LOC118965583 (LOC106569839)


Basic Information

Item Value
gene id LOC118965583
gene name LOC106569839
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89560138 ~ 89659347 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986724.1
ATGACTTCTGGCTATGCGCATGTAATGGACAGACAAGACTCACTGACGAGCCGCCTGGAGAGCCCGATATCAGCCAAACTGGAAACACTGCAGGCCAAGAAAAACTTCTCTGTCAGCCACCTGTTGGATCTGGAGGAGGTGCGGGAGATGGTAGGGGTTCAGGCCAATGAGAGCGCCGGGGATGCGGGAAGGAGCGTGGTGGAGTCCCCGGGGCTGACCAGCGGCAGCGATACGACGCAGCAGGAGAATGAGCATGTGAGTtctgaggagaagaagaggaagcatCGTCGTAACAGAACAACCTTCAACAGCAGTCAGCTGCAGGCACTAGAGAGAGTGTTTGAGAGGACACACTACCCTGACGCCTTCGTACGGGAGGACCTGGCACGCAGGGTTAACCTCATTGAGACACGGGTACAGGTGTGGTTTCAGAACAGGAGGGCTAAGTTCCGTCGTAACGAGCGTGCTATGCTAGCCAGTAAAAATTCCTCCATGATGAAGTCCTACTCTCGTGACCTCACAGCAGTGGAGCAGCCAATCGCACCTCGACCCAACGACTACCTGTCCTGGGGCTCCTCTTCACCCTACAGTGCCATGGCAGCGTACCCCCCCACATGTTCTCCCACCACCTCAGCCCAGGGGATGAACATGGCTAACAGCATCGCTAACCTCCGGCTCAAAGCCAAGGAGTACAGCCTCAACCAGGTGCCTACTGTCaactgatgaagaggaggaagataaaTGCTTCTCCTAAAGTCTAGAGAGTTCTACAGAGAAATCACGTTTACCAAAGGACGACACAACAAGCAGTTCAAACTGCAGTCTTGGTTTTTAACGGCACGTCACAATGTCAATgaatgtgtttagtgtgtttttatgtgcGTGATCGTCTACAGAAAACTGGTCCTACACGCCAGAGACATTTGAGAGCATATCCTGTCCAGCTAAGTAGCCACGATGGCCAATGAACCAGAGGGTAACTGACTGTATTCATCATTGTTATACAGTTTTACTATCAACGTTCCTCTCCTCACTCTGGCACCAACAGGATATGTGCCACCTTTGCCTTAGAATTTCAGAATTTCAAACATTTGGGGACTTTTGGGAGACTTGTATTGATATCTAAATTTTTGGGCTGGTTTGAAAActtttggaaagttttttttgtttAATTATTTTGAGAACTCTGGACTTATGATGAATTCTAACCCGAAACAAAGACACAAACAGTCAGACAAACttttttaaccctaacccttttcccaGCACTGGCCTGAGGAGCCAAGCCTTCTCTCCTGGGGTTATATGAGGAGCCAAGCCTTCACTCCTGGGGTTATATGAGGAGCCAAGCCTTCTCTCCTGGGGTTATATGAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATGAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCATGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATGAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCACGCCTTCTCTCCTGGGGTTATATGAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAACCTTCTCTCCTGGGGTTATATGAGGAGCCAAGCCTTCTCTCCTAGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGAGTTATGATGGTACTATATGGGACTTGGAAAGAAGCCCGAACAACGTCTTGTCCTGTTAGCATTGTTGgtattattttcttattttcaGTTGGAGACGGTCATCTTTTGTTAATGCCTTACACAGCCACAGCTCGAGCTGATTCAACATGTGTTGATCAACCCCATTAGTCTTTTGAATTGAATAAGGTCTAATAGCCTCTGTTTATATCCTGATATATCTTTAATCGACCCCATTAGTCTGTTTACTAAGGACTAACAGATTAATAGCCTCTGTTTATACCCTGATATATAGTAACGACTCTCTGCAATAAAATAGATGCTGTCATTCACAGAATAATTCACTGTACTGACACCATTAGTAACGACCCTCTGCAGTAAAAGAGATTTGGTCATTCACAGAATACTTCACTGTACTGACACCATTAGTAACGACCCTCTGCAGTAAAAGAGATGTGGTCATTCACAGAATACTTCACTGTACTGACACCATTAGTAACGACCCTCTGCAGTAAAAGAGATGTGGTCATTCCCAGAATACTTCACTGTACTGACACCATTAGTAACGACCCTCTGCAGTAAAAGAGATGTGGTCATTCACAGAATACTTCACTGTACTGACACCATTAGTAACGACCCTCTGCAGTAAAAGAGATGTGGTCATTCACAGAATACTTCACTGTACTGACACCATTAGTAACGACCCTCTGCAGTAAAAGTGATGTGGTCATTCCCAGAATACTTCACTGTACTGACACCATTAGTAACGACCCTCTGCAGTAAAAGAGATGTGGTCATTCACAGAATACTTCACTGTACTGACACCATTAGTAACGACCCTCTGCAATAAAAGAGATGTGGTCATTCCCAGAATACTGACACCATTAGTAACGACCCTCTGCAGTAAAAGAGATGTGGTCATTCACAGAATACTGACACCATTAGTAACGACCCTCTGCAGTAAAAGAGATGCTGTCATTCACAGAATACTGACACCATGTTAGCGCTGCAACGTTGTAGGAGCGTCTCaatgttctaatgatctaaacATTTCAACCTGCAGACTCATAGAGGGAAACATGTCTATAAAGGATTTGTGTTAAATGTGTATTTGTTAGAGAGCTGTATTAGTTTTACAAAaatcatatacactgagtgtacaaaatagtaggaacaccttcctaatattgagttgcgctcTACAAATGAAtatgatccttcgatgtcggctcttcccatcattgtgaagcagaattcaccaagcgttggattgttcacccactaatagggaacgtgagctgggtttagaccgttgtgagacaggttagttttaccctactgatgatgtgttgttgcaatatgGAGACTCTCACGACTCTTTACggcccccacaagtgtcacggaactcatctgaaggtaacctggaaaggctttaaaaaatgaatggaagtatactgaacacaacatgtaaagtgttggtcccatttttgatgagctgaaataaaagatcacagaaatgttccatacaga
>TU863518
GATTATGACTGTGTATTATCACATAAAGGTTCAGGATCTGAAAGCAGAAATTATAATAATATCGAAACTAATTGAAGCAAAAGGCAATCCAAAAGTCTAGAACAAAAACACAATCCACAGTCAACAGTTGGTTATATGTAGCAGGGCTGTAATCAGGATGTATTTGaatctgttctgtactgtactgctctCAATGTGTATAGGGCTACATTTACATATACCTGTTTGTCAGTGTTCATATTGATGTGTGTTTCTCTCTAGATGAGCATGTGAGTtctgaggagaagaagaggaagcatCGTCGTAACAGAACAACCTTCAACAGCAGTCAGCTGCAGGCACTAGAGAGAGTGTTTGAGAGGACACACTACCCTGACGCCTTCGTACGGGAGGACCTGGCACGCAGGGTTAACCTCATTGAGACACGGGTACAGGTGTGGTTTCAGAACAGGAGGGCTAAGTTCCGTCGTAACGAGCGTGCTATGCTAGCCAGTAAAAATTCCTCCATGATGAAGTCCTACTCTCGTGACCTCACAGCAGTGGAGCAGCCAATCGCACCTCGACCCAACGACTACCTGTCCTGGGGCTCCTCTTCACCCTACAGTGCCATGGCAGCGTACCCCCCCACATGTTCTCCCACCACCTCAGCCCAGGGGATGAACATGGCTAACAGCATCGCTAACCTCCGGCTCAAAGCCAAGGAGTACAGCCTCAACCAGGTGCCTACTGTCaactgatgaagaggaggaagataaaTGCTTCTCCTAAAGTCTAGAGAGTTCTACAGAGAAATCACGTTTACCAAAGGACGACACAACAAGCAGTTCAAACTGCAGTCTTGGTTTTTAACGGCACGTCACAATGTCAATgaatgtgtttagtgtgtttttatgtgcGTGATCGTCTACAGAAAACTGGTCCTACACGCCAGAGACATTTGAGAGCATATCCTGTCCAGCTAAGTAGCCACGATGGCCAATGAACCAGAGGGTAACTGACTGTATTCATCATTGTTATACAGTTTTACTATCAACGTTCCTCTCCTCACTCTGGCACCAACAGGATATGTGCCACCTTTGCCTTAGAATTTCAGAATTTCAAACATTTGGGGACTTTTGGGAGACTTGTATTGATATCTAAATTTTTGGGCTGGTTTGAAAActtttggaaagttttttttgtttAATTATTTTGAGAACTCTGGACTTATGATGAATTCTAACCCGAAACAAAGACACAAACAGTCAGACAAACttttttaaccctaacccttttcccaGCACTGGCCTGAGGAGCCAAGCCTTCTCTCCTGGGGTTATATGAGGAGCCAAGCCTTCACTCCTGGGGTTATATGAGGAGCCAAGCCTTCTCTCCTGGGGTTATATGAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTCCTGGGGTTATATTAGGAGCCAAGCCTTCTCTACTGGGGT

Function

NR:

description
paired mesoderm homeobox protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986724.1 False 3755 mRNA 0.46 4 89560138 89575164
TU863518 True 1508 TUCP 0.45 4 89568003 89659347

Neighbor

gene id symbol gene type direction distance location
pigk pigk coding upstream 238585 89296952 ~ 89321553 (+)
LOC110530860 LOC106569749 coding upstream 268797 89225089 ~ 89291341 (+)
LOC118965581 NA coding upstream 296188 89261614 ~ 89263950 (+)
usp33 LOC106569751 coding upstream 336432 89148990 ~ 89223706 (+)
fubp1 LOC106569753 coding upstream 447089 89094836 ~ 89113049 (+)
yipf1 yipf1 coding downstream 215746 89790910 ~ 89837790 (+)
zgc:113691 LOC106569840 coding downstream 278302 89853466 ~ 89854375 (+)
ndc1 ndc1 coding downstream 286657 89861821 ~ 89911594 (+)
best4 LOC106569841 coding downstream 341878 89917042 ~ 89932074 (+)
hectd3 hectd3 coding downstream 357044 89932208 ~ 89947643 (+)
G759813 NA non-coding upstream 57136 89497969 ~ 89503002 (+)
G759805 NA non-coding upstream 126739 89432857 ~ 89433399 (+)
G759798 NA non-coding upstream 141803 89416392 ~ 89418335 (+)
G759790 NA non-coding upstream 160291 89398232 ~ 89399847 (+)
G759785 NA non-coding upstream 175140 89384460 ~ 89384998 (+)
G759845 NA non-coding downstream 14173 89589337 ~ 89604334 (+)
G759846 NA non-coding downstream 15667 89590831 ~ 89605556 (+)
G759847 NA non-coding downstream 19290 89594454 ~ 89608337 (+)
G759849 NA non-coding downstream 21288 89596452 ~ 89596730 (+)
G759850 NA non-coding downstream 21650 89596814 ~ 89610670 (+)
slc25a24l LOC106569755 other upstream 465744 89074624 ~ 89139486 (+)
G759598 NA other upstream 698310 88861079 ~ 88861828 (+)
G759556 NA other upstream 858719 88697974 ~ 88701419 (+)
G759031 LOC106569827 other upstream 1449838 88109006 ~ 88110300 (+)
G759020 LOC106569827 other upstream 1453191 88082021 ~ 88106947 (+)
G759892 NA other downstream 121256 89696420 ~ 89696907 (+)
G760623 NA other downstream 585106 90160270 ~ 90208959 (+)
G760718 NA other downstream 798923 90362653 ~ 90400472 (+)
LOC110530875 rpl37a other downstream 1125131 90700188 ~ 90709778 (+)
ndufb3 ndufb3 other downstream 1162127 90737231 ~ 90743084 (+)
G759884 NA non-coding downstream 28781 89688128 ~ 89688933 (+)
G759887 NA non-coding downstream 32202 89691549 ~ 89692102 (+)
G759901 NA non-coding downstream 53844 89713191 ~ 89713407 (+)
G759904 NA non-coding downstream 60178 89719525 ~ 89719885 (+)
G759905 NA non-coding downstream 64393 89723740 ~ 89724053 (+)

Expression


Co-expression Network