yipf1 (yipf1)


Basic Information

Item Value
gene id yipf1
gene name yipf1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89790910 ~ 89837790 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614193.2
ATATGCGATGATTTTTATGTGCTGTTTCGAGATCAGATCATTTGACTATTATTTAGAAAAACGAAAATGCGACCGGAAAAGGGAGCTGAGTTTACCTTACACATATTTTCTTACTTCTTTAACTGCTGAGAGGACTCTTGATTAGTCTCCTACATGGCGGCTAACAGCGATTTCCTCTTAACATTTCAAGaatttGACAGTTCTGAGAGCCATTTGGGAGGGAACGGAGATGCGACTACCATCAGTATCGAGGACACAGGGGCAGGAAGTCACAAACCTCAGAAACAGAGGAGATCTGCACCGGTGACATCCTTCGAAGAGGACAATGACCCATTGGCTAATGACGACAAGACTGAGCTGTTGTCTGGGCAGAAGAGAAGTGCTCCTTTCTGGACCTTTGAATATTATCAGAGATTCTTTGACGTAGAGACACACCAGGTGAGAGAGAGAATCCTGGGGTCGTTATTGCCATGGCCAGGGAAGAACTTTGTCCATCTCTACATCCGCAACAACCCTGATCTTTATGGTCCCTTCTGGATCTGTGCTACTCTGGTTTTTGTCATCGCCATCTGTGGAAACATCTCTGACTTCCTGGTTTACCTGGGGAATCCACAGTATAAATACGTCCCAGAGTTCCGGAAAGTGACCATTGCGGCCACGGCGATCTACAGCTATGCGTGGCTGGTTCCCCTGGCCCTGTGGGGCCTGCTGGTCTGGAGGAACTCCAAGGTTATGAACAGAGTTTCTTACTCATTCCTGGAGATCGTCTGTGTGTACGGATACTCCCTGGCCGTCTACATACCTGCTGTGgtgttGTGGATCATCCCGAACGAGGCCGTTAGGTGGTTTTCCATTGTtgtggctctctgtctctctggttccATCCTGGTCTTGACCTTCTGGCCCGCCGTCCGTGACGACCAGCCCCGGGTTGCCATAGCGATCATGACGGCCATCGTGGCACTCCACATCCTCTTGGCGTTCGGTTGTAAGGCTTACTTCTTCAGTACGTTGGAGGTTAAACACACTGCTGTTGATGCTGCGGTGGACCATGGAACCAAGTCGTCTCCAACCATGAAGATGCACAGAACTAATACAATGTCCTGAGGTAGAATCAAGTTGCTGTGGCGATGGTGTCATGGTGTCGTCTTGGTTACCGACCTGCTGCACCGACCTTGCCTGGGTGGGTCTTCCTGCTAAAAGCCCTTAAAGACACAGTAACGTGTTAcagcacgacacacacacacacacacacctggattgtaatcATTTggtaccaaatggaagaaaatggtCTGAAACAATAATAAACGCATATTTGCGTTTTCTGTTGCAtagtgttttaaaatgtttttcatgtgtatgtactaatgaacacgaccctggtcCGAAGACCTGGGTTAtttaccaaatggcaccctattccttatatagtgcactgcttttgaccaggaacCCTATaatgcactatagagggaatagggtgccatttggaacttcTGGAAATGGACACTGGGTGACAACAGAATGTTTTTTCTAATGGGATGGTGTCTGAACTGTCTGCCTTAACGATATAGAACTAAACATGAGTTGTGTTACTGGGTAGAGCCAGTCCCTTCCTTGTTTAACTAGTCATAGTTttactgttatatatatatataaatatacaacTTGATATTGATAAGACACTTCACAAAAAAATGTCATTTGAAAGACGCTTCTTTGTATTAAAATGTTTTTCATTGTTA
>XM_021614191.2
ACTATTATTTAGAAAAACGAAAATGCGACCGGAAAAGGGAGCTGAGTTTACCTTACACATATTTTCTTACTTCTTTAACTGCTGAGAGGGTAAAGTATATATTGATGACTCTTGATTAGTCTCCTACATGGCGGCTAACAGCGATTTCCTCTTAACATTTCAAGaatttGACAGTTCTGAGAGCCATTTGGGAGGGAACGGAGATGCGACTACCATCAGTATCGAGGACACAGGGGCAGGAAGTCACAAACCTCAGAAACAGAGGAGATCTGCACCGGTGACATCCTTCGAAGAGGACAATGACCCATTGGCTAATGACGACAAGACTGAGCTGTTGTCTGGGCAGAAGAGAAGTGCTCCTTTCTGGACCTTTGAATATTATCAGAGATTCTTTGACGTAGAGACACACCAGGTGAGAGAGAGAATCCTGGGGTCGTTATTGCCATGGCCAGGGAAGAACTTTGTCCATCTCTACATCCGCAACAACCCTGATCTTTATGGTCCCTTCTGGATCTGTGCTACTCTGGTTTTTGTCATCGCCATCTGTGGAAACATCTCTGACTTCCTGGTTTACCTGGGGAATCCACAGTATAAATACGTCCCAGAGTTCCGGAAAGTGACCATTGCGGCCACGGCGATCTACAGCTATGCGTGGCTGGTTCCCCTGGCCCTGTGGGGCCTGCTGGTCTGGAGGAACTCCAAGGTTATGAACAGAGTTTCTTACTCATTCCTGGAGATCGTCTGTGTGTACGGATACTCCCTGGCCGTCTACATACCTGCTGTGgtgttGTGGATCATCCCGAACGAGGCCGTTAGGTGGTTTTCCATTGTtgtggctctctgtctctctggttccATCCTGGTCTTGACCTTCTGGCCCGCCGTCCGTGACGACCAGCCCCGGGTTGCCATAGCGATCATGACGGCCATCGTGGCACTCCACATCCTCTTGGCGTTCGGTTGTAAGGCTTACTTCTTCAGTACGTTGGAGGTTAAACACACTGCTGTTGATGCTGCGGTGGACCATGGAACCAAGTCGTCTCCAACCATGAAGATGCACAGAACTAATACAATGTCCTGAGGTAGAATCAAGTTGCTGTGGCGATGGTGTCATGGTGTCGTCTTGGTTACCGACCTGCTGCACCGACCTTGCCTGGGTGGGTCTTCCTGCTAAAAGCCCTTAAAGACACAGTAACGTGTTAcagcacgacacacacacacacacacacctggattgtaatcATTTggtaccaaatggaagaaaatggtCTGAAACAATAATAAACGCATATTTGCGTTTTCTGTTGCAtagtgttttaaaatgtttttcatgtgtatgtactaatgaacacgaccctggtcCGAAGACCTGGGTTAtttaccaaatggcaccctattccttatatagtgcactgcttttgaccaggaacCCTATaatgcactatagagggaatagggtgccatttggaacttcTGGAAATGGACACTGGGTGACAACAGAATGTTTTTTCTAATGGGATGGTGTCTGAACTGTCTGCCTTAACGATATAGAACTAAACATGAGTTGTGTTACTGGGTAGAGCCAGTCCCTTCCTTGTTTAACTAGTCATAGTTttactgttatatatatatataaatatacaacTTGATATTGATAAGACACTTCACAAAAAAATGTCATTTGAAAGACGCTTCTTTGTATTAAAATGTTTTTCATTGTTA

Function

symbol description
yipf1 Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in late endosome membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human YIPF1 (Yip1 domain family member 1).

NR:

description
protein YIPF1-like

GO: NA

KEGG:

id description
K22940 YIPF1_2; protein YIPF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614193.2 False 1748 mRNA 0.45 10 89790910 89837790
XM_021614191.2 True 1722 mRNA 0.46 10 89790954 89837790

Neighbor

gene id symbol gene type direction distance location
LOC118965583 LOC106569839 coding upstream 215746 89560138 ~ 89659347 (+)
pigk pigk coding upstream 469357 89296952 ~ 89321553 (+)
LOC110530860 LOC106569749 coding upstream 499569 89225089 ~ 89291341 (+)
LOC118965581 NA coding upstream 526960 89261614 ~ 89263950 (+)
usp33 LOC106569751 coding upstream 567204 89148990 ~ 89223706 (+)
zgc:113691 LOC106569840 coding downstream 15676 89853466 ~ 89854375 (+)
ndc1 ndc1 coding downstream 24031 89861821 ~ 89911594 (+)
best4 LOC106569841 coding downstream 79252 89917042 ~ 89932074 (+)
hectd3 hectd3 coding downstream 94418 89932208 ~ 89947643 (+)
rps8a rs8 coding downstream 113321 89951111 ~ 89957717 (+)
G759937 NA non-coding upstream 15998 89773472 ~ 89774912 (+)
G759906 NA non-coding upstream 64623 89724812 ~ 89726287 (+)
G759905 NA non-coding upstream 66857 89723740 ~ 89724053 (+)
G759904 NA non-coding upstream 71025 89719525 ~ 89719885 (+)
G759901 NA non-coding upstream 77503 89713191 ~ 89713407 (+)
G759967 NA non-coding downstream 17069 89854859 ~ 89855189 (+)
G759970 NA non-coding downstream 19669 89857459 ~ 89857740 (+)
G759979 NA non-coding downstream 74079 89911869 ~ 89912304 (+)
G760491 NA non-coding downstream 77180 89914970 ~ 89915169 (+)
G760498 NA non-coding downstream 85270 89923060 ~ 89924400 (+)
G759892 NA other upstream 94003 89696420 ~ 89696907 (+)
slc25a24l LOC106569755 other upstream 696516 89074624 ~ 89139486 (+)
G759598 NA other upstream 929082 88861079 ~ 88861828 (+)
G759556 NA other upstream 1089491 88697974 ~ 88701419 (+)
G760623 NA other downstream 322480 90160270 ~ 90208959 (+)
G760718 NA other downstream 536297 90362653 ~ 90400472 (+)
LOC110530875 rpl37a other downstream 862505 90700188 ~ 90709778 (+)
ndufb3 ndufb3 other downstream 899501 90737231 ~ 90743084 (+)
G760857 NA other downstream 932327 90770117 ~ 90771037 (+)

Expression


Co-expression Network