rps8a (rs8)


Basic Information

Item Value
gene id rps8a
gene name rs8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89951111 ~ 89957717 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021614196.2
gcgGCAGTCAATGTTTCAGTTTGCGCTCATGGATTTCTAGAGTTATCGTACAGTCTCGCGATATCTGACACCTTCAAACTTCCCCATGAACCTTTGCGTGTTCTCTTTCCAGCCGGCGCCTGAGAATGGGTATCTCTAGGGACAACTGGCATAAACGCCGCAAGACCGGCGGCAAACGCAAACCCTACCACAAGAAGAGGAAGTATGAACTGGGTCGCCCCCCTGCAAACACAAAGATTGGACCTCGCCGTATTCACACGGTGAGGACCCGCGGTGGCAACAAGAAGTACCGCGCTCTGAGGGTCGACGTGGGTAACTTCTCATGGGGCTCTGAGTGCTGCACTCGTAAGACCAGGCTCATTGATGTGGTGTACAACGCCTCCAACAACGAGTTGGTGAGAACCAAGACCTTGGTGAAGAACTGCATCGTTCTCGTCGACAGCCTGCCTTACAGGCAGTGGTATGAGGCCCACTTCGCCACTCCTCTGGGACGCAAGAAGGGAGCCAAGCTGACtcccgaggaggaagaggtgatcAACAAGAAGAGGTCGAAGAAGATTCAGAAGAAGTTTGACGAGCGCAAGAAGAACTGCAAGATCAGCCCTCTCCTGGAAGAACAGTTCATGCAGGGGAAACTCCTCGcatgCATTGCCTCCAAGCCGGGCCAGTGCGGCAGGGTGGATGGCTACATTTTGGAGGGCAAGGAGCTGGAGTTCTACCTGAGGAAGATCAAGGCCAAGAAGGGCAAATAGATCCGCTGTTTAATACCATGTCAATAAAAACACAAAAGTCCCA

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02995 RP-S8e, RPS8; small subunit ribosomal protein S8e

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021614196.2 True 795 mRNA 0.53 6 89951111 89957717

Neighbor

gene id symbol gene type direction distance location
hectd3 hectd3 coding upstream 3468 89932208 ~ 89947643 (+)
best4 LOC106569841 coding upstream 19037 89917042 ~ 89932074 (+)
ndc1 ndc1 coding upstream 39517 89861821 ~ 89911594 (+)
zgc:113691 LOC106569840 coding upstream 96736 89853466 ~ 89854375 (+)
yipf1 yipf1 coding upstream 113321 89790910 ~ 89837790 (+)
acadm acadm coding downstream 9792 89967509 ~ 89974264 (+)
rabggtb rabggtb coding downstream 17815 89975532 ~ 89991005 (+)
st6galnac3 LOC106591001 coding downstream 73307 90031024 ~ 90108312 (+)
LOC110515626 LOC108444490 coding downstream 270944 90228661 ~ 90295350 (+)
LOC110530899 LOC106569745 coding downstream 416354 90374071 ~ 90397563 (+)
G760503 NA non-coding upstream 1474 89949135 ~ 89949637 (+)
G760498 NA non-coding upstream 26711 89923060 ~ 89924400 (+)
G760491 NA non-coding upstream 35942 89914970 ~ 89915169 (+)
G759979 NA non-coding upstream 38807 89911869 ~ 89912304 (+)
G759970 NA non-coding upstream 93371 89857459 ~ 89857740 (+)
G760511 NA non-coding downstream 21873 89979590 ~ 89980502 (+)
G760513 NA non-coding downstream 36757 89994474 ~ 89994710 (+)
G760515 NA non-coding downstream 40230 89997947 ~ 89998361 (+)
G760516 NA non-coding downstream 40763 89998480 ~ 89998878 (+)
G760517 NA non-coding downstream 41217 89998934 ~ 89999607 (+)
G759892 NA other upstream 254204 89696420 ~ 89696907 (+)
LOC118965583 LOC106569839 other upstream 291764 89560138 ~ 89659347 (+)
slc25a24l LOC106569755 other upstream 856717 89074624 ~ 89139486 (+)
G759598 NA other upstream 1089283 88861079 ~ 88861828 (+)
G759556 NA other upstream 1249692 88697974 ~ 88701419 (+)
G760623 NA other downstream 202553 90160270 ~ 90208959 (+)
G760718 NA other downstream 416370 90362653 ~ 90400472 (+)
LOC110530875 rpl37a other downstream 742578 90700188 ~ 90709778 (+)
ndufb3 ndufb3 other downstream 779574 90737231 ~ 90743084 (+)
G760857 NA other downstream 812400 90770117 ~ 90771037 (+)

Expression


Co-expression Network