LOC110530858


Basic Information

Item Value
gene id LOC110530858
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 87940808 ~ 87943613 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052994.1
atagtgaactactttagaccagagccctatggaaccctattccctatgtagtgaactactttagaccagagccctacagaaccctattccctatatagtgaactactttagaccagggccctatgcaGGCTCTTGTCAAAAAGTATTGCAGACCTCCCAACCTGCGTGCAGTTTGCGTAACATAGTCCAAAGTACTCTGGTATGAAAAACAACCTTAAAATACATATGAACAGGCTTCTAGTTGGCAGAATTAGTGTGGTTTTTTTGTTGACTCGACTGTCTGACGTTGGAGCTGAGCCAATCAGGGGACTTGGGCGAATAGAACAGATTTTTAGCTTTCCCCCCTCCAGCAAGATGGCAGCTCTCCACTTGGTCTGTTGATATCACTGatggatgagggaaaaaaacggcATGAAAACATTTCCCGAAATTGTATGGTGTTAGTCAAGCACGTAACTATTATTTCGTAGTTGGCTCCTTCGCTAAGGGGTCACTACGTCGAAGGTAGTTGGCTCCTTCGCTAAGGGCTCACTACGGCGAGGGTAGTTAGCTCCTTCGCTGAGGGCTCACTACGGCGAAGGTAGTTGGCTCCTTCGCTGAGGGCTCACTACGGCGAAGGTAGTTAGCTCCTTCGTTGAGGGCTCACTACGGCGAGGGTAGTTAGCTCCTTCGCTGAGGGCTCACTACGGCGAAGGTAGTTGGCTCCTTCGCTGAGGGCTCACTACGGCGAAGGTAGTTAGCTCCTTCGTTGAGGGCTCACTACGGCGAGGGTAGTTAGCTCCTTCGCTGAGGGCTCACTACGGCGAAGGTAGTTGGCTCCTTCGCTGAGGGCTCACTACGGCGAAGGTAGTTGGCTCCTTCGCTGAGGGCTCACTACGGCGAAGGTAGTTAGCTCCTTCGCTGAGGGGTCACTACGGCGAAGGTAGTTAGCTCCTTCGCTGAGGGCTCACTACGGCGAAGGTAGTTAGCTCCTTCGCTAAGGGGTCACTACGGCGAAGGTAGTTAGCTCCTTCGCTGAGGGCTCACTACGGCGAAGGTAGTTGGCTCCTTCGCTGAGGGCTCACTACGGCGAAGGTAGTTGGCTCCTTCGCTGAGGGGTCACTACGGCGAAGGTAGTTAGCTCCTTCGCTGAGGGCTCACTACGGCGAAGGTAGTTAGCTACAGCGTTTAGTCAACTAAGCGAGAACTTTCTTGCCTGGACATTTTGATTTCCGTCATGGTAGTAGGTCGGGAGCGCATTAACGAGAAAAGGGGAACGTGCGGTGTTGCTGAAGTTCAGCGCGCGTCGCTGTGTGGATGGAAACAGACATGGCAGAGAGCTGCTGTTTCCCCGCTGATACCGTCCTTCGTAGAAAGTTATGTCAGACTGTTAAACATTAGCAGGCATTATGTTAACGACTACATTGCATCCAGTAATTTCATTATTCTGAATTTTCTCCACAAACAAAATGAAGAAGCCCGTTTACATTTGAGTGACTATGGACATAAAGACAGTTATTTGTTAGAATAGTCGTTACTGGGGTGGCGCAGTGTAAATGGTCTtaaggctgtgccaccagagattctgggttcaaatCCAGACTGTCACTGCCGGCtgtgaccaggagacccatggggctgcgcacaattggcccagcgtcgtccgggttaggggaggggtttggccgggcagggatgtccttgtcccatcgcgctctagcggcTCCTCTGGCagaccgggcgcagtgcacgctgacacggtcgccaggtgtacggcgtttcctccgacacattggtgcggtttggcttccgggttaagtgggcgttGTGCCAAGAAGCggtgcggcttggttgtgtttcggaggacgcacggctctcaaccttcgcctctcccgagtccgtacgggagttgcagggATGAGACTGTAAACTACCAAACGACTGTCATTACCCCTAAATTGAACCTAGAAAAATGTGTTATTGAGACCACCACAATTTAATTTAAGAGCAAACACAATACTTCTTGTTTGATTATAATTTAAGACTAGGTTTCAGGAGATGAGTTACAGGTTTTTCAAAAAATGCTCCAATTTCCTGAGGGGGAAGttgactgaccccccccccccccccccccccccccccaccaccccaacCTTAGTCCTACATCAGCCCCACCTTGTCAGAAAGCcctgattttgtacattttaaatgtatttctagTTGGCTAGTGAAAGAAAAACAGCTAATTACCAAGTACCCATAGCTGGCTATCGCCTACAATTCCTCTTGAGGCATCCAACATCATTGTTAGGCTAAAATCGGATTTGTTAGGCCTATGATTTGAGCAGTCTGGGTGCCGTTGGGGTCTAGTGTCGCCACAGCGCTGAAGTGgtactcatttaaaaaaaataataaaaatattcaGTTGTAGTGAACTATGCGGGCCCTGGTCTaaactatatagggactagggtactGTTTTGGACACATCACTGTACAGTTCCTCAACCTCCTGTGTGTTGTTCTTTTTAGGTGGTGTGTCGCACACATTAAAAGAATAACCATTTTGTTGTGGCAAAATTCTTCTATAGAAATagatggagaaaaaaaagctAAACTTTTACAGTTTCGATGTGagatcacaacaacaaaaaaactattttttcaacATATTGCCTTTTCAACGATCGTTCTAAAAAAAAATTTCTATTTTAATATTTTACTTGTTACATGACATGTACATATTTGTAATATATAATTGAATAAATTTTATTGGTTGTGAATTAAAA
>TU862683
GGCTCACTACGGCGAAGGTAGTTGGCTCCTTCGCTGAGGGCTCACTACGGCGAAGGTAGTTGGCTCCTTCGCTGAGGGCTCACTACGGCGAAGGTAGTTAGCTCCTTCGCTGAGGGGTCACTACGGCGAAGGTAGTTAGCTACAGCGTTTAGTCAACTAAGCGAGAACTTTCTTGCCTGGACATTTTGATTTCCGTCATGGTAGTAGGTCGGGAGCGCATTAACGAGAAAAGGGGAACGTGCGGTGTTGCTGAAGTTCAGCGCGCGTCGCTGTGTGGATGGAAACAGACATGGCAGAGAGCTGCTGTTTCCCCGCTGATACCGTCCTTCGTAGAAAGTTATGTCAGACTGTTAAACATTAGCAGGCATTATGTTAACGACTACATTGCATCCAGTAATTTCATTATTCTGAATTTTCTCCACAAACAAAATGAAGAAGCCCGTTTACATTTGAGTGACTATGGACATAAAGACAGTTATTTGTTAGAATAGTCGTTACTGGGGTGGCGCAGTGTAAATGGTCTtaaggctgtgccaccagagattctgggttcaaatCCAGACTGTCACTGCCGGCtgtgaccaggagacccatggggctgcgcacaattggcccagcgtcgtccgggttaggggaggggtttggccgggcagggatgtccttgtcccatcgcgctctagcggcTCCTCTGGCagaccgggcgcagtgcacgctgacacggtcgccaggtgtacggcgtttcctccgacacattggtgcggtttggcttccgggttaagtgggcgttGTGCCAAGAAGCggtgcggcttggttgtgtttcggaggacgcacggctctcaaccttcgcctctcccgagtccgtacgggagttgcagggATGAGACTGTAAACTACCAAACGACTGTCATTACCCCTAAATTGAACCTAGAAAAATGTGTTATTGAGACCACCACAATTTAATTTAAGAGCAAACACAATACTTCTTGTTTGATTATAATTTAAGACTAGGTTTCAGGAGATGAGTTACAGGTTTTTCAAAAAATGCTCCAATTTCCTGAGGGGGAAGttgactgaccccccccccccccccccccccccccccaccaccccaacCTTAGTCCTACATCAGCCCCACCTTGTCAGAAAGCcctgattttgtacattttaaatgtatttctagTTGGCTAGTGAAAGAAAAACAGCTAATTACCAAGTACCCATAGCTGGCTATCGCCTACAATTCCTCTTGAGGCATCCAACATCATTGTTAGGCTAAAATCGGATTTGTTAGGCCTATGATTTGAGCAGTCTGGGTGCCGTTGGGGTCTAGTGTCGCCACAGCGCTGAAGTGgtactcatttaaaaaaaataataaaaatattcaGTTGTAGTGAACTATGCGGGCCCTGGTCTaaactatatagggactagggtactGTTTTGGACACATCACTGTACAGTTCCTCAACCTCCTGTGTGTTGTTCTTTTTAGGTGGTGTGTCGCACACATTAAAAGAATAACCATTTTGTTGTGGCAAAATTCTTCTATAGAAATagatggagaaaaaaaagctAAACTTTTACAGTTTCGATGTGagatcacaacaacaaaaaaactattttttcaacATATTGCCTTTTCAACGATCGTTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052994.1 False 2768 mRNA 0.48 2 87940808 87943613
TU862683 True 1653 TUCP 0.48 2 87940904 87942822

Neighbor

gene id symbol gene type direction distance location
LOC110530873 LOC106596679 coding downstream 6803 87891226 ~ 87934005 (-)
ralbp1 ralbp1 coding downstream 64063 87849871 ~ 87876745 (-)
LOC110530881 LOC106569740 coding downstream 94496 87834674 ~ 87846312 (-)
LOC110517127 vapa coding downstream 116022 87794124 ~ 87824786 (-)
LOC110517235 LOC106592571 coding downstream 987431 86920601 ~ 86953377 (-)
LOC110531046 ankrd12 coding upstream 646 87944259 ~ 88001120 (-)
LOC110530857 ndufv2 coding upstream 59240 88002853 ~ 88017103 (-)
LOC110518901 LOC106596607 coding upstream 133588 88077201 ~ 88331495 (-)
LOC110509139 rab12 coding upstream 398842 88342455 ~ 88362306 (-)
LOC110531049 LOC106591876 coding upstream 436324 88379937 ~ 88570992 (-)
G759184 NA non-coding downstream 27378 87906440 ~ 87913430 (-)
G759180 NA non-coding downstream 39633 87900392 ~ 87901175 (-)
G759134 NA non-coding downstream 59239 87846936 ~ 87881569 (-)
G759171 NA non-coding downstream 77326 87862623 ~ 87863482 (-)
G759168 NA non-coding downstream 87687 87852776 ~ 87853121 (-)
G759209 NA non-coding upstream 38553 87982166 ~ 87983112 (-)
G759225 NA non-coding upstream 117080 88060693 ~ 88064651 (-)
G759242 NA non-coding upstream 133150 88076763 ~ 88076982 (-)
G759243 NA non-coding upstream 135089 88078702 ~ 88080458 (-)
G759246 NA non-coding upstream 137367 88080980 ~ 88081384 (-)
G757788 NA other downstream 1708616 86230374 ~ 86308150 (-)
G757422 NA other downstream 2076921 85863011 ~ 85863887 (-)
G757292 LOC106569817 other downstream 2185570 85703130 ~ 85756434 (-)
G756981 NA other downstream 2526106 85413431 ~ 85414702 (-)
G757086 NA other downstream 2537281 85402618 ~ 85404005 (-)
G759421 NA other upstream 487591 88430998 ~ 88443468 (-)
G759982 NA other upstream 592027 88535640 ~ 88536047 (-)
G759998 NA other upstream 719991 88638913 ~ 88667229 (-)
G760051 NA other upstream 759378 88702991 ~ 88704054 (-)
LOC110530888 LOC106569654 other upstream 884371 88827984 ~ 88833229 (-)

Expression


Co-expression Network