LOC110509139 (rab12)


Basic Information

Item Value
gene id LOC110509139
gene name rab12
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88342455 ~ 88362306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986670.1
TTGCAGAACGGTTTGTACTGAACGACACGTTTCCCAAAAACGGTATTGTACGTCCTTGAACAGACTTAAGCCAACTAACTAAGGAAGGGTTATGTTTGCTACCGTTTGGTGGTGTGGCGACTGGCCATACTGACAGGGTTTCCCTACCCATAACCCTTCCCCGTTAATCAACCGGTCGGTCAGTACATCGGCATTTCAGTTCAATTAAAAGTTTCCGAACGTAAAAACGTACTGAACGCAGCCCTTGATTCTCTTGACAAGCAGCTGAACAATTTGGAAACTTTCCCGAACTAACTCAAAGACAAAAGGAAAAATTACTAAAAGTAGGGCCTACATCGTTATTTTCTCTTTTAAAAACGTGTCTAGGTGTTCAAATGTGGAATTATTGATGGATTCACGGTATGAAATCCAACGGAGGGCCGGTGGTGGATCAGCGAACGCTTCCCCGGCTCTGGGGGCACAGTCTCGCCGCAGGAAGATGCCTCCCAGACCTGCCGATTATAAACTTCAGATCATTATCATTGGCTCCCGTGGAGTAGGCAAAACCAGTCTAATGGAAAGGTTTACCGACGACACCTTCTGTGAAGCATGTAAATCAACCGTTGGAGTAGATTTTAAGATCAAGACGGTGGAGCTGAGAGGGAAGAAGATCAGGTTGCAGATCTGGGATACAGCTGGTCAGGAGAGGTTCAACAGTATAACCTCAGCCTACTACCGCGGGGCCAAAGGAATAGTACTGGTCTATGACATCACCAAGCAGGAAACGTTTGACGACCTTCCCAAGTGGATGAAGATGATCGACAAGTATGCTTCAGAAGAGGCAGAGCTGCTGCTGGTGGGGAACAAGCTGGACTGTGAGACGGACCGCATCATCACTAAACAGACTGCGGAGAGGTTTACCTCTAGGATATCTGGGATGCGTTTCTGCGAGGCTAGTGCCAAGGATAACTTTAACGTGGAGGAGTGCTTTCTAAAACTAGTGGACGACATTCTAGCAAAGATGCCTCTAGAGATTCCCAACAGGAAGCTCTCCAACAGCATCCTGTCTCTGCAGCCTGAACCAGAAGTGCCTCCCGAGCTCAACCCGCCACGCATGCACTGTTGCTGAGATGACTCCCCTCTCAACTCTCCACCACATCCCCCTCGACTACACCCCCCTCGACTACACCCCCCTCGACTACACCCCCCTCGACTACACCCCCCTCGACTACACCCCC

Function

symbol description
rab12 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including cellular response to insulin stimulus; protein localization to plasma membrane; and secretion by cell. Predicted to act upstream of or within Rab protein signal transduction. Predicted to be active in Golgi apparatus; cytoplasmic vesicle; and plasma membrane. Is expressed in hindbrain; neural crest; and pharyngeal arch. Orthologous to human RAB12 (RAB12, member RAS oncogene family).

NR:

description
ras-related protein Rab-12

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07907 RAB12; Ras-related protein Rab-12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986670.1 True 1217 mRNA 0.49 6 88342455 88362306

Neighbor

gene id symbol gene type direction distance location
LOC110518901 LOC106596607 coding downstream 10960 88077201 ~ 88331495 (-)
LOC110530857 ndufv2 coding downstream 325352 88002853 ~ 88017103 (-)
LOC110531046 ankrd12 coding downstream 341335 87944259 ~ 88001120 (-)
LOC110530858 NA coding downstream 398842 87940808 ~ 87943613 (-)
LOC110530873 LOC106596679 coding downstream 408450 87891226 ~ 87934005 (-)
LOC110531049 LOC106591876 coding upstream 17631 88379937 ~ 88570992 (-)
LOC110530889 LOC103396682 coding upstream 309159 88671465 ~ 88819127 (-)
LOC110530888 LOC106569654 coding upstream 465765 88827984 ~ 88833229 (-)
pak1ip1 pak1ip1 coding upstream 472251 88834557 ~ 88846601 (-)
LOC110530885 LOC106569697 coding upstream 502255 88864561 ~ 88883016 (-)
G759349 NA non-coding downstream 1095 88338494 ~ 88341360 (-)
G759346 NA non-coding downstream 7772 88333097 ~ 88334683 (-)
G759310 NA non-coding downstream 31886 88302646 ~ 88310569 (-)
G759327 NA non-coding downstream 58153 88282561 ~ 88284302 (-)
G759315 NA non-coding downstream 85284 88256778 ~ 88257171 (-)
G759364 NA non-coding upstream 7696 88370002 ~ 88370786 (-)
G759371 NA non-coding upstream 11938 88374244 ~ 88374566 (-)
G759378 NA non-coding upstream 16667 88378973 ~ 88379339 (-)
G759421 NA non-coding upstream 68692 88430998 ~ 88443468 (-)
G759422 NA non-coding upstream 69735 88432041 ~ 88438241 (-)
G757788 NA other downstream 2110263 86230374 ~ 86308150 (-)
G757422 NA other downstream 2478568 85863011 ~ 85863887 (-)
G757292 LOC106569817 other downstream 2587217 85703130 ~ 85756434 (-)
G756981 NA other downstream 2927753 85413431 ~ 85414702 (-)
G759982 NA other upstream 173334 88535640 ~ 88536047 (-)
G759998 NA other upstream 301298 88638913 ~ 88667229 (-)
G760051 NA other upstream 340685 88702991 ~ 88704054 (-)

Expression


Co-expression Network