acadm (acadm)


Basic Information

Item Value
gene id acadm
gene name acadm
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 89967509 ~ 89974264 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986757.1
TACATAACGTCATGTGACAGAACCCGCAGCGCTGATTGGatgaaacatgtatttttctgGTAGGACGAACGTGACTTGTGTACTCAAGGATTTTACGACACGGACGTCTGTAGTGCAACAATAACTATGCTTTTCAACAAGGCTCTGAGAGGGGGCGTGCAGTCTGTCCTGCGGCTCCAGAGTACCAATGCTGCAGCCGTGGCCGCTACCAGCTCTCAGAATGCTCCGTCAACAGGGTTCTGCTTTGAGATGACAGACCAACAGAAAGAGTTTCAGGAGCTAGCCAGGAAGTTTTCCCGGGAGGAGATTGTCCCTGTTGCAGCAGCCTACGACAGGAGTGGAGAATATCCTTTCCCCATCATCAAGAGAGCATGGGAGCTTGGCCTGATGAACTCTCACATTCCAGAGGACTGTGGTGGAATGGGTCTGGGCATATTTGACTCCTGCCTCATCACAGAAGAGCTGGCCTATGGTTGCACAGGAGTTCAGACTGCTATCGAAGCCAACTCTCTCGGTCAAATGCCAGTGATCATAGCCGGTAATGATTTCCAGAAGAAGAAGTACCTGGGCAGAATGACAGAGGAACCTCTCATGTGTGCGTACGGTGTGACGGAGCCTGGCGCGGGCTCTGACGTGGCGGGCCTGAAGACGCGGGCGGAGAAGAAAGGAGACGAGTACGTTGTTAACGGTCAGAAGATGTGGATCACCAACGGAGGCAAAGCCAACTGGTATTTCCTGCTGGCCCGTACTGATGCTGACCCTAAGTGTCCAACCAGCAAGGCTTTCACAGGCTTCATCGTTGACGcagattcacctggaatactAGTCGGCAGGAAGgagttgaacatgggtcagcgGTGTTCAGACACCAGAGGAATCACCTTTGAGGACGTCCGGATACCCAAGGAGAACGTTCTGATTGGAGAAGGAGCTGGCTTCAAGATTGCCATGGGAGCCTTCGACAAGACCAGACCACCAGTGGCAGCAGGCGCTACAGGTCTGGCTCAGAGAGCTCTGGATGAAGCCACTGGCTACGCTCTGGAGAGGAAGACCTTCGGGAAACTCATCGCTGAGcaCCAGGCGGTGTCGTTCCTGTTAGCTGAGATGGCCATGAAGGTGGAGCTGGCCAGGATGGGCTGGCAGAGGTCAGCGTGGGAGGTTGACAACGGGAGGAGGAACACCTACTACGCCTCCATCGCTAAGGCATTCGCCGGAGACATCGCCAACCAGGTGGCCAGCGACGCCGTGCAGGTGTTTGGAGGAAACGGCTTCAACTCTGAATACCCCGTAGAGAAACTGATGAGGGATGCCAAGATCTACCAGATCTATGAAGGTACAGCCCAGATCCAGAGGCTAATCATCTCCCGTGAACACTTCGGCAGGTTCAAGAAATGAGCTCCCAACACCTGTCAAGTCACTAGTCCCGTCCTCTCTGAATGAACACCTGTCGTCTTCCTTCTCGGTTTTTTTAATAGTCATGATCAAAACGTGTTGGTGGGCAGCATGGCTGCGGCACCccctgaaaaaatatatatatgaatttAAAATTGGATTATTCGGGTGGTGCTATTGTCCCAGACATGCTAAATCACATGTATGTCAACATATTTTGGGTGAATCAGATCTGGCACACTATGCTTTTTATATAGTtcccttcttttgaccagagcctttggtctaaagtagtgcactacatagggaatagggtgcaatgtgGCCTTCTGTCAtcacaacacaccacacgcctTGTTGCCCTTTGGTTTCAACGTTCAACTGTAGCTGGAGTGTTATTAAATGGCTTTGTGTGAAGAAGATTGTAACTTGTGAAAATATAACCGATCAAATGAGTTGGAAACATAACCCATGTAAAACCTCAACTTTATCAGCACTTTGTTGAACTGTAATAAACTATGTATACTGAT

Function

symbol description
acadm Predicted to enable medium-chain-acyl-CoA dehydrogenase activity. Predicted to be involved in fatty acid beta-oxidation and medium-chain fatty acid catabolic process. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in female organism and liver. Human ortholog(s) of this gene implicated in medium chain acyl-CoA dehydrogenase deficiency. Orthologous to human ACADM (acyl-CoA dehydrogenase medium chain).

NR:

description
medium-chain specific acyl-CoA dehydrogenase, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K00249 ACADM, acd; acyl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986757.1 True 1922 mRNA 0.50 11 89967509 89974264

Neighbor

gene id symbol gene type direction distance location
rps8a rs8 coding upstream 9792 89951111 ~ 89957717 (+)
LOC118965661 NA coding upstream 14825 89952616 ~ 89952684 (+)
LOC118965662 NA coding upstream 15171 89952232 ~ 89952338 (+)
hectd3 hectd3 coding upstream 19866 89932208 ~ 89947643 (+)
best4 LOC106569841 coding upstream 35435 89917042 ~ 89932074 (+)
rabggtb rabggtb coding downstream 1268 89975532 ~ 89991005 (+)
st6galnac3 LOC106591001 coding downstream 56760 90031024 ~ 90108312 (+)
LOC110515626 LOC108444490 coding downstream 254397 90228661 ~ 90295350 (+)
LOC110530899 LOC106569745 coding downstream 399807 90374071 ~ 90397563 (+)
LOC118965588 NA coding downstream 424335 90398599 ~ 90400473 (+)
G760503 NA non-coding upstream 17872 89949135 ~ 89949637 (+)
G760498 NA non-coding upstream 43109 89923060 ~ 89924400 (+)
G760491 NA non-coding upstream 52340 89914970 ~ 89915169 (+)
G759979 NA non-coding upstream 55205 89911869 ~ 89912304 (+)
G759970 NA non-coding upstream 109769 89857459 ~ 89857740 (+)
G760511 NA non-coding downstream 5326 89979590 ~ 89980502 (+)
G760513 NA non-coding downstream 20210 89994474 ~ 89994710 (+)
G760515 NA non-coding downstream 23683 89997947 ~ 89998361 (+)
G760516 NA non-coding downstream 24216 89998480 ~ 89998878 (+)
G760517 NA non-coding downstream 24670 89998934 ~ 89999607 (+)
G759892 NA other upstream 270602 89696420 ~ 89696907 (+)
LOC118965583 LOC106569839 other upstream 308162 89560138 ~ 89659347 (+)
slc25a24l LOC106569755 other upstream 873115 89074624 ~ 89139486 (+)
G759598 NA other upstream 1105681 88861079 ~ 88861828 (+)
G759556 NA other upstream 1266090 88697974 ~ 88701419 (+)
G760623 NA other downstream 186006 90160270 ~ 90208959 (+)
G760718 NA other downstream 399823 90362653 ~ 90400472 (+)
LOC110530875 rpl37a other downstream 726031 90700188 ~ 90709778 (+)
ndufb3 ndufb3 other downstream 763027 90737231 ~ 90743084 (+)
G760857 NA other downstream 795853 90770117 ~ 90771037 (+)

Expression


Co-expression Network