best4 (LOC106569841)


Basic Information

Item Value
gene id best4
gene name LOC106569841
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89917042 ~ 89932074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986753.1
TTACACTTGGAGTTTGGAGAAAGGGGGGCATGATTTTACACTTGGAGCTTGGAGAAAGAGGGGCATGATTTTACACTTGGAGCTTGGAGAAAGGGGGGCATGATTTGCACTTGGAGATTGGAGAAAGGGGGGCATGATTTGCACTTGGAGCTTGGAGAAAGAGGGGCATTATTTTACACTTGGAGCTTGGAGAAAGGGGGGCATGATTTTACACTTGGAGCTTGGAGAAAGAGGGGCATGATTTTACACTTGGAGCTTGGAGAAAGGGGGGCATGATTTTACCCCTGGAGCTTGGAGAAAGAGGGGCATGATTTTACACTTGGAGCTTGGAGAAAGGGGGGCATGATTTGCACTTGGAGATTGGAGAAAGAGGGGCATGATTTTACACTTGGAGCTTGGAGAAAGAGGGGCATGATTTTACACTTGGAGCTTGGAGAAAGGGGGGCATGATTTTACACTTGGAGCTTGGAGAAAGAGGGGCATGATTTTACACTTGGAGCTTGGAGAAAGGGGGGCATGATTTTACACTTGGAGCTTGGAGAAAGGGGGGCATGATTTTACACTTGGAGCCTGGAGAAAGAGGGGCATGATTTTACACTTGGAGCTTGGAGAAAGGGGGGCATGATTTTACACTTGGAGTTTGGAGAAAGGGGGGCATGATTTGCTGACATAATTATAATCTAAATCCCACCTTAATTTACTCATTGTGACACACTGAGGTTCCAAACTCTGTTTTAGACCAGACTGACTTAATGACCAAAATTATCCCATTTACACTTTGTTGTCAATTTTGACACgataataaatgtttctgactcatattgatGCCACAGGCCGTTTTTCAAAGGGATTcgttgtttagttttttttaaggGGCCAGTCATTCTTTAATGCTTGTTTGTACTTCCTCAATTGTTATCTCATGTGGGCCCAAAGGTGAACTTGACTTGACATGTTTTGTCGACAGGCCACTTCTTTTACACATGGTTTCCCAGCCTATAAATCTCAGGAGGATCAGCATCCTCTATctcacatgatgatgatgatgatgaattcTGACAGGACACAGTAGAGGTTTCAAACGAGAGGAGAGGGAAGTGATGATCTTTCTCGGGACAGAGTGACTGGATACAGGAGTACAGCAGTCTTTACAGGTTCTCCACAACGACATAACGATGACGGTCTCCTACACCCTAGAAGTGGCCAATGCTAAGTTTGGAGGGTTTTCCAAGCTGCTCTTCAGGTGGAGGGGAAGCATCTACAAGCTGTTATATAAAGAGTTCCTGGTGTTCTGTCTGCTGTACAGCTTCTTCAGTGTTTTCTACAGGTTCTTCCTCACTGAGAAACAACAGTTGTTGTTTGAAAATGTAGCCCTTTACTGTGACCAGTTTACCAACTTTATACCAATGTCCTTTGTGCTGGGTTTCTATGTAACCCTGGCGTTCAACCGTTGGTGGGGTCAGTACACCAGCTTCCCCCTGCCTGATAACCTGATGATGGTGGTGTCAGGGAACGTCCACGGGCTCGACGAGAGGGGCCGGCTGCTCCGACGCACCCTCATGAGATATGCtaacctctcctctgtcctcatcctGCGATCCATCAGCACTAGAGTACGCAGGAGGTTCCCAACCCTGGAGCAGGTGGTGGATGCAGGATTTATGACACCACTGGAGCATCGCCAGCTGGATGGTCTGTACTCTGACTTCAACAAGTACTGGATGCCTCTGACGTGGTTCACTAACCTGGCATCACGGGCCAGACAGGAGGGCCGGATCAGAGACGACGTCGCTCTACGACTTCTCATGGATGAGCTGAATAACTACAGAGGAAAGTGCAGCCTGCTGTTTCACTATGACTGGATCAGTATTCCTCTGGTCTACACTCAGGTAGTGACCCTGGCTGTGTACTCGTTCTTCGGCTTCTGTCTGATTAGTCGGCAGTTCCTGAACCCTGAGAAGGGGTATAAAGGTCACCAGCTGGATTTGTACGTCCCCGTCTTCACCCTGCTTCAGTTCTTCTTCTATGCAGGCTGGCTCAAGGTGGGGGAACTGATCATCAATCCTTTTGGAGAGGACGATGACGATTTTGAAACCAACCAACTAATTGACCGAAATATTCAGGTGTCCATGCTGGCTGTGGATGACATGCACCAGAACCTGCCCCCAACAGAGAAGGACAAGTTCTGGGTGGAGAGATACTTCTCTGTCCCCTACTCTACTGGTACTGAGACCCTCAGACCTACCTTCATGGGCTCAACATATGACATAAGCTTTGAATCTGGTCAGGCCGTCTCCATGCCCTTCGTCTATAAGGATGAGTGTGGTGATGTGGACAGGAAGATGAAGGATGTGTCtttagtgagagacagacagctgaAGGTGTCTCATCTTCAGACAGAACGAGGGGAGGGGCAGTTCAAGGTGGCTGTGGAACTCATCCAAGCCAATGACAATGAGCAGAGCTCTTGTTGAAAGATCTGTGCAACTCGTTTATgggttttgtttatttttggggGGATAATTCATGCATTTTCCATGCACCTGTGTGTCAATGATTGTGTGAAATGTCTTCTACAATCATGTTTAGATTGTTTGTTTGTAATCCTGGTTATTAAAAAATGATTTTGAAAAACATTAATTCTTATTTTTATGAAGAATATAAAAACCATTAAATTAAACAGCTGTGACAGTGATGCATGACTTTTAACTTTGAAGCCTGATTCCATGATATAACATTGTAGATTGATTTCAAGAACTAAATGAGATTATCTACATAAATGAATATACTGTAAATTGTGAACCAATCTGCCAAGACTGACATACGTATGTAAGGAATAAAGGTGTGATTCTTtttcatatttcatttttttgtattCTCTTGTATTGTTTATTTTCTGGTGTATTTTTTACGCAATGTGTTGTGTAATTTGTAAGATGCGGAGCTTTTTTGGTCTCAATAGGAcaccctgttaaaataaaggGCAAATAAAAAGCA
>XM_036986755.1
CAGCTACGTTTCCCTGTCTATTTGACAGGTTCTCCACAACGACATAACGATGACGGTCTCCTACACCCTAGAAGTGGCCAATGCTAAGTTTGGAGGGTTTTCCAAGCTGCTCTTCAGGTGGAGGGGAAGCATCTACAAGCTGTTATATAAAGAGTTCCTGGTGTTCTGTCTGCTGTACAGCTTCTTCAGTGTTTTCTACAGGTTCTTCCTCACTGAGAAACAACAGTTGTTGTTTGAAAATGTAGCCCTTTACTGTGACCAGTTTACCAACTTTATACCAATGTCCTTTGTGCTGGGTTTCTATGTAACCCTGGCGTTCAACCGTTGGTGGGGTCAGTACACCAGCTTCCCCCTGCCTGATAACCTGATGATGGTGGTGTCAGGGAACGTCCACGGGCTCGACGAGAGGGGCCGGCTGCTCCGACGCACCCTCATGAGATATGCtaacctctcctctgtcctcatcctGCGATCCATCAGCACTAGAGTACGCAGGAGGTTCCCAACCCTGGAGCAGGTGGTGGATGCAGGATTTATGACACCACTGGAGCATCGCCAGCTGGATGGTCTGTACTCTGACTTCAACAAGTACTGGATGCCTCTGACGTGGTTCACTAACCTGGCATCACGGGCCAGACAGGAGGGCCGGATCAGAGACGACGTCGCTCTACGACTTCTCATGGATGAGCTGAATAACTACAGAGGAAAGTGCAGCCTGCTGTTTCACTATGACTGGATCAGTATTCCTCTGGTCTACACTCAGGTAGTGACCCTGGCTGTGTACTCGTTCTTCGGCTTCTGTCTGATTAGTCGGCAGTTCCTGAACCCTGAGAAGGGGTATAAAGGTCACCAGCTGGATTTGTACGTCCCCGTCTTCACCCTGCTTCAGTTCTTCTTCTATGCAGGCTGGCTCAAGGTGGGGGAACTGATCATCAATCCTTTTGGAGAGGACGATGACGATTTTGAAACCAACCAACTAATTGACCGAAATATTCAGGTGTCCATGCTGGCTGTGGATGACATGCACCAGAACCTGCCCCCAACAGAGAAGGACAAGTTCTGGGTGGAGAGATACTTCTCTGTCCCCTACTCTACTGGTACTGAGACCCTCAGACCTACCTTCATGGGCTCAACATATGACATAAGCTTTGAATCTGGTCAGGCCGTCTCCATGCCCTTCGTCTATAAGGATGAGTGTGGTGATGTGGACAGGAAGATGAAGGATGTGTCtttagtgagagacagacagctgaAGGTGTCTCATCTTCAGACAGAACGAGGGGAGGGGCAGTTCAAGGTGGCTGTGGAACTCATCCAAGCCAATGACAATGAGCAGAGCTCTTGTTGAAAGATCTGTGCAACTCGTTTATgggttttgtttatttttggggGGATAATTCATGCATTTTCCATGCACCTGTGTGTCAATGATTGTGTGAAATGTCTTCTACAATCATGTTTAGATTGTTTGTTTGTAATCCTGGTTATTAAAAAATGATTTTGAAAAACATTAATTCTTATTTTTATGAAGAATATAAAAACCATTAAATTAAACAGCTGTGACAGTGATGCATGACTTTTAACTTTGAAGCCTGATTCCATGATATAACATTGTAGATTGATTTCAAGAACTAAATGAGATTATCTACATAAATGAATATACTGTAAATTGTGAACCAATCTGCCAAGACTGACATACGTATGTAAGGAATAAAGGTGTGATTCTTtttcatatttcatttttttgtattCTCTTGTATTGTTTATTTTCTGGTGTATTTTTTACGCAATGTGTTGTGTAATTTGTAAGATGCGGAGCTTTTTTGGTCTCAATAGGAcaccctgttaaaataaaggGCAAATAAAAAGCA
>XM_036986756.1
CGAGGAAGTGTTCGAGGAAGGGGACAACCAACTTTATGATGAAATGTGATCAACAGTCATGTTTCTTCTTTgatctggtttcatccaaatatcatcaCATTTCATGAAAAACTGTTCAGGACCATTAAGGGTTCTTCCTCACTGAGAAACAACAGTTGTTGTTTGAAAATGTAGCCCTTTACTGTGACCAGTTTACCAACTTTATACCAATGTCCTTTGTGCTGGGTTTCTATGTAACCCTGGCGTTCAACCGTTGGTGGGGTCAGTACACCAGCTTCCCCCTGCCTGATAACCTGATGATGGTGGTGTCAGGGAACGTCCACGGGCTCGACGAGAGGGGCCGGCTGCTCCGACGCACCCTCATGAGATATGCtaacctctcctctgtcctcatcctGCGATCCATCAGCACTAGAGTACGCAGGAGGTTCCCAACCCTGGAGCAGGTGGTGGATGCAGGATTTATGACACCACTGGAGCATCGCCAGCTGGATGGTCTGTACTCTGACTTCAACAAGTACTGGATGCCTCTGACGTGGTTCACTAACCTGGCATCACGGGCCAGACAGGAGGGCCGGATCAGAGACGACGTCGCTCTACGACTTCTCATGGATGAGCTGAATAACTACAGAGGAAAGTGCAGCCTGCTGTTTCACTATGACTGGATCAGTATTCCTCTGGTCTACACTCAGGTAGTGACCCTGGCTGTGTACTCGTTCTTCGGCTTCTGTCTGATTAGTCGGCAGTTCCTGAACCCTGAGAAGGGGTATAAAGGTCACCAGCTGGATTTGTACGTCCCCGTCTTCACCCTGCTTCAGTTCTTCTTCTATGCAGGCTGGCTCAAGGTGGGGGAACTGATCATCAATCCTTTTGGAGAGGACGATGACGATTTTGAAACCAACCAACTAATTGACCGAAATATTCAGGTGTCCATGCTGGCTGTGGATGACATGCACCAGAACCTGCCCCCAACAGAGAAGGACAAGTTCTGGGTGGAGAGATACTTCTCTGTCCCCTACTCTACTGGTACTGAGACCCTCAGACCTACCTTCATGGGCTCAACATATGACATAAGCTTTGAATCTGGTCAGGCCGTCTCCATGCCCTTCGTCTATAAGGATGAGTGTGGTGATGTGGACAGGAAGATGAAGGATGTGTCtttagtgagagacagacagctgaAGGTGTCTCATCTTCAGACAGAACGAGGGGAGGGGCAGTTCAAGGTGGCTGTGGAACTCATCCAAGCCAATGACAATGAGCAGAGCTCTTGTTGAAAGATCTGTGCAACTCGTTTATgggttttgtttatttttggggGGATAATTCATGCATTTTCCATGCACCTGTGTGTCAATGATTGTGTGAAATGTCTTCTACAATCATGTTTAGATTGTTTGTTTGTAATCCTGGTTATTAAAAAATGATTTTGAAAAACATTAATTCTTATTTTTATGAAGAATATAAAAACCATTAAATTAAACAGCTGTGACAGTGATGCATGACTTTTAACTTTGAAGCCTGATTCCATGATATAACATTGTAGATTGATTTCAAGAACTAAATGAGATTATCTACATAAATGAATATACTGTAAATTGTGAACCAATCTGCCAAGACTGACATACGTATGTAAGGAATAAAGGTGTGATTCTTtttcatatttcatttttttgtattCTCTTGTATTGTTTATTTTCTGGTGTATTTTTTACGCAATGTGTTGTGTAATTTGTAAGATGCGGAGCTTTTTTGGTCTCAATAGGAcaccctgttaaaataaaggGCAAATAAAAAGCA

Function

NR:

description
bestrophin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986753.1 False 2997 mRNA 0.45 10 89917042 89932074
XM_036986755.1 False 1871 mRNA 0.45 9 89918257 89932074
XM_036986756.1 True 1800 mRNA 0.44 9 89921435 89932074

Neighbor

gene id symbol gene type direction distance location
ndc1 ndc1 coding upstream 5448 89861821 ~ 89911594 (+)
zgc:113691 LOC106569840 coding upstream 62667 89853466 ~ 89854375 (+)
yipf1 yipf1 coding upstream 79252 89790910 ~ 89837790 (+)
LOC118965583 LOC106569839 coding upstream 341878 89560138 ~ 89659347 (+)
pigk pigk coding upstream 595489 89296952 ~ 89321553 (+)
hectd3 hectd3 coding downstream 134 89932208 ~ 89947643 (+)
rps8a rs8 coding downstream 19037 89951111 ~ 89957717 (+)
LOC118965662 NA coding downstream 20158 89952232 ~ 89952338 (+)
LOC118965661 NA coding downstream 20542 89952616 ~ 89952684 (+)
acadm acadm coding downstream 35435 89967509 ~ 89974264 (+)
G760491 NA non-coding upstream 1873 89914970 ~ 89915169 (+)
G759979 NA non-coding upstream 4738 89911869 ~ 89912304 (+)
G759970 NA non-coding upstream 59302 89857459 ~ 89857740 (+)
G759967 NA non-coding upstream 61853 89854859 ~ 89855189 (+)
G759950 NA non-coding upstream 102701 89796843 ~ 89814341 (+)
G760503 NA non-coding downstream 17061 89949135 ~ 89949637 (+)
G760511 NA non-coding downstream 47516 89979590 ~ 89980502 (+)
G760513 NA non-coding downstream 62400 89994474 ~ 89994710 (+)
G760515 NA non-coding downstream 65873 89997947 ~ 89998361 (+)
G760516 NA non-coding downstream 66406 89998480 ~ 89998878 (+)
G759892 NA other upstream 220135 89696420 ~ 89696907 (+)
slc25a24l LOC106569755 other upstream 822648 89074624 ~ 89139486 (+)
G759598 NA other upstream 1055214 88861079 ~ 88861828 (+)
G759556 NA other upstream 1215623 88697974 ~ 88701419 (+)
G760623 NA other downstream 228196 90160270 ~ 90208959 (+)
G760718 NA other downstream 442013 90362653 ~ 90400472 (+)
LOC110530875 rpl37a other downstream 768221 90700188 ~ 90709778 (+)
ndufb3 ndufb3 other downstream 805217 90737231 ~ 90743084 (+)
G760857 NA other downstream 838043 90770117 ~ 90771037 (+)

Expression


Co-expression Network