pigk (pigk)


Basic Information

Item Value
gene id pigk
gene name pigk
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89296952 ~ 89321553 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986722.1
TGATATCATCAAAGAAGAAGAAGCACTACGTCATCTGAGGGCGATAGCTCTTCCTGTAGTAGCAACATGGCTAGCTGCTGTTCCCTGAAAGTATTGACACTTTTCAGCCTGTTTATTGTTCCTGGCGCGGTGGAAAGTAATAATATCGAGGCTAAAGCTGGTCAATTCTTCAGCAGTGGACACACAAACAACTGGGCAGTTTTGGTGTGCACATCCAGATTCTGGTTCAACTATCGTCATGTGGCCAACACACTATCTGTGTACCGTAGTGTCAAGAGACTGGGCATCCCAGACAGtCACATAGTTTTGATGCTGGCAGACGACATGGCGTGTAACCATAGAAACCCGAAGCCGGCCACGGTGTTCAGTCACAAGAACATGGAGCTCAACGTGTATGGAGATGACGTAGAGGTGGATTACCGTGGTTACGAGgtgACCGTTGAGAACTTCCTTCGTGTGCTGACGGGAAGGCTGCCACCCAGCACGCCGCGGTCTAAACGCCTCCTCTCTGAcgaccacagcaacatcctcaTCTACCTCACTGGTCACGGTGGGAACGGCTTCCTGAAGTTCCAGGACTCTGAAGAGATCAGCAACGTGGAGCTGGCCGACGCCTTTGAACAGATGTGGACAAAGAGAAGGTACAATGAGCTGCTGTTCATCATTGATACTTGTCAGGGAGCCTCCATGTATGAGAGATTTTACTCTCCTAACCTCATGGCCCTGGCCTCCAGTCAAGTAGGAGAGGACTCCCTGTCGCACCAGCCAGACCTGGCTATCGGGGTCCATCTAATGGACAGGTATACATTCTACCTGTTGGAGTTTCTGGAGGATATTCACCCTGCTAGCACCGCTAACATGAATGATCTGTTTAAGGTTTGTCCTAAGAGTCAGTGTGTGTCCACTCCGGGCCACCGTACAGACCTTTTCCTCCGGGACCCCGGAAACGTCCTCATCACCGACTTCTTTGGCAGTGTCCGTAAAGTAGAGATCACCATGGAAACCATTAACCTGACAGCTCCCATGGTGCATCTGGCTGTGGAAAGACCAGTAAGTGAGCTGAAGACCGAGAGCCAGTCATATGTGGACCAACTACCAGTGGCTGAGATTATACACCAGAAACCAAAGCAGAGGGACTGGCACCCTCCAGATGGTTTCATCCTGGGTTTGTGGACTCTCATCCTCCTGGTCTTCTTCAAGACGTACGGCGCCAAGCACCTTAAGCACATCTTCTAACACCTGACCTTTTGAAGCCCGACCTCTGACCCATTTCTGCTCCTTGTGCAGTTTGCACCAGTTCCCTTGGCTTCCTAGATTTGAAAGAGGACTGGTATAGGACTCATGGTGAATACTCTAAAGCGCAGGCTTTCGTCCATCCGATTATTCTAAATGCGCGGGGAGCACTTCAGGATGAAGGACAGACAATTGGGACGCGGTGTTGGCAAGGTCCCAATCTTCTGGATTACTAGAGAAGACTACAAATACATTATTAACAGGGAATGAATGGCGCAGTCTTTTAGTGGTAATTGCctttctagtcattctatttctatgtttattAACATTATCGAACGGGGCGATCTgtgattggtacatccattttgttattgtttgaagaGCAGATTGTTTATGTTTAAACTCTGAACTGTGTTGGAGAGAATGTGGTGACACAACACCTGACCTGCACAAAGACACACATTGTTGTGCCTTTCTGGACATAAACAGTACTCTGACCACTCTCTATTTATTGTATGGAATCTGGTGAATAGGGGTTTAGAGTTAAAACACAACTGAAGATTAAAGGTTGGAAGCAGCGAATACTGGAAGAAACAATCCTATGTTtgttgtatttttattatttattgttgCATGGTTTAGAATTTTAAAGAGGGAGAACGGAAAAGGAAATTGAGGATAAAATGAAGGGTTAAAAAAGAAATACTGGAAAGCAATGGTCCCTCTCAGGAGagcagacggacggacggatgtGTTCTTTGAGATGGTTGATTGTCTTATTTGATGTCGTTTAAGGAAATGTGTGTGTTCTTTATTCCTTTATTTTGTGTCTGGCAGCAGAGCTGTCTTTTTCACCTCATATCTATAATTAAATTGATGGGACTGAAAGGCACTGAA

Function

symbol description
pigk Predicted to enable GPI-anchor transamidase activity. Acts upstream of or within detection of mechanical stimulus involved in sensory perception of touch and protein localization to cell surface. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of GPI-anchor transamidase complex. Orthologous to human PIGK (phosphatidylinositol glycan anchor biosynthesis class K).

NR:

description
GPI-anchor transamidase

GO:

id name namespace
GO:0050976 detection of mechanical stimulus involved in sensory perception of touch biological_process
GO:0016255 attachment of GPI anchor to protein biological_process
GO:0006508 proteolysis biological_process
GO:0034394 protein localization to cell surface biological_process
GO:0042765 GPI-anchor transamidase complex cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0003923 GPI-anchor transamidase activity molecular_function

KEGG:

id description
K05290 PIGK; GPI-anchor transamidase subunit K

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986722.1 True 2133 mRNA 0.46 11 89296952 89321553

Neighbor

gene id symbol gene type direction distance location
LOC110530860 LOC106569749 coding upstream 5611 89225089 ~ 89291341 (+)
LOC118965581 NA coding upstream 33002 89261614 ~ 89263950 (+)
usp33 LOC106569751 coding upstream 73246 89148990 ~ 89223706 (+)
fubp1 LOC106569753 coding upstream 183903 89094836 ~ 89113049 (+)
slc25a24l LOC106569755 coding upstream 202549 89074624 ~ 89139486 (+)
LOC118965583 LOC106569839 coding downstream 238585 89560138 ~ 89659347 (+)
yipf1 yipf1 coding downstream 469357 89790910 ~ 89837790 (+)
zgc:113691 LOC106569840 coding downstream 531913 89853466 ~ 89854375 (+)
ndc1 ndc1 coding downstream 540268 89861821 ~ 89911594 (+)
best4 LOC106569841 coding downstream 595489 89917042 ~ 89932074 (+)
G759661 NA non-coding upstream 30008 89264748 ~ 89266944 (+)
G759746 NA non-coding upstream 47291 89248480 ~ 89249661 (+)
G759745 NA non-coding upstream 49604 89246325 ~ 89247348 (+)
G759741 NA non-coding upstream 55516 89240459 ~ 89241436 (+)
G759765 NA non-coding downstream 14454 89336007 ~ 89337833 (+)
G759772 NA non-coding downstream 31154 89352707 ~ 89354993 (+)
G759785 NA non-coding downstream 62907 89384460 ~ 89384998 (+)
G759790 NA non-coding downstream 76679 89398232 ~ 89399847 (+)
G759798 NA non-coding downstream 94839 89416392 ~ 89418335 (+)
G759598 NA other upstream 435124 88861079 ~ 88861828 (+)
G759556 NA other upstream 595533 88697974 ~ 88701419 (+)
G759031 LOC106569827 other upstream 1186652 88109006 ~ 88110300 (+)
G759020 LOC106569827 other upstream 1190005 88082021 ~ 88106947 (+)
G759892 NA other downstream 374867 89696420 ~ 89696907 (+)
G760623 NA other downstream 838717 90160270 ~ 90208959 (+)
G760718 NA other downstream 1052534 90362653 ~ 90400472 (+)
LOC110530875 rpl37a other downstream 1378742 90700188 ~ 90709778 (+)

Expression


Co-expression Network