LOC110531049 (LOC106591876)


Basic Information

Item Value
gene id LOC110531049
gene name LOC106591876
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 88379937 ~ 88570992 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986896.1
atgcgTAATGGGGTCCACGGCCACACGGGGCGCCTGCTCATGTCCCTGTGCTTCAGCAGTCTCAGCTTCCTGCTCTTCCACATCATCTATCAGATCACTGTCAACAGTCTACTGGCCGGGAACAACATAGACCGCGCCTTCAACTGTTCAACGTGGGAGAAATCTATACGTCAGATTGGCTTCGAAAGtGTGATAGGTGCAGATGCAGGGAACGGTATCCGTGTGTTCCTCCCTGACATAGGGATGTTCCTAGCAGGGCTGGCCTGCTGGCTGCTGTGTCGTAGTCTGTTTCAGAAGAGACCGCCAGAGGACATGGCCCAGGATAACACTGACTACGAACCGGAGGGAGAGgaggaagaggagaagctgAGCCTTGATGACAACGTCCTGTTGGATGAGGACTTTGAGGCTGGGTACGAggctggagaagaggaggaggaagagatggaggaggaagagggggaagatgatgaagaggaggaggagagcaacaAGATGAAGATTCTGCGTCACATTGCGGGTGTGGCGTCTAAAGTGAAGGAGATCATTGGGAATCTGATCACCACCGCGGGAAAAGTGGTGGTCACTATACTGTTAGGAGTCACAGGTATCACGCTGCCCTCCCTGACGTCGGCGGTCTATTTCTTCGTGTTCCTGTTCCTGTGTACGTGGTGGTCGTTCTGCCGCACCTTCGACACCCTCATCTTCAGCTGTATGTGTGTCCTCATGGCCATATTCAGCGCTGGACACCTGGTCGTCCTCTACCTCTATCAGTTTCAGTTCTTCCAAGAGAGCATCCCTCCAGAGGACAGCTACATCAGTCTGTTCGGCATCTCATCCATCATCCAGACTGACTGCTCCTCCACGTGGAGGATGATAGTTAACCCTGATCTGGCCTGGCACCACTTTGTTAACCCCattatgctgctgctgctgtactACACCCTGGCCACTCTCATACGCCTCTGGCTCCAGGAACCTATAGAGGAACCTATAAAGGTAGGTAACACCCTGGCCACTCTCATACGCCTCTGGCTCCAGGAACCTATAGAGGTTGGTAACACCCTGGTATCTCTCATACGCCTCTGGCTCCAGGAACCTATAGAGGAACCTATAGAGGTTGGTAACACCCTGGCCACTCTCATACGCCTCTGGCTCCAGGAACCTATAGAGGAACCTATAGAGGTAGGTAACACCCTGGCTACTCTCATACGCCTCTGGCTCCAGGAACCTATAGAGGTAGGTAACACCCTGGTATCTCTCATACGCCTCTGGCTCCAGGAACCTATAGAGGTAGGTAACACCCTGGCCACTCTCAAACGCCTCTGGCTCCAGGAACCTATAGAGGTAGGTAACACCCTGGTATCTCTCATACGCCTCTGGCTCCAGGAACCTATAGAGGTAGGTAACACCCTGGCTACTCTCATACGCCTCTGGCTCCAGGAACCTATAGAGGAACCTATAGAGGTAGGTAACACCCTGGCCACTCTCATACGCCTCTGGCTCCAGGAACCTATAGAGGTAGGTAACACCCTGGCCACTCTCATACTCCTCTGGCTCCAGGAACCTATAGAGGAACCTATAGAGGTAGGTAACACCCTGGCCACTCTCATACGGCTCTGGCTCCAGGAACCTATAGAGGTAGGTAACACCCTGGTATCTATCATACGCCTCTGGCTCCAGGAACCTATAGAGGAGGATGAAGACGAGGAGGGAGAGgacggagaggaagaggaggaggtggttggGAACGGCACCAGGAACTCTGCGGACAAGAGGAGACAGCTGTGGTGGAAAGCTCACCAACGCACAGAGGAAAGAAACGGGTTGGCTGCAAAGTCCAACGGGACGTCTTGTGACATCTCCACCCTAAACTCGGTGGAGAATAGACCGGTCGGTCTGGACCTGTACTCCACCCCACAGTATAAAATGGACCAAACCAATAACATTACAGagaagaagaatggAAGTGTGTATGACGTCAATCCAACAGTGGGAGGAGAGACTgctgggatggaggaggaggaggagaagaaggaacagggcgatgaggaggaggaggaggaggagaaggagggcagAGTGAATGCTGTAGTAACAGTGTTCAGGTTCATTATGAAGCAAAGCTATATCTGTGCTCTCATAGCCATGATGgCGTGGAGCATCACGTATGTTAGCTGGCTGACGTTTGTGTTCCTGATGTGGTCGTGTATGTTGTGGATGGTGAGGGACCGTCGTCGTTACACCATGCTAACCTCTCCCTTCATGGTGCTCTACGGGAACCTGCTCATTGTGCTGCAGTACATCTGGAGCTTTGAGCTGCTGGAGCCCGTACCTGGACTCTTCCTCAAGAAGGACGTGCCCTTCAGTGAACTGGGATCCAAGGTCCTGTGTCTGTTGAGCTTCTGGCTGCTGCTGAGACAGACTCTGACAGAGAGAAATGacaagcagagagaggaggatgctGTACTCACTGACGTACATGTGGATGACCAACCAAAGAAGAAGGaggaggatgaggaaggaggggagcaggacaTCATGCAGGTTCTGGGGAACATGGTGATGGAGATGCTGGTGAAATACTGGATCTATATCTGTGGAGGGATGTTCTTCTTCGTCAGCTTCGAGGGACGCATGGTCATGTATAAGATCATCTACATGATGCTCTTCCTCTTCTGTGTGGCGCTCTATCAGgTGCACTATGAGTACTGGAGGAGGATCCTGAAGTACTTCTGGATGTCTGTGGTGGTCTACACCATGCTGGTCCTCGTCCTGGTCTACACCTTCCAGTTTGAGACTTCTCTACCCTTCTGGTCTAACATGACTGGCATGAGCGAAGAGAAacTGAAGGACCTGGGGCTAGAACAGTTCTCCGTATCGATGCTCTTCACACGTATCTTCATCCCCACCTCCTTCCTCCTAGTGTGTATCCTCCACCTTCACTACTTCCACGACCGCTTCCTGTTGCTCACTGACCTGAAGGCTGTGGCCCAAAAACAGGACAGCACCATCTACAGaCTGGTACACCAGGATGGAAGCCTGGCTGACATCACCATGCTCAGCATCTCTTCTGGAGAAGGAGTGATACGAGCAGACgacaagaaagagaagaaggagaaggagggaacCCTGGTGGTGGTGAtgcaggagaaagagggagggatgaagcaGAAAGGAGGACCCCATCAGTCTATAGACCTGCGTCAGTCATTCGGAAAGTCGTTTGAGTTGCATCAGTCGTTCCAGAAGTCGTTTGAGTCCAGTGCAGGGTCGGGCGGGAGTGGCCACTGCAGTGTGGGAACTGAGCCAGATCCCTCCACAGAAAACACTACCTCAGACCTAAAGAATAAATGGCACCTGGTGGTGGACCGTCTGACTGTGCTGTTCCTCAAGTTCCTGGAATATTTCCACAAGCTGCAGCTCTTCATCTGGTGGCTCCTAGAGATACACATCATCAAGATCGTCTCTTCGTATATCATACTGGTCTCTGTCAAGGAGGTGTCCTTGTTCAACTACGTGTTCATGGCGTGCTGGGCCTTCGCTCTACCCTTCAGTCAGTTCAGACCCCTGGCCTCCAGTATCTGTACAGTCTGGACCTGTGTTATCATCGTCTGTAAGATGTTGTACCAGCTGGAATCTATACAACCTGCCTCTTACTCCAAGAACTGCTCCATGCCAATGAactacacagacaaacagagagaagagatgaaAGACTCTCTGCTGTACAAGGAGCCAGTAGACCCTTCCAACTGGGTCGGACTCAACAAATTCAACCCTCTACTGGAGAACCTTAGGAACAACCTGCTGATGTTGGCCATGCTGGCGTTTGAGGTGACCATCTACCGTCACCAGCTGTACTACAGGCTGAGGAACAAGCTCACCGCGCCCGCCGCTCGCATCATCTTCCATGACATCACGCGGCAACACCTCGACAACGGCATCGTCAACTGTGCCAAGTACTTCATCAACTACTTCTTCTACAAGTTCGGGCTGGAGACATGCTTCCTACTGGCGGTGAATGTGATTGGCCAGCGTATGGACTTCTATGCTGTGCTGCATGCCTTCTCTCTGATAGCCGTGATGTACAGACGTAGGAGGAAAGCTATAGCTGAGATCTGGCCTAAATACTGTTGTTTCCAGGCCTGTATTCTAACCTGGCAGTACTTTGTGTGCATTGGGATACCACCTGCAGCTTgcaaagACTACCCATGGAGGTTCCCTAACTCTGCAATGGACTCCAACGTCATCAAGTGGCTTTATTTCCCTGACTTCCACACCAACCCCAACCCAATCTTTCTCGTCTatGACTTCATGCTCCTCCTCTGCGCCTCACTCCAGAGGAGTGTATTTGATGAGGAGAACAAGGCAGCTGTCCGTCTCATGGccggagacaacgtggagatctGCAGAGACCTAGACGCGGCCTCGTTCAGCGTTCACAACCCTGTGCCTGACTTCATCCACTGCAGATCCTACCTGGACATGCTGAAGGTGATCATGTTCAGCTACCTGTTCTGGTTCGTCCTCACCATCATCTTCATCACCGGCACCACGCGTATCAGCCTCTTCTGTTTGGGCTATCTGGTGGGATGTTTCTACTTCCTGCTGTTCGGCGGGGAGCTGCTGCTCAAGCCAATCAAAAAGATCCTACACTACTGGGACTTCCTGATCGCCTATAACGTGTTTGTGATCACCATGAAGAATATCCTGTCTATCCTGGCCTGTGGCTACATCAATGTCCTGGTGGTCAACAACTGTTGGCTGATCCAGCTCCTCAGTCTGGCCTGCACCATCAAGGAGTATAAGATCGTCACTAACAGAGACATCACACCTGCGGACGGTGGTAAGAAGTGTGATCTGCCCAGCGACGAGGCTGGGATCATCTGGGACAGCATCTGTTTTGCCTTCCTGCTGTTGCAGAGACGCGTCTTCATGAGTTACTACTTCTTACATGTGGTGGCTGACATCAGGGCCTCACAGATACTGGCCTCCAGaggagCTGAATTGTTCCAGGCTACTATAGTGAAGGCAGTCAGAGCCAGACTGGAGGAAGAGAACAAGTCTATGGAACAGCTGAAGAGACAgatGGACCGTATAAAGCAGCGCCAGGAGAAGTTTAAGAGTGGGAAGAAAAAGATGTTGAGCCTGGCCCAGGAATCTGGGGACAGAGAGAACCCCATCCAGCCACAGGAATCTGGGGACAGAGAGAACCCCATCCAGCCacaggagcaggaggaagaggatgatgGagcagagcgagaaagagagaaagagaaagtgaaagagaaagaaacagccAAGACTAAAAAAAGGCAGTGGTGGCGGCCTTGGGTTGACCACGCCTCCATGGTGAGGAGTGGAGATTATTACTTGTTTGAAACTGacagtgaagaagaggaggaagaggaggagaaaagagaggatcAAGAGCTGCCCAAGAAGTCAGCATTTCAGTTTTTCTACCATGCCTGGATAACAGACTCCAAGACAGCCATGAAGGAACGAGGCAAAGAGAAGCGTAAGTTCTGGAAGAGGTACACCAAGAGAGACAAACACAAGAAGGACAAGAAGGAAGGTCATGTGACTATAGAGATGGAGGAAGATCAGGAGGGAACACAGGAGAAGAAGTCTGACGGACCAGACAACGTCTTGAAGCGAGTGTTCAACATCATCAAGTTCACCTGGGTGTTGTTCCAGACCACGGTGGAGAGCTTCACCAAGTGGATGAACAACGTGTGTAGAGAACACATAGACATCTCCACCGTGCTGCGCATTGAGAGATGCATGCTCACTAGAGAGGTCAAAAAGGGCAACGTCCCGTCCAGAGAGAGTATCCATGTGTTCTACCAGAAGCAGATGCGTATGAGCATGTCTCGGGGGTCCAGCCTGGACCGGCTCAGTGAGGAGGACAGTGCGTCGGGGGGGTCTCACAGGGTCCACAGGAGGAGAGGCGACTATCGCATGGAGAGCCAGGACAGCATGGCATCGTTGGCATCACGAGACAGCATATCTAGTGCCTACACTGAGGCCACCATGCTGTTCTCCCGCCAAGACACGCTGGACGAGCTGGACGGAATGCCGTCAGACGTTCCCATTCCCAAAACCAGTGAACGTGCCCGGCCAAAACTCCGTAAGATCTACGGCCTGGACGCCTCCAAATCAActgacagcagcagcagccaagTGTCCAGtGAAACGACCCAGTGCATCACTCTGTACTCCCGGCAGGGCACCACCGACACCATTGAGGAGGTGGAGGACGAACAGGACcagggggaaaacaggctgcACGGACCCTGGGAACACCCACCTCCGGAGGGGTCAGAGGGGGCTGAAGACAGCCCCTGGCGGGGTGGAGGAGATGGTGGTGATGGAGAGACCACAGAGGAGAGGGAGCGGTACCAGGGCCAGGGGGATCCATGGGGGTCTCCAGGCCCAGGGGAGGGCCCCTCCTTCAGGGTAGAGGAAGGAGCCTCAACCCTCCTGGCCCTACGAGAAGGGTCCCGACCAGGGTCCCAGGACTGTACCACTGACAGTGACGACGGGGGTGTCCAGGACCGGCAAGAATACTTGAATAGGGAAGAGCGTGACCGGGCGGGGTTGCTGTACACCCCAGACACGGACGCTCCAAACACCTCGGATGCTGATGTGCCTCCCAGCTACAGCAAGGCGGTGAGCTTTGACCGTCTGGAGGTGAGTGAGGATGAGAGCGACAGGGACGACAATAGGATGATGGCGATGACCCCAGACACCAGCCGGTCAGACTATCTGGACGACCCTTTGCTGCCCTCACTGACCACTGAGCTGACCGCCAGCGAACTGCTGCTCAACAAGATGTTCCATGATGAGGAGCTAGAGCGGTCGGAGCGGTTCTATGTGGGCCAGCCCCTGGTGCTCCAGTTGGTCTATGCCCTGTATAACATGCTGGTGGCCCACTCTGAGATGGTGTGTTACCTAGTCATCATCCTCAACAACATGCTGTCAGCCTCCTGCGTCACCCTGGTCCTCCCCATCCTCATCTTCCTCTGGGCCATGCTGTCGGTACCTAGACCCAGTAAGAGGTTCTGGATGACTGCCATCGTGTACACTGAGGTCACCATCGTCATCAAGTATTTCTTCCAGTTTGGCTTTTTCCCCTTCAACCAGAACCCGAAGGTGGACGTGAACAAACCCTACCACCCTCCAAACATCATTGGAGTGGAGAAGAAAGATGGATACGTCGTCTATGACCTCATACAGCTTCTGGCGCTCTTCTTCCACAGGTCCATCCTGAAGTGTCATGGTCTATGGGACGAAGACAACCTTAAGGACACCAAGAAGGAGATCCTCCGCAGGGACACTGAGTCAGAGGAcgatgagaggagggagatggaggccACTCCCGTCCCTTCCACCCCCCGCGAGAGGAAGGGGTCCACACAGACCCTCAGGTCTATAAACCTGGGCATGGGCACCTCCGTGGACTCTGTACACGTCCCCATGCACAACCTCCAGCAACAGCAGCAGACCTACCAGAGGAGAAAGAGCTCCAGTGGAGGGTCTCATATCTCCCACCGCTCAGTCCACTCTGTACGCTCCAAGAGAGGCAGCACTAACTCCAGGAACAGTAGCCATAGAGACGGGAGCGAGTCAGTGCAGCAGAAGACTAAGAAACAGCTGATCAAGGAGAAAATCAGAGAACAGATGATCAAAGCCAAGACCTTCACTATCAAAAGGACCATGGAGGTGTACCTGCCCATCCGTCAGTTCTTCTACAACCTGGTCCATCCAGAGTACAGCGCTGTAACAGACGTCTATGTTCTAATGTTCCTGGCCGACACCGTCGACTTCATCATCATCGTCTTCGGCTTCTCTGCTTTTGGGAAACACTCCGCGGGAGCAGACATCACGTCGTCCCTGTCGGAGGACCAGGTTCCCGGAGCCTTCCTGGTGATGGTACTGATCCAGTTTGGGACCATGGTGGTGGACCGGGCCCTGTACCTCAAGAAGACAGTGCTGGGGAAGGTCATCTTCCAGGTGATCCTGGTGTTCGGGATCCACTTCTGGATGTTCTTCATCCTGCCCGGAGTCACTGAGAGGCGTTTCAATGAGAACACAGTAGCCAAGCTATGGTACTGTATCAAGTGTATCTACTTTGGGCTGTCAGCCTATCAGATCCGCTGTGGCTACCCCACCAGAGTCCTGGGTAACTTCCTCACCAAGAGCTACAACTACGCCAACCTCTTCCTGTTTCAAGGGTTCCGTCTGATCCCGTTCCTGACTGAGCTGCGTGCGGTGATGGACTGGGTCTGGACCGACACCTCTCTGTCTTTATCCTCTTGGATCTGTGTGGAAGACATCTACGCTCACATCTTCGTCCTCAAGTGCTGGAGGGAGTCAGAAAGGaGATACCCCCAGCCGCGAGGCCAGGCGAAGAAGCCGGTGGTGAAGTATGGGATGGGAGGGATGATCGTCATGCTTCTGATCTGTATCATCTGGTTCCCTCTACTCTTCATGTCTCTGGTCAAGTCTGTGGTGGGGGTGGTCAACAAACCACTGGACGTCTCCTTCTCCATCACCCTGGCCGGGTTCCAGCCCATCTTCACAATGAGTGCTCAGCAGAACCAGCTCAGAGAAGTCTCCAACCATGAATTCCATAACACATTCATGAGGTCATACCTCAGCGATCCTGAAGCGATGCAGTGGTTGGAGTCCTACATGCCAGAGGACCTGACCATAGCTGAGTTGGAGGGCAGCTCTAACAGTCTGTGGACCATCAGTCCTCCCAGTAGAACTAACATCATGAAGATGCTCAGCTCCAAGGAGCAGTTCCCCATCACTGTAGCTTGGTCTATCCAGCGGAACCCGACTCTGGGAGCGAAGGCTGAGTTTTCTACGGGGAAGAAGGTGATGTTTCTGGATGATAAAACCAAGCTGGAGCTATTCCTACTGCTCAATGGGACCAGAAAAGATGGAGTGGTGATAAAACATGGCTTCCAACGGTATCTCCGAGCCCCTACTGACTCTGAGGCCAAACCCATAGAACAGCTGTCTACAGAGGAAGTAGCCATCACTTTGGCATTGGAGCGTTTACATAACGACTCAGAGGGGGTCCAGGAGTGGTGGATCGTGAACCAGACTAGTCCGGGAAAGATCAACGTTCGTAGCCCCAAGAATCTGTACAACGCTGGGCTGGAGCTCTATGTCTTCAGCGATCAGGTCAGCCCTCCTAGTCTGGGCTTTCTGGCTGGATACGGgatCATGGGTCTGTACGCCTCTGTGGTGCTCGTCATCGGTAAGTTCGTCCGTGAGTTCTTCAGCGGTATCTCTCACACCATCATGTTCGAGGAGCTGCCCAACGTGGACCGCATCCTGAAGCTCTGCACCGACATCTTCCTGGTCCGAGAGACGGGAGAGCTGGACCTGGAGGAAGACATGTACGCTAAACTCATCTTCCTCTATCGCTCGCCTGAGACTATGATCAAATGGACCAGGGAAAAGACTCAGTGAGCTTAGCTGTAAAAGGCTAGAAGTTTCAATCCCCTTTCAATGTGGATAGAAGTTTAAAAGTATTAACCTCCCACTGGTCTCTGGGATGTTGAAGTTATGGATGGACTCGATCAGTCCAGACAGACCGTTTTTTGCTGACACTTTAGTCAGTTCTTAACTGTTAGTCATTTTTATGGAAGTAGACCTCCGAGGAGGAAGGAAGGGCCAAAGCTTGCCGGCCCCTGTTGCAACTAAAAAAAGAAACACTGGGTTCTTCGAtttcatttcagcaagccatgacaccgaCCATCTCAGATTTTTCTGAAATAGTCTGTAGTTTGATAAAGATGATATAaacattcctgcaacattattttgttgaaagacAATTTGaaatctgagaaattaagctaattgattgcacacAAATCATCAATTTCAATTTAAATACCAAACATCCAATTTGGACCAAACCACTTATTTGGATTTGTTTGGTGGGGGTATAAACATCTAGTTTATACCACATGTACCCACAGCCAAACATCACCCCCAactccccatcccattcccccagcACAACATCACCCCCAactccccatcccattccccccagCACATCACCCCCAactccc

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: piezo-type mechanosensitive ion channel component 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986896.1 True 10106 mRNA 0.52 57 88379937 88570992

Neighbor

gene id symbol gene type direction distance location
LOC110509139 rab12 coding downstream 17631 88342455 ~ 88362306 (-)
LOC110518901 LOC106596607 coding downstream 48442 88077201 ~ 88331495 (-)
LOC110530857 ndufv2 coding downstream 362834 88002853 ~ 88017103 (-)
LOC110531046 ankrd12 coding downstream 378817 87944259 ~ 88001120 (-)
LOC110530858 NA coding downstream 436324 87940808 ~ 87943613 (-)
LOC110530889 LOC103396682 coding upstream 100473 88671465 ~ 88819127 (-)
LOC110530888 LOC106569654 coding upstream 257079 88827984 ~ 88833229 (-)
pak1ip1 pak1ip1 coding upstream 263565 88834557 ~ 88846601 (-)
LOC110530885 LOC106569697 coding upstream 293569 88864561 ~ 88883016 (-)
LOC110530884 LOC106569698 coding upstream 334320 88905312 ~ 88919239 (-)
G759378 NA non-coding downstream 598 88378973 ~ 88379339 (-)
G759371 NA non-coding downstream 5371 88374244 ~ 88374566 (-)
G759364 NA non-coding downstream 9151 88370002 ~ 88370786 (-)
G759349 NA non-coding downstream 38577 88338494 ~ 88341360 (-)
G759346 NA non-coding downstream 45254 88333097 ~ 88334683 (-)
G760001 NA non-coding upstream 19949 88590941 ~ 88597105 (-)
G760003 NA non-coding upstream 29992 88600984 ~ 88603305 (-)
G760012 NA non-coding upstream 50390 88621382 ~ 88621655 (-)
G760017 NA non-coding upstream 60757 88631749 ~ 88633583 (-)
G760019 NA non-coding upstream 63854 88634846 ~ 88636384 (-)
G757788 NA other downstream 2147745 86230374 ~ 86308150 (-)
G757422 NA other downstream 2516050 85863011 ~ 85863887 (-)
G757292 LOC106569817 other downstream 2624699 85703130 ~ 85756434 (-)
G756981 NA other downstream 2965235 85413431 ~ 85414702 (-)
G759998 NA other upstream 92612 88638913 ~ 88667229 (-)
G760051 NA other upstream 131999 88702991 ~ 88704054 (-)
G760165 NA other upstream 446057 89017049 ~ 89017979 (-)
G760182 LOC106569755 other upstream 508306 89079298 ~ 89081345 (-)

Expression


Co-expression Network