XLOC_002592 (nfkbil1)


Basic Information

Item Value
gene id XLOC_002592
gene name nfkbil1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8034688 ~ 8041948 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004826
GACGCACTCCAATGATGTGCTACATTTGTTTACGTCCGTGTTTAAGCCATTGAAATGTCATATCACGATGAAATGTGGCATTCAAGTCGAATACGTGAACAATGTCGTCTAGAATTTATTATCCGCGTGTCTTTTTAACGAGAGCTAATGGAGAAAAGAAAGCAAAAGAAAGTTATGCGCTACGTGGAGGAGGGCAGTCTGATGAAGCTGAAATCATTCCTCCGTAAACACAAGGATCTGGAGCTGAACTTCACCAAAGGGAAGAAGCGCAGAAGCCCGCTGCACGTTACCTGTTCCCACGGGGATGATGCGATCCTCAGGCTGCTGCTGAAACACGGAGCAGACCCGCTGCAAACAGACAGAAACGGAGACACGCCGTTACATGTGGCTGTGAAAAGAgccctcaaacatggcaaaagaGcTTATGATGACCTGGTGGTGCCACTGCGGAAGAACTGTCCACAATCGATGGATATATCTAATAAAGCAGGAGTGACTCCTCATGACCTGCTCCAGTGGATGAAGAAGCCCGAGCAGGGGAATACCAAAGATGAATCCTCACACGTTGATACTGAGCAACAATGGAGAGAGAAGCTTTTAGGAGAATGCCAGGATGAGTTTTTTGAGACATTCGGACAGTTTGATGATGACCACTTATGGGATGACAAAGATGAGGAAGAATTCGGAGACTGGGCCGATCGTATCCGAAGAGAGTATTTCAGCAAGCAGCGAAGCCGAGAACAGAGAGAAGCATCTTCTTCTGGACACAAGAAATCCAAAAGGCCGAAGGAGACGGAAGAGGACGAGAGGAGCCGAAAAGAGCTAAATGCCAGACTGGAGCGCGAGCATCAGGAGTACCTGCAGAGAGCAGCTCGAAAAGAGGAAGAGACGCGGCAGGGAAGGAAGAGGCGTTACGAGGAGCGCTGCACTGCCACCTTTCACGGCTCATCCAGCAAGGGTCAGGAAGGCCTGCTGGCATACGAGGACATCCCTTGGCCTGCACCTCGGGGGTCGTTGGATGAAATGGTGGCCGTTATGTTGCATGGAGCCAATCGGGCTGATTTGCCAGCTTTCCGGAAGATTCTCCGTCGACAGCAGGCGCTCTGGCATCCGGACAAGTTTGCCCAGCGCTGTGGAGGTCGACTGCTGGATTCGGATAGGAAAAAGATTCTGGACACGGTTACTGGACTCTCACAGGAGCTCAACAGACTCGCACAGAGCCTCAGATGATGCACAGCTCTccgtttgtttgatttttatgtttgtactgtatgttcgattttttttttttgaccgttCAAATGCAAAAATTAGTAGTGGTTGCTTTGTTGAAATAGGGGCGGCAGAGGAGgatgtattttattcatttattttttcagtggTTTATTACTTGGGGggaaagtttttttaaaataaaaattctcctCTGCCACCCCTATTTTAATAAAGCAGCTACTACTAATTGTgcttttaaatgttcaaaaatcatcttacatactgtacaacaggggtgctcaatcctgttcctggagagccaccttcctgcagatttcagttgctacccatatcaaacacacctgaaccaattaattaggaactGAACACACTTGATaactacaggcaggtgtgtttggctgtttctcaatatgcgttcttcagcggtcttgcgtcctcgtgttctcgtgcaacgtcgtCATCAGCTGCctagttcagttccaatactcaagaccgcaagtacggaggacgcgtgaaacttcccggatgtgttcttgatatcaaggacgCACTGATACAGACTTGAGCggcgaactcgctctggaagtcccagaagtcattgcgactggaggtgggaagcgcagcattttatttagatttattattaaagttcagagatatcatttatttacctcaggagtttccctaaatgacactgtgaaagtaaacattaacatggacatctttataaaggaataaacacattaagggttgtttgtttgctgaaattcgtattcaaatttgttttatttatattgtgcagagtatatttataatgtttttatgcaaagtatatattttgaagaggggggaaacaataaatcgttgtatgaatgctgtaatgtttaaatagtaaattatttaaaatgcgtGCAGGTCACATGACCACCAGAAAGAACGCAGCATCcaatttctcaaaggacgcattctctgccctcgcggtctcctgagttcgttcttccgaggacacctggcaagaccggtctccacaagaacgcaaatccgttctctgcgttcttggaattgagaaacagcctttgatatgggtagcaactgaaatctgcaggaaggtagatctccaggaacaggattgagcacccctgttgtACAAGTTTAAAAATCTGAATGAGGAGGATtttctttatttgatttattttaataaaaatttcaaGTAATGTATTACTGGGGGTGGCTCTAATAACATTGTGATTGAGCTGGGTATTGTCAAAAGTTTGtgttaaatcattaaaatgatttttattgttgttgattatacatttaaaacacaGGTGTTTATAAAAACTCACCAAAGAAAGAATGTTGACCTACATTTTAGATTTCTGGATGAATCGAGAACGAcagtgtttttgttatttgttcatAAACAaaggttattatcattatttaaattatgtaatgtATAATTATTTGATTGAATGATCCAGTGACTTGATGGCTCTACACGcattggccattttattaggtacaccttactagtactgggttggacccctttttgcattcagaactgccttagtccttcatggcatagatttatcaaggtactggaaatattcctcagagattttagtccatattgacatgatagaatcATGCAGTTATCCTGATAGaggtagtcatcagaagatgggtatgctgtggtcatgaaggggtgtacatggtcagcaacgatactcgggtaggctgtgttgttgacacgatgctcaattggtactaatgggcccaacgtgtgccaagaaaatatcccccacaccaccagcagcctgaaccgttgatgcaaggcaggatggatacatgctttcattttcttgatgccaaattctgaccctaccatccgaatgttgcagcaatCATAGAGACATATCAGACCAGACaacttttccaatcttctattgtccaattttggtgagcctgtgcgaattgtattCTCAGTTTCTTGtcgttagctgacaggagtgacaaccggtgtggtcttctgctgctgtagttcatccacctcaaggttggacgtgttgtgcgttcagggatgctcttctgcataactcggttgtaacgagttgtaatttgagttactgttgtctttctatcagctcagaCCAGTCCCTTTTcttttctgacctctggcatcacaATAAGGCTTTTGCGccaacagaactgccactcactggatattttctctttttcagaccattctctgtaaaccctagagatggttgtgcataaaaatcccagtagatcagcagtttcggaaatactcagaccagcctttctggcacaacaaccatgccatgtttaacgTCACTTAAATCTGTTAAGGCACTTaaattccccattctgatgctcgatttgaactgcatcagatcatcttgaccatgtctacatgcctaaatacattaagTTGTTGGCATATGATTGACTGCTCAGAggtttgtgttaacaagcagttggacctaataaagtggcctgtgggtaaaatattagttttatcatttgtaaattatttttgcacattattAGGGatggttaaacacaaaagaatgtATTTTGAAGACTATTGGGAACTGGTGGGAAAAAGAAAATACTAAAGTTAGTT

Function

symbol description
nfkbil1 Predicted to act upstream of or within I-kappaB kinase/NF-kappaB signaling. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in rheumatoid arthritis. Orthologous to human NFKBIL1 (NFKB inhibitor like 1).

GO:

id name namespace
GO:0007249 I-kappaB kinase/NF-kappaB signaling biological_process

KEGG:

id description
ko03000 Transcription factors
ko03110 Chaperones and folding catalysts

ZFIN:

id description
ZDB-GENE-040116-7 Predicted to act upstream of or within I-kappaB kinase/NF-kappaB signaling. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in rheumatoid arthritis. Orthologous to human NFKBIL1 (NFKB inhibitor like 1).

Ensembl:

ensembl_id ENSDARG00000003157

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004826 True 3889 mRNA 0.43 4 8034688 8041948

Neighbor

gene id symbol gene type direction distance location
XLOC_002591 atp6v0a2a coding downstream 1220 7988746 ~ 8033468 (-)
XLOC_002589 ewsr1a coding downstream 46271 7975585 ~ 7988417 (-)
XLOC_002590 NA coding downstream 50944 7981119 ~ 7983744 (-)
XLOC_002588 osbp2 coding downstream 60533 7916720 ~ 7974155 (-)
XLOC_002587 slc35e4 coding downstream 121097 7901012 ~ 7913591 (-)
XLOC_002593 zgc:136254 coding upstream 3416 8045364 ~ 8046764 (-)
XLOC_002594 si:ch211-251f6.7 coding upstream 9668 8051616 ~ 8053753 (-)
XLOC_002595 si:ch211-251f6.6 coding upstream 16902 8058850 ~ 8079830 (-)
XLOC_002596 ndufa9b coding upstream 86426 8128374 ~ 8129456 (-)
XLOC_002597 CU633857.1 coding upstream 104400 8146348 ~ 8153043 (-)
XLOC_002585 BX294661.1 non-coding downstream 142004 7870627 ~ 7892684 (-)
XLOC_002586 NA non-coding downstream 148648 7883753 ~ 7886040 (-)
XLOC_002575 BX537303.2 non-coding downstream 522565 7512008 ~ 7512123 (-)
XLOC_002572 NA non-coding downstream 780790 7238244 ~ 7253898 (-)
XLOC_002602 NA non-coding upstream 576770 8618718 ~ 8621543 (-)
XLOC_002603 NA non-coding upstream 596973 8638921 ~ 8657677 (-)
XLOC_002605 BX571955.1 non-coding upstream 633942 8675890 ~ 8677828 (-)
XLOC_002606 NA non-coding upstream 799750 8841698 ~ 8858568 (-)
XLOC_002609 CU694950.1 non-coding upstream 974773 9016721 ~ 9016837 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_06523767_06526359 NA coding CI01000304 null 6523705 ~ 6526427 (+)