGAGGCGGAGAAGCTGGAAGGCGGCGTCCAACCAGGGAAGACTTCCTGCTCCTTGATGTAGAGCTGCTGATCAATCAGAACAGAGAACCGAACACTACACTGGGATATCCAGATACTTGAAGGCTTCCTGCCAGTACAACTACTACTCTTCcaactgtcttcaactgtcttcaactGTCAACTCACCAACAGTTTATTTTTTCAGTATTTCTGTTTGTCATGAAAGGGTGAGTGGCTGTCATACTGTACATTTCCCACAATCCACTTCTCGTCTGTTCTGTGCTCAGCCCTGATGCGAAACTGAGAGCCACGTCCAGAAATAACCCCTAGACCCTCCacccttacaccccccccccccccccttagtcACTTCTCTTAGCCCCTAGCAGACAAGGGGTGGGGTTTAGGGTCTGTTTCTGTAACCTTGTTTGACCATCCCGATCTTGCAAAAGTACAGCGGTCAGGATGGTGTATCAGACTACTGTTTCTCATAAAGACGTATCAGAAACTATGTCTGGCTTCTCACATGGGGCTGCACAGGTGTCCGTTCTGGCTTTATGGCGGACGGGTGACTATGGAAGAATCAGAGATGTTCAACCTCCTCGTATTAGAGATGCTATGAAGAACGAACATTCCCTTCTATTGAattgtgttttttaaaatgttttttatttaaacaATTGATTGTTTTATCTTCTTTTCTCTGTCCATGTAATTAGTCCGCTGTgtcaccaggatggagctagcatgccatggTTGTTTTTACCCATActaagctgttcattttagtgtATTGTTTCAAAGGGAAACAAACACTCATTAGGATCAGGTGTGGTTAATTAGTGGGCGTGGCCAACACACCTGACCACGCTTAAAAAAATACAGCATAGAGAGTTGTCTTGATGCAGAGAACGGTTTTTAAATCACTTTAGTAACGTTGAGAGAATGTTTTCTGTGGTTTTTATGGAACTTTTGGAACAATTTgaaaacatgactttaaataaaaccacgaggaaacctgtaggaaacgtcaTGCTgtagtactgaaattcccacagaagaacttTTCTTAACGTTCACTGAACTATTTTAAAATGTTAAACCAGTTGTAGAACGtttctagaacattaccaaaattgaaattaaatgtaaccatgtttgacattttaggaaacgttctgttaaagtaatgaaataccgaGAAAATATCATTTTCGAAAGTTACATAattgtgctgagaatgttccaaagccaatcAACTACCCTGCACCGTTCCCAGAACGTTGTgagaaggttgtatgcaaaataaccataggacaaccgcACTCTCACCAAGCACTAAGAAACGTTCTCAGAACGTCGTGTGCTTGCTGGGCTCTGTCATTGTTGTCATTGTCAATCCGTACATCACTAAAACTTTTTTATAGGAAATCTTCCAATAAACTTCAGGGAGAATCCTAACTTCCTTAAGTCAAATATTCAGCtcgtctcccattgacatcaacgCATGAATAAGTGAACATTTCATTTATGTGTAAGTTAAGATTTGTTCTTTAGTCATATCTGATGCATTAGTAGCTGTTCATCTGTCCCTCTAGCTCTTTCTTTATCTACTTTATTTTCCCACATCGTTGTCAGTCAGATGtgtctcccccccaccccccaccccatagCTGTTTTTGTCACCAGACAAAATATCTGCATCGTATTTTCTAACGTTGTACAAAAGTGTTTTTTGATTGTAATCATTAAATGAAAAATGGATTATTTCA

Function

NR:

description
PREDICTED: GTP-binding protein Rheb-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07208 RHEB; Ras homolog enriched in brain

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986640.1 False 2664 mRNA 0.41 8 86920601 86953377
XR_005052993.1 True 2490 mRNA 0.41 9 86920601 86953377
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110529151 LOC106569758 coding downstream 16646 86896684 ~ 86903955 (-)
LOC110531045 LOC106569759 coding downstream 27768 86873956 ~ 86892833 (-)
LOC118965578 NA coding downstream 46800 86868307 ~ 86873801 (-)
LOC110530853 LOC106569760 coding downstream 63143 86775438 ~ 86857458 (-)
abca4b LOC103146343 coding downstream 156815 86630136 ~ 86763786 (-)
LOC110517127 vapa coding upstream 840747 87794124 ~ 87824786 (-)
LOC110530881 LOC106569740 coding upstream 881297 87834674 ~ 87846312 (-)
ralbp1 ralbp1 coding upstream 896494 87849871 ~ 87876745 (-)
LOC110530873 LOC106596679 coding upstream 937849 87891226 ~ 87934005 (-)
LOC110530858 NA coding upstream 987431 87940808 ~ 87943613 (-)
G758538 NA non-coding downstream 120 86912253 ~ 86920481 (-)
G758552 NA non-coding downstream 20282 86900067 ~ 86900319 (-)
G758550 NA non-coding downstream 24038 86895922 ~ 86896563 (-)
G758227 NA non-coding downstream 53760 86866616 ~ 86866841 (-)
G758580 NA non-coding upstream 29399 86982776 ~ 86983243 (-)
G758600 NA non-coding upstream 77880 87031257 ~ 87031562 (-)
G758610 NA non-coding upstream 96742 87050119 ~ 87050340 (-)
G758625 NA non-coding upstream 129536 87082913 ~ 87129973 (-)
G758629 NA non-coding upstream 135324 87088701 ~ 87089353 (-)
G757788 NA other downstream 688409 86230374 ~ 86308150 (-)
G757422 NA other downstream 1056714 85863011 ~ 85863887 (-)
G757292 LOC106569817 other downstream 1165363 85703130 ~ 85756434 (-)
G756981 NA other downstream 1505899 85413431 ~ 85414702 (-)
G757086 NA other downstream 1517074 85402618 ~ 85404005 (-)
G759421 NA other upstream 1477827 88430998 ~ 88443468 (-)
G759982 NA other upstream 1582263 88535640 ~ 88536047 (-)
G759998 NA other upstream 1710227 88638913 ~ 88667229 (-)
G760051 NA other upstream 1749614 88702991 ~ 88704054 (-)

Expression

LOC110517235(LOC106592571) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110517235(LOC106592571) Expression in each Bioproject

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LOC110517235(LOC106592571) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network