zgc:113691 (LOC106569840)


Basic Information

Item Value
gene id zgc:113691
gene name LOC106569840
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89853466 ~ 89854375 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614336.2
ttTATAGGTTATTATCCCACACTAGGGGATTCTAGTTTTATGTGTGATATTTGAGTCTGTTAAAAGCTATAACCGCATGGCTGAGAAAAAAGAGAACGTCTCCAAGTTTGAGATGTTGAAACTTCTGGAGAAgtgcaggaaagagagagacgatGCGGTGCACAGGGAGAGTATTATGAGGGAGAAGCTGAGACAGTACGAGTCCAGGATGAGGTCAACGGAGTTGCTGAAACAGAAATTCAAGACCATGACTTCGGAAAACAAGGAGCTGCGCAAGCATGTCAAGACTCTCCGCCAAGAGATAGGCCTGGAGGCGAGCCCCAAGTTCAACGGCAAAACCACCAAGGACATCATCTCTGACATGCACGAGAAGGAGCGCCAGTGCAGTTTCCTGGTGGAGAAAACAGGTAGACTCAGTTTGACCATTGATGATCTGACAGCAGAGCTGGCAAATGCTGTCACGTCCAAAACTCTTCTGGAATATCAGGTGCAGTCGTTACAGCAGAACCTGAAGGACATGACGAATAATCAACGCCGTTTGTTGAAACTCTGGGAGGATAAGAGATCTCAAAGAGAGCAGCTCACTCTCCCTGCAATAGGCCTGCCACAGAGGCCTGGAGAGAAATCTATCTCTCACAAGGGAGTACAAACAGAGATGTCCATCGATTCAGCCCAGAAACTCCCACACAACGCGTTTGAGACCAAACCTTCTCCTTCACCACGATCACGACACCACAAGACAAGGTCTTCTATAGATAAACAACAGGGATTAACAACATTGGGAAATGGTCATCAGCTGGGGAACGGCAACCATCATACACTGGGAAATGGCCTCCAGTTGGGAAATGGGAATCATCAACGTGAAAAGGAGGATTTATTTCACTATGAAACCAATGAACACATACTGTAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614336.2 True 910 mRNA 0.46 1 89853466 89854375

Neighbor

gene id symbol gene type direction distance location
yipf1 yipf1 coding upstream 15676 89790910 ~ 89837790 (+)
LOC118965583 LOC106569839 coding upstream 278302 89560138 ~ 89659347 (+)
pigk pigk coding upstream 531913 89296952 ~ 89321553 (+)
LOC110530860 LOC106569749 coding upstream 562125 89225089 ~ 89291341 (+)
LOC118965581 NA coding upstream 589516 89261614 ~ 89263950 (+)
ndc1 ndc1 coding downstream 7446 89861821 ~ 89911594 (+)
best4 LOC106569841 coding downstream 62667 89917042 ~ 89932074 (+)
hectd3 hectd3 coding downstream 77833 89932208 ~ 89947643 (+)
rps8a rs8 coding downstream 96736 89951111 ~ 89957717 (+)
LOC118965662 NA coding downstream 97857 89952232 ~ 89952338 (+)
G759950 NA non-coding upstream 39125 89796843 ~ 89814341 (+)
G759954 NA non-coding upstream 51733 89800542 ~ 89801733 (+)
G759937 NA non-coding upstream 78554 89773472 ~ 89774912 (+)
G759906 NA non-coding upstream 127179 89724812 ~ 89726287 (+)
G759905 NA non-coding upstream 129413 89723740 ~ 89724053 (+)
G759967 NA non-coding downstream 484 89854859 ~ 89855189 (+)
G759970 NA non-coding downstream 3084 89857459 ~ 89857740 (+)
G759979 NA non-coding downstream 57494 89911869 ~ 89912304 (+)
G760491 NA non-coding downstream 60595 89914970 ~ 89915169 (+)
G760498 NA non-coding downstream 68685 89923060 ~ 89924400 (+)
G759892 NA other upstream 156559 89696420 ~ 89696907 (+)
slc25a24l LOC106569755 other upstream 759072 89074624 ~ 89139486 (+)
G759598 NA other upstream 991638 88861079 ~ 88861828 (+)
G759556 NA other upstream 1152047 88697974 ~ 88701419 (+)
G760623 NA other downstream 305895 90160270 ~ 90208959 (+)
G760718 NA other downstream 519712 90362653 ~ 90400472 (+)
LOC110530875 rpl37a other downstream 845920 90700188 ~ 90709778 (+)
ndufb3 ndufb3 other downstream 882916 90737231 ~ 90743084 (+)
G760857 NA other downstream 915742 90770117 ~ 90771037 (+)

Expression


Co-expression Network