LOC110517127 (vapa)


Basic Information

Item Value
gene id LOC110517127
gene name vapa
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87794124 ~ 87824786 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986651.1
GTTCAGGTTGttagaccagagagaccagtcaGCGACTCTTCAGCTCCAACTAGCAGGACCACCTCTCGTCAGTGTCTCTGACAACGCTATAGATAAATATGTCCAAGTTGGAGCAAATCCTTGTCCTCGACCCCCCCTGTGACCTCAGATTTAAAGgtcCCTTCACTGATGTCGTCACCACCAACCTGAAGCTGAAGAACCCGTCTGATAGGAGTGTATGTTTCAAAGTGAAGACCACAGCTCCCAAGAGATACTGTGTACGGCCCAACAGCGGCATCATCGATGTAGGTGCTACCGTCACCATCTCTGTAATGCTCCAGCCCTTCGACTACGACCCCAACGAGAAAAGTAAACACAAATTCATGGTCCAGAGTATCTTTGCGCTTCCTAATGTGGCTGAGATGGATGCAATGtgGAAAGATGTGAAACCTCATGACCTCATGGATTCCAAGCTGAGATGTGTATTCGACCTGCCTTCTGAAAACAATGAAGTGATCGACGTGGAGTTGAGCAGCAACACGACGGCTCCCGTACAGAACTCGTCCAAGGCGGCTCCCGTGCTGACAGCGGCGAAGACCGCCAGCGTCTCAACCAACGCCTCTGAGATGAGGAAACTAACAGAGGAATGCAGGAGACTTCAGGCTGAGATGGACAAGCTGACCGGCGAAAACCGTCAACTCAAGGACGACGGCGTTAGAATGAGAAGGGCTGCCCAGCGTTCTGACCACATGACATCAAACCAGAcgggctcctcctcctcctccatgatgCAACAGACGACCGccgcctccctcccctctctcctcgttgTCATAGCAGCCATCTTCATCGGATTCTTCATCGGGAAGTTCATCTTGTAAACTGGAACtggctctgaaatggcaccctattttctatTTTGTGCACAATTTTTTTTGTTGAGCAGAACCgatagggagtcccataggggcctCTGGTtcaaagtagggcactacatagggaatagggtgccatttcggacagcGCGCCCTGGGAGAAGCAAGACGCCTGCCGTATCTAATGACAACCCCTCGGCTCCTGAATCAAAAGGCCGAAAGGGTGGAACTGACTAACCAAGAAGGAAAGACTTTGTGTTGACTTTGCCATATCAGAAGTAGTGCTCTGTCTGCAGTGgccatgttgtctgtctgtacagtACGAGGGCCCCCACTGCCTTTCTGCAAGCCTTTACACATGGTTAGTGTACacacagaggggagagaggaaaggaaaggaaaggaaaggaaggaagaTAACGAAAAAGATGGTTCCGTTTAGTTTTTCTGCCTTGTTTTTGCTGGATGGACAGACAGCCTAAGTGCAGGTATGAGATGTACGTACCAAATAGCACCTTTATTCCCtgcatagtacactacttctaatggtcctggtcaacagtagtgcactgcacaaggaatagggtgccttttgggggACACACAGGAAGTGGTACACTATCAATCAACACGGAGGACAGTTTATGACGTGCCTAGGCCCTGTTAGAGTACTTTAACGCACCGTTCCTACCTTACGAGGTAAGCATAGCTCCATAAGTGGTTAGATCGGtgaaaagcccccccccccccccccccccccttattacTTTACCCAATTCAGATCTGTGATTCCTTCAAGGAAGATGGGTAGGAAGGAACTAATGCATGATGGGTAGGAAGGAACTAATGCATGGTGGGTAGGAAGGAACTAATGCATGGTGGGTAGGAAGGAACTTATGCATGATGGGTAGGAAGGAACTAATGCATGGTGGGTAGGAAGGAACTATGCATGGTGGGTAGGAAGGAACTAATGCATGGTGGGTAGGAAGGAACTAATGCATGATGGGTAGGAAGGAACTAATGCATGATGGGTAGGAAGGAACTAATGCATGATGGGTAGGAAGGAACTAATGCATGATGGGTAGGAAGGAACTAATGCATGATGGGTAGGAAGGAACTTATGCATGATGGGTAGGAAGGAACTAATGCATGATGGGTAGGAAGGAACTTATGCATGATGGGTAGGAAGGGAACTATGCATGATGGGTAGGAAGGGAACTATGCATGATGGGTAGGAAGGGAACTATGCATGATGGGTAGGAAGGGAACTATGCATGATGGGTAGGAAGGGAACTATGCATGATGGGTAGGATGGGAACTATGCATTTCTTAAGTATTGGAACACGGTCCTAGTCACCATGGGGACATGAAGCAGTTGAATAAACCAATcgtcttctctcgctctctcactcttttttttaattataaaaaaaataaaaaatagtactTGAATGAAATGTTAAgtgaaacatttttattttaatccTTTTTTTTAAGCTAAAAAGGAGAGAACTACTTCTTCCGTTGTCCAAACACCGACCACCTCGCTACTTAATGCAGGATCGCCTCTGATGTAGTCCGTACAAAATGGtactcctattccctgtataatgTCCCGCTTTTCACCAGGGCCTGTAGGGCgatctggtataaagtagtgcactatatggctGGATGGATATATGGACGAACGGATagatggggtgccatttgggacggagacGTCGACTACTTGATTTGTTCAGTTTAGTAATTTCTCTACTTCTCTGGGAAATGTTTCTAGTCCATCTGGGACAAAGGTCCTTCCCTACTTCCTGTCCAATTCTATCCCTACTTCCTATCCTATCCCTACTTCCTATCCAATTCTAGCCCTACTTCCTGTCCATCCTAGCCCTACTTCCTGTCCAATCCTATCCCCACTTCCTGTCCAATCCTATCCCCACTTCCTGTCCAATCCTCTCCCCACTTCCTGTCCAATCCTCTCCCCACTTCCTGTCCAATCCTCTCCCCACTTCCTGTCCAATCCTCTCTCCTTACCTTCTGAGGCAAATGTTCTTAACCCCATCCCTCCCATGGTATTAAGCATTGAAGAAATAAAACTGAAAACAATGTTG

Function

symbol description
vapa Acts upstream of or within regulation of heart contraction. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in heart. Orthologous to human VAPA (VAMP associated protein A).

NR:

description
PREDICTED: vesicle-associated membrane protein-associated protein A

GO: NA

KEGG:

id description
K10707 VAPB, ALS8; vesicle-associated membrane protein-associated protein B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986651.1 True 2968 mRNA 0.48 6 87794124 87824786
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110517235 LOC106592571 coding downstream 840747 86920601 ~ 86953377 (-)
LOC110529151 LOC106569758 coding downstream 890169 86896684 ~ 86903955 (-)
LOC110531045 LOC106569759 coding downstream 901291 86873956 ~ 86892833 (-)
LOC118965578 NA coding downstream 920323 86868307 ~ 86873801 (-)
LOC110530853 LOC106569760 coding downstream 936666 86775438 ~ 86857458 (-)
LOC110530881 LOC106569740 coding upstream 9888 87834674 ~ 87846312 (-)
ralbp1 ralbp1 coding upstream 25085 87849871 ~ 87876745 (-)
LOC110530873 LOC106596679 coding upstream 66440 87891226 ~ 87934005 (-)
LOC110530858 NA coding upstream 116022 87940808 ~ 87943613 (-)
LOC110531046 ankrd12 coding upstream 119473 87944259 ~ 88001120 (-)
G759139 NA non-coding downstream 1298 87735024 ~ 87792826 (-)
G759157 NA non-coding downstream 16911 87776171 ~ 87777213 (-)
G759148 NA non-coding downstream 28145 87763856 ~ 87765979 (-)
G758820 NA non-coding downstream 159185 87618016 ~ 87634939 (-)
G758819 NA non-coding downstream 161512 87617476 ~ 87632612 (-)
G759134 NA non-coding upstream 22150 87846936 ~ 87881569 (-)
G759168 NA non-coding upstream 27990 87852776 ~ 87853121 (-)
G759171 NA non-coding upstream 37837 87862623 ~ 87863482 (-)
G759180 NA non-coding upstream 75606 87900392 ~ 87901175 (-)
G757788 NA other downstream 1561932 86230374 ~ 86308150 (-)
G757422 NA other downstream 1930237 85863011 ~ 85863887 (-)
G757292 LOC106569817 other downstream 2038886 85703130 ~ 85756434 (-)
G756981 NA other downstream 2379422 85413431 ~ 85414702 (-)
G757086 NA other downstream 2390597 85402618 ~ 85404005 (-)
G759421 NA other upstream 606418 88430998 ~ 88443468 (-)
G759982 NA other upstream 710854 88535640 ~ 88536047 (-)
G759998 NA other upstream 838818 88638913 ~ 88667229 (-)
G760051 NA other upstream 878205 88702991 ~ 88704054 (-)

Expression

LOC110517127(vapa) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
End of interactive chart.

LOC110517127(vapa) Expression in each Bioproject

Bar chart with 21 bars.
LOC110517127(vapa) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network