acss2l (LOC106596660)


Basic Information

Item Value
gene id acss2l
gene name LOC106596660
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88017220 ~ 88059703 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986662.1
CGTAGATTTTCATTCTGACCCGAAGTCGCCCTAGAAAAAGACGCAATTGtctctacaagccagaatgttgaatacaatGATATGTACAGGGTGTACATGCTGTAGGTCCTTCTGATGACTGGAGGTGGAGATAAGtcagatagacagacagacgtactGTAGATAGAGCTATCAACGATGGTGGTCCCTGGCTCTCAACACATAGAGGACAAGATGTACCATCCTCCGGAGGGTTTGCAGAAGGATGCTCATGTGCCTGACTTCAACTGTTATCTGGAACTTTACAAGAAGTCTATTGAGGAGCCGGACGCATTCTGGAAAGAGGTCGCTAGTGATTTCTATTGGAAGAAACCTCCCACGGGTCAGATCCTGCAGTATAACTTCGACGTGACCAAAGGGAACATCTATGTGAAATGCATGGAGGGAGCCACAACTAACATGTGTTACAACGTCCTGGACAGGAACGTGAAGGACAAGAACCTTGGTGAACGAGTGGCGTTCTACTGGGAGGGGAACTCACCTGATCACCACGAGGCCATCACCTACGGTCAGCTGCTTGGACAGGTGTGCAGGTGTTCCAACACTCTGAAGCAGATGGGAGTGAGGAAGGGAGACAGGGTGGCCATCTACCTCCCTATGATTCCAGAGCTGGTGTACACCATGCTGGCCTGCACCAGGATAGGAGCTGTCCACTCCATCGTGtttgCAGGCTTCTCCGCTGAGTCTCTGTGTGAGAGGATCATGGATTCCCAGTGTAGTATCCTGGTGACTGCAGatgGTGTGTACAGAGGGGAGAAGTTGATCAACCTGAAACAGATAGCAGACGAGGCTCTGGAGAAATGTAGGGAGAAAGCATCCGCCACTGTTACACGATGTTTAGTAGTGAAACACCATGCACTGAGGACACAAGATGGAGATGTTGCCAACACATTGCAGaccccgTGGGATGCTGCGTGTGATGTGTGTTGGGAGgaggtgatgggacaggtctcAGAGCACTGTGAACCTGAGTGGCTGGATGCAGAGGATCCTCTCTTTATACTTTATACCAGCGGATCTACGGGCAAACCAAAGGGTGTCCTCCACACGGTAGCAGGCTACCTGCTCTACACCTCTCTGACCTTTAAGTATGTGTTTGACCACCAGCCAGACGATGTGTACTGGTGTACCGCAGATATAGGATGGATCACCGGGCACTCCTACATCACCTATGGACCCCTGGCCAACGGGGCTACCAGCGTACTGttTGAGGGTATTCCAGTCCATCCTCACGTTGGGCGTTTCTGGGAGGTGATTGAGAAGTACAGAGTGACCAAGTTCTACACAGCTCCCACAGCCATACGCCTCCTGATGAAGTACGGATTAGATCCAGTACAgaaGTACGACCTGTCATCGCTGAGGATTCTGGGTACTGTAGGTGAGCCCATCAACCCGGAGGCGTGGCATTGGTACCACGAGGTGATTGGTCAGAAGAGATGCCCTGTGGTGGACACCTTCTGGCAGACCGAGACGGGTGGCCATGTTTTAACTCCTTTACCTGCCGCTACACCTCTGAAACCTGGATCAGCTACGTTTCCTTTCTTTGGCGTGGAGCCTACCATACTGAACGAGCATGGAGAGGAactggagggagaggcagagggctATCTGGTGTTCCGTCGGCCCTGGCCTGGTATCATGCGTACCTTGTACGGAAACCAGGAGCGATTTGAGAACACTTACTTCAAGAAGTTCCCAGGTTTCTACGTGACCGGGGATGGCTGcaggagggatagagatggataCTACTGGATCGCAGGCAGGATAGATGACATGATCAACGTATCAGGTCACCTGTTGAGTACAGCGGAGGTAGAGGCATCTCTAACAGACCACGGAGCGGTGGCCGAGGCTGCTGTGGTCAGCAGACCCCACGCGGTCAAGGGGGAGTGTCTCTACTGTTTCGTTACTCTGAAGGACTGCAGAGAGTTCAACCGCACTCTGGTGGACGAACTCAAGAGACAAGTGAGGGAGAAGATTGGTCCGATCGCCACCCCAGACTTCATCCAGAATGCTCCTGGACTTCCTAAAACACGATCTGGTAAGATCATGAGGCGGGTCCTGAGGCAGATCGCCCGGAACGAGAAGGATCTAGGTGACCTTTCAACTATGGCTGACCCCAAGGTCGTAGAGGTCCTGTTCAACCACCGCTGTGAAACGGCCTCTTGAGGGGGCTGCATGTCAACACTACAGTAGCTTCCTCTCCTCGacacctcatctcctctctttgtctcctcATTTCCTCTATATCATCCACACCGATCTGAAAACTATGGAAGCCCATTCCTGCCACcaactcttaaaaaaaaaaaaaatgttttttaaaaataataGAACATACAGgatatatttcttaatttttAGCAGTATGTGCACATTTATTTCCATCTGTCCACGTTGCAGGGTGGCCGGAAGATGTGTGGCGAGCTGGCATTTACCCCAACACTTTTTCAATTcggtttaataaaaaatattgaCACAAAA
>XM_036986659.1
TTTCATTCTGACCCGAAGTCGCCCTAGAAAAAGACGCAATTGtctctacaagccagaatgttgaatacaatGATATGTACAGGGTGTACATGCTGTAGGTCCTTCTGATGACTGGAGGTGGAGATAAGGTATCCACATTAGTGTTGTTTGCCTACCTTTTTCCACTCTCAGtcagatagacagacagacgtactGTAGATAGAGCTATCAACGATGGTGGTCCCTGGCTCTCAACACATAGAGGACAAGATGTACCATCCTCCGGAGGGTTTGCAGAAGGATGCTCATGTGCCTGACTTCAACTGTTATCTGGAACTTTACAAGAAGTCTATTGAGGAGCCGGACGCATTCTGGAAAGAGGTCGCTAGTGATTTCTATTGGAAGAAACCTCCCACGGGTCAGATCCTGCAGTATAACTTCGACGTGACCAAAGGGAACATCTATGTGAAATGCATGGAGGGAGCCACAACTAACATGTGTTACAACGTCCTGGACAGGAACGTGAAGGACAAGAACCTTGGTGAACGAGTGGCGTTCTACTGGGAGGGGAACTCACCTGATCACCACGAGGCCATCACCTACGGTCAGCTGCTTGGACAGGTGTGCAGGTGTTCCAACACTCTGAAGCAGATGGGAGTGAGGAAGGGAGACAGGGTGGCCATCTACCTCCCTATGATTCCAGAGCTGGTGTACACCATGCTGGCCTGCACCAGGATAGGAGCTGTCCACTCCATCGTGtttgCAGGCTTCTCCGCTGAGTCTCTGTGTGAGAGGATCATGGATTCCCAGTGTAGTATCCTGGTGACTGCAGatgGTGTGTACAGAGGGGAGAAGTTGATCAACCTGAAACAGATAGCAGACGAGGCTCTGGAGAAATGTAGGGAGAAAGCATCCGCCACTGTTACACGATGTTTAGTAGTGAAACACCATGCACTGAGGACACAAGATGGAGATGTTGCCAACACATTGCAGaccccgTGGGATGCTGCGTGTGATGTGTGTTGGGAGgaggtgatgggacaggtctcAGAGCACTGTGAACCTGAGTGGCTGGATGCAGAGGATCCTCTCTTTATACTTTATACCAGCGGATCTACGGGCAAACCAAAGGGTGTCCTCCACACGGTAGCAGGCTACCTGCTCTACACCTCTCTGACCTTTAAGTATGTGTTTGACCACCAGCCAGACGATGTGTACTGGTGTACCGCAGATATAGGATGGATCACCGGGCACTCCTACATCACCTATGGACCCCTGGCCAACGGGGCTACCAGCGTACTGttTGAGGGTATTCCAGTCCATCCTCACGTTGGGCGTTTCTGGGAGGTGATTGAGAAGTACAGAGTGACCAAGTTCTACACAGCTCCCACAGCCATACGCCTCCTGATGAAGTACGGATTAGATCCAGTACAgaaGTACGACCTGTCATCGCTGAGGATTCTGGGTACTGTAGGTGAGCCCATCAACCCGGAGGCGTGGCATTGGTACCACGAGGTGATTGGTCAGAAGAGATGCCCTGTGGTGGACACCTTCTGGCAGACCGAGACGGGTGGCCATGTTTTAACTCCTTTACCTGCCGCTACACCTCTGAAACCTGGATCAGCTACGTTTCCTTTCTTTGGCGTGGAGCCTACCATACTGAACGAGCATGGAGAGGAactggagggagaggcagagggctATCTGGTGTTCCGTCGGCCCTGGCCTGGTATCATGCGTACCTTGTACGGAAACCAGGAGCGATTTGAGAACACTTACTTCAAGAAGTTCCCAGGTTTCTACGTGACCGGGGATGGCTGcaggagggatagagatggataCTACTGGATCGCAGGCAGGATAGATGACATGATCAACGTATCAGGTCACCTGTTGAGTACAGCGGAGGTAGAGGCATCTCTAACAGACCACGGAGCGGTGGCCGAGGCTGCTGTGGTCAGCAGACCCCACGCGGTCAAGGGGGAGTGTCTCTACTGTTTCGTTACTCTGAAGGACTGCAGAGAGTTCAACCGCACTCTGGTGGACGAACTCAAGAGACAAGTGAGGGAGAAGATTGGTCCGATCGCCACCCCAGACTTCATCCAGAATGCTCCTGGACTTCCTAAAACACGATCTGGTAAGATCATGAGGCGGGTCCTGAGGCAGATCGCCCGGAACGAGAAGGATCTAGGTGACCTTTCAACTATGGCTGACCCCAAGGTCGTAGAGGTCCTGTTCAACCACCGCTGTGAAACGGCCTCTTGAGGGGGCTGCATGTCAACACTACAGTAGCTTCCTCTCCTCGacacctcatctcctctctttgtctcctcATTTCCTCTATATCATCCACACCGATCTGAAAACTATGGAAGCCCATTCCTGCCACcaactcttaaaaaaaaaaaaaatgttttttaaaaataataGAACATACAGgatatatttcttaatttttAGCAGTATGTGCACATTTATTTCCATCTGTCCACGTTGCAGGGTGGCCGGAAGATGTGTGGCGAGCTGGCATTTACCCCAACACTTTTTCAATTcggtttaataaaaaatattgaCACAAAA
>XM_036986661.1
acCCGAATGTAACCAAAGCACGTTTCCTCGCAATCAGCAGGACTTGTTTGCCTTTCGGTCTGTGGTTAGATTAGTCTCAGCCATATTGTGCAAGTGTTTGTCACATGCGAATTGCAtcagtattgaaaataaaaaaacggaaataAAAACCGATGAACAGACCAGCATACTGAAGGTCGGATTGATAGCATTTCCCTGTGGATATTTTGTATCAGATTACCTCCGATATAGGGATAAAATCATCAGGACAACAGGTCAAtcagatagacagacagacgtactGTAGATAGAGCTATCAACGATGGTGGTCCCTGGCTCTCAACACATAGAGGACAAGATGTACCATCCTCCGGAGGGTTTGCAGAAGGATGCTCATGTGCCTGACTTCAACTGTTATCTGGAACTTTACAAGAAGTCTATTGAGGAGCCGGACGCATTCTGGAAAGAGGTCGCTAGTGATTTCTATTGGAAGAAACCTCCCACGGGTCAGATCCTGCAGTATAACTTCGACGTGACCAAAGGGAACATCTATGTGAAATGCATGGAGGGAGCCACAACTAACATGTGTTACAACGTCCTGGACAGGAACGTGAAGGACAAGAACCTTGGTGAACGAGTGGCGTTCTACTGGGAGGGGAACTCACCTGATCACCACGAGGCCATCACCTACGGTCAGCTGCTTGGACAGGTGTGCAGGTGTTCCAACACTCTGAAGCAGATGGGAGTGAGGAAGGGAGACAGGGTGGCCATCTACCTCCCTATGATTCCAGAGCTGGTGTACACCATGCTGGCCTGCACCAGGATAGGAGCTGTCCACTCCATCGTGtttgCAGGCTTCTCCGCTGAGTCTCTGTGTGAGAGGATCATGGATTCCCAGTGTAGTATCCTGGTGACTGCAGatgGTGTGTACAGAGGGGAGAAGTTGATCAACCTGAAACAGATAGCAGACGAGGCTCTGGAGAAATGTAGGGAGAAAGCATCCGCCACTGTTACACGATGTTTAGTAGTGAAACACCATGCACTGAGGACACAAGATGGAGATGTTGCCAACACATTGCAGaccccgTGGGATGCTGCGTGTGATGTGTGTTGGGAGgaggtgatgggacaggtctcAGAGCACTGTGAACCTGAGTGGCTGGATGCAGAGGATCCTCTCTTTATACTTTATACCAGCGGATCTACGGGCAAACCAAAGGGTGTCCTCCACACGGTAGCAGGCTACCTGCTCTACACCTCTCTGACCTTTAAGTATGTGTTTGACCACCAGCCAGACGATGTGTACTGGTGTACCGCAGATATAGGATGGATCACCGGGCACTCCTACATCACCTATGGACCCCTGGCCAACGGGGCTACCAGCGTACTGttTGAGGGTATTCCAGTCCATCCTCACGTTGGGCGTTTCTGGGAGGTGATTGAGAAGTACAGAGTGACCAAGTTCTACACAGCTCCCACAGCCATACGCCTCCTGATGAAGTACGGATTAGATCCAGTACAgaaGTACGACCTGTCATCGCTGAGGATTCTGGGTACTGTAGGTGAGCCCATCAACCCGGAGGCGTGGCATTGGTACCACGAGGTGATTGGTCAGAAGAGATGCCCTGTGGTGGACACCTTCTGGCAGACCGAGACGGGTGGCCATGTTTTAACTCCTTTACCTGCCGCTACACCTCTGAAACCTGGATCAGCTACGTTTCCTTTCTTTGGCGTGGAGCCTACCATACTGAACGAGCATGGAGAGGAactggagggagaggcagagggctATCTGGTGTTCCGTCGGCCCTGGCCTGGTATCATGCGTACCTTGTACGGAAACCAGGAGCGATTTGAGAACACTTACTTCAAGAAGTTCCCAGGTTTCTACGTGACCGGGGATGGCTGcaggagggatagagatggataCTACTGGATCGCAGGCAGGATAGATGACATGATCAACGTATCAGGTCACCTGTTGAGTACAGCGGAGGTAGAGGCATCTCTAACAGACCACGGAGCGGTGGCCGAGGCTGCTGTGGTCAGCAGACCCCACGCGGTCAAGGGGGAGTGTCTCTACTGTTTCGTTACTCTGAAGGACTGCAGAGAGTTCAACCGCACTCTGGTGGACGAACTCAAGAGACAAGTGAGGGAGAAGATTGGTCCGATCGCCACCCCAGACTTCATCCAGAATGCTCCTGGACTTCCTAAAACACGATCTGGTAAGATCATGAGGCGGGTCCTGAGGCAGATCGCCCGGAACGAGAAGGATCTAGGTGACCTTTCAACTATGGCTGACCCCAAGGTCGTAGAGGTCCTGTTCAACCACCGCTGTGAAACGGCCTCTTGAGGGGGCTGCATGTCAACACTACAGTAGCTTCCTCTCCTCGacacctcatctcctctctttgtctcctcATTTCCTCTATATCATCCACACCGATCTGAAAACTATGGAAGCCCATTCCTGCCACcaactcttaaaaaaaaaaaaaatgttttttaaaaataataGAACATACAGgatatatttcttaatttttAGCAGTATGTGCACATTTATTTCCATCTGTCCACGTTGCAGGGTGGCCGGAAGATGTGTGGCGAGCTGGCATTTACCCCAACACTTTTTCAATTcggtttaataaaaaatattgaCACAAAA
>XM_036986660.1
CTTTCTGTAGTTGTCTGTGCCTGGCCACACTTctagtctctcccctcctctacgcCTCGGATGATAGACAAATCAAATCAGTGGAGTGACTGCCTGGCCTCACCTCtaaatctctttctctccagtcagatagacagacagacgtactGTAGATAGAGCTATCAACGATGGTGGTCCCTGGCTCTCAACACATAGAGGACAAGATGTACCATCCTCCGGAGGGTTTGCAGAAGGATGCTCATGTGCCTGACTTCAACTGTTATCTGGAACTTTACAAGAAGTCTATTGAGGAGCCGGACGCATTCTGGAAAGAGGTCGCTAGTGATTTCTATTGGAAGAAACCTCCCACGGGTCAGATCCTGCAGTATAACTTCGACGTGACCAAAGGGAACATCTATGTGAAATGCATGGAGGGAGCCACAACTAACATGTGTTACAACGTCCTGGACAGGAACGTGAAGGACAAGAACCTTGGTGAACGAGTGGCGTTCTACTGGGAGGGGAACTCACCTGATCACCACGAGGCCATCACCTACGGTCAGCTGCTTGGACAGGTGTGCAGGTGTTCCAACACTCTGAAGCAGATGGGAGTGAGGAAGGGAGACAGGGTGGCCATCTACCTCCCTATGATTCCAGAGCTGGTGTACACCATGCTGGCCTGCACCAGGATAGGAGCTGTCCACTCCATCGTGtttgCAGGCTTCTCCGCTGAGTCTCTGTGTGAGAGGATCATGGATTCCCAGTGTAGTATCCTGGTGACTGCAGatgGTGTGTACAGAGGGGAGAAGTTGATCAACCTGAAACAGATAGCAGACGAGGCTCTGGAGAAATGTAGGGAGAAAGCATCCGCCACTGTTACACGATGTTTAGTAGTGAAACACCATGCACTGAGGACACAAGATGGAGATGTTGCCAACACATTGCAGaccccgTGGGATGCTGCGTGTGATGTGTGTTGGGAGgaggtgatgggacaggtctcAGAGCACTGTGAACCTGAGTGGCTGGATGCAGAGGATCCTCTCTTTATACTTTATACCAGCGGATCTACGGGCAAACCAAAGGGTGTCCTCCACACGGTAGCAGGCTACCTGCTCTACACCTCTCTGACCTTTAAGTATGTGTTTGACCACCAGCCAGACGATGTGTACTGGTGTACCGCAGATATAGGATGGATCACCGGGCACTCCTACATCACCTATGGACCCCTGGCCAACGGGGCTACCAGCGTACTGttTGAGGGTATTCCAGTCCATCCTCACGTTGGGCGTTTCTGGGAGGTGATTGAGAAGTACAGAGTGACCAAGTTCTACACAGCTCCCACAGCCATACGCCTCCTGATGAAGTACGGATTAGATCCAGTACAgaaGTACGACCTGTCATCGCTGAGGATTCTGGGTACTGTAGGTGAGCCCATCAACCCGGAGGCGTGGCATTGGTACCACGAGGTGATTGGTCAGAAGAGATGCCCTGTGGTGGACACCTTCTGGCAGACCGAGACGGGTGGCCATGTTTTAACTCCTTTACCTGCCGCTACACCTCTGAAACCTGGATCAGCTACGTTTCCTTTCTTTGGCGTGGAGCCTACCATACTGAACGAGCATGGAGAGGAactggagggagaggcagagggctATCTGGTGTTCCGTCGGCCCTGGCCTGGTATCATGCGTACCTTGTACGGAAACCAGGAGCGATTTGAGAACACTTACTTCAAGAAGTTCCCAGGTTTCTACGTGACCGGGGATGGCTGcaggagggatagagatggataCTACTGGATCGCAGGCAGGATAGATGACATGATCAACGTATCAGGTCACCTGTTGAGTACAGCGGAGGTAGAGGCATCTCTAACAGACCACGGAGCGGTGGCCGAGGCTGCTGTGGTCAGCAGACCCCACGCGGTCAAGGGGGAGTGTCTCTACTGTTTCGTTACTCTGAAGGACTGCAGAGAGTTCAACCGCACTCTGGTGGACGAACTCAAGAGACAAGTGAGGGAGAAGATTGGTCCGATCGCCACCCCAGACTTCATCCAGAATGCTCCTGGACTTCCTAAAACACGATCTGGTAAGATCATGAGGCGGGTCCTGAGGCAGATCGCCCGGAACGAGAAGGATCTAGGTGACCTTTCAACTATGGCTGACCCCAAGGTCGTAGAGGTCCTGTTCAACCACCGCTGTGAAACGGCCTCTTGAGGGGGCTGCATGTCAACACTACAGTAGCTTCCTCTCCTCGacacctcatctcctctctttgtctcctcATTTCCTCTATATCATCCACACCGATCTGAAAACTATGGAAGCCCATTCCTGCCACcaactcttaaaaaaaaaaaaaatgttttttaaaaataataGAACATACAGgatatatttcttaatttttAGCAGTATGTGCACATTTATTTCCATCTGTCCACGTTGCAGGGTGGCCGGAAGATGTGTGGCGAGCTGGCATTTACCCCAACACTTTTTCAATTcggtttaataaaaaatattgaCACAAAA

Function

NR:

description
acetyl-coenzyme A synthetase, cytoplasmic-like

GO: NA

KEGG:

id description
K01895 ACSS1_2, acs; acetyl-CoA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986662.1 False 2523 mRNA 0.51 19 88017220 88059703
XM_036986659.1 False 2559 mRNA 0.50 19 88017227 88059703
XM_036986661.1 False 2647 mRNA 0.50 19 88017456 88059703
XM_036986660.1 True 2513 mRNA 0.51 18 88026784 88059703

Neighbor

gene id symbol gene type direction distance location
LOC110513441 apcdd1 coding upstream 241773 87745792 ~ 87775447 (+)
LOC110512127 LOC106591122 coding upstream 325477 87687931 ~ 87691743 (+)
LOC110512128 LOC106596732 coding upstream 346116 87569072 ~ 87671104 (+)
LOC110519501 LOC106569361 coding upstream 467382 87532950 ~ 87549838 (+)
LOC110530822 LOC106596771 coding upstream 610775 87003179 ~ 87406445 (+)
LOC110510807 LOC106569716 coding downstream 565738 88625441 ~ 88642762 (+)
LOC110510805 LOC105030507 coding downstream 586697 88646400 ~ 88667320 (+)
LOC118965580 NA coding downstream 827131 88886834 ~ 88903834 (+)
slc25a24l LOC106569755 coding downstream 1014921 89074624 ~ 89139486 (+)
fubp1 LOC106569753 coding downstream 1035133 89094836 ~ 89113049 (+)
G758954 NA non-coding upstream 6601 88001546 ~ 88010619 (+)
G758989 NA non-coding upstream 18372 87997243 ~ 87998848 (+)
G758965 NA non-coding upstream 34924 87937191 ~ 87982296 (+)
G758976 ankrd12 non-coding upstream 51295 87959523 ~ 87971929 (+)
G758974 NA non-coding upstream 58821 87957906 ~ 87958399 (+)
G759016 NA non-coding downstream 12126 88071829 ~ 88072091 (+)
G759017 NA non-coding downstream 17537 88077240 ~ 88077597 (+)
G759018 NA non-coding downstream 18379 88078082 ~ 88080468 (+)
G759019 NA non-coding downstream 21277 88080980 ~ 88081831 (+)
G759020 LOC106569827 non-coding downstream 22318 88082021 ~ 88106947 (+)
G758988 NA other upstream 22075 87991970 ~ 87995145 (+)
G758892 NA other upstream 140536 87875120 ~ 87876684 (+)
G758866 NA other upstream 284081 87732294 ~ 87733139 (+)
G758531 NA other upstream 299502 87716817 ~ 87717718 (+)
G759031 LOC106569827 other downstream 49303 88109006 ~ 88110300 (+)
G759556 NA other downstream 638271 88697974 ~ 88701419 (+)
G759598 NA other downstream 801376 88861079 ~ 88861828 (+)

Expression


Co-expression Network