LOC110530899 (LOC106569745)


Basic Information

Item Value
gene id LOC110530899
gene name LOC106569745
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 90374071 ~ 90397563 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986769.1
CGTCAGTGTTTGTGCTGCTGGCAGAATACTCGTCTGGTTCGTCTGTATCCACAACACGTTGGGAGTATGACACAGACAGTGCAGACGAATGGGGTGCAGCCCCTCAGTAAGACATGGGAACTCAGTCTGTATGAGCTACAGAGGACTCCACAGgAGGCCATCACAGATGGGCTGGAGATAGCGGTGTCTCCCAGGAGCCTCCACAGTGAGCTGATGTGTCCCATCTGTCTGGACATGCTGAAGAACACCATGACAACCAAGGAATGTCTGCACCGCTTCTGTGCCGACTGCATCATCACCGCCCTCCGATCAGGCAACAAGGAATGCCCTACGTGCAGGAAGAAGCTGGTGTCTAAGCGGTCCCTGCGGCCGGACCCTAACTTTGATGCCCTCATCAGTAAGATCTACCCCAGCAGAGATGAGTACGAGGCCCACCAGGAGAGGGTTCTGGCCCGCATCTCCaaacacaacaaccagcaggcCCTGTCCCACAGCATCGAGGAGGGCCTCAAGATACAGGCCATGAACAGGCTGCAGCGAGGGAAGAAGCACCAGCTGGAGAACGGGAGTGGGCTGGAGGACAACGGTGACTCCTCCCACTGCAGCAACGCCTCCGTCCACTCTAACCAGCAGGAGGCGGGGCCGAGCATCAAGCGCACCAAGACGTCAGATGACTCTGGTCTGGACATGGACAACGCTACAGAGAACGGAGGGGGAGGGGACGTGGCCATGGACGGAGCCAGCGAGATAGAACTGGTGTTCTGTCCTCATCCTACGCTCATGGACAAGGAGGACACCGTGCAGACCAGTGTTGAGTTTGTTCCCAGGTACATCAAGACGTCGGGTAACGCCACAGTGGACCACCTGTCTAAGTACCTGGCTGTGCGTCTGGCTCTGGAGGAACTGAGGAAGAACGGAGAGGCCAGCCCTGTCAATGTAGACGCTGCCTCAGAGAAACAATACACCATTTATATCCCTACAGCCAACGGCCAGTTCACGGTGCTGAACGGGTCTTTCTCTCTGGAGCTTGTCAGTGAGAAGTACTGGAAGGTGAACAAACCCATGGAGCTGTACTTCGCCCCCACCAAGGAGCACAAGTAGACCGCCTGGAGTACACCTGGGGGGGTAGACCGCCTGGAGTACACCTGGAGCACACCTGGGGGGTAGACCACCTGGAGTACACCTGGGGGGTAGACCACCTGGAGTACACCTGGAGCACACCTGGGGGGGTAGACCACCTGGAGCACACCTGGGG
>XM_036986770.1
CGTCAGTGTTTGTGCTGCTGGCAGAATACTCGTCTGGTTCGTCTGTATCCACAACACGTTGGGAGTATGACACAGACAGTGCAGACGAATGGGGTGCAGCCCCTCAGTAAGACATGGGAACTCAGTCTGTATGAGCTACAGAGGACTCCACAGgAGGCCATCACAGATGGGCTGGAGATAGCGGTGTCTCCCAGGAGCCTCCACAGTGAGCTGATGTGTCCCATCTGTCTGGACATGCTGAAGAACACCATGACAACCAAGGAATGTCTGCACCGCTTCTGTGCCGACTGCATCATCACCGCCCTCCGATCAGGCAACAAGGAATGCCCTACGTGCAGGAAGAAGCTGGTGTCTAAGCGGTCCCTGCGGCCGGACCCTAACTTTGATGCCCTCATCAGTAAGATCTACCCCAGCAGAGATGAGTACGAGGCCCACCAGGAGAGGGTTCTGGCCCGCATCTCCaaacacaacaaccagcaggcCCTGTCCCACAGCATCGAGGAGGGCCTCAAGATACAGGCCATGAACAGGCTGCAGCGAGGGAAGAAGCACCAGCTGGAGAACGGGAGTGGGCTGGAGGACAACGGTGACTCCTCCCACTGCAGCAACGCCTCCGTCCACTCTAACCAGGAGGCGGGGCCGAGCATCAAGCGCACCAAGACGTCAGATGACTCTGGTCTGGACATGGACAACGCTACAGAGAACGGAGGGGGAGGGGACGTGGCCATGGACGGAGCCAGCGAGATAGAACTGGTGTTCTGTCCTCATCCTACGCTCATGGACAAGGAGGACACCGTGCAGACCAGTGTTGAGTTTGTTCCCAGGTACATCAAGACGTCGGGTAACGCCACAGTGGACCACCTGTCTAAGTACCTGGCTGTGCGTCTGGCTCTGGAGGAACTGAGGAAGAACGGAGAGGCCAGCCCTGTCAATGTAGACGCTGCCTCAGAGAAACAATACACCATTTATATCCCTACAGCCAACGGCCAGTTCACGGTGCTGAACGGGTCTTTCTCTCTGGAGCTTGTCAGTGAGAAGTACTGGAAGGTGAACAAACCCATGGAGCTGTACTTCGCCCCCACCAAGGAGCACAAGTAGACCGCCTGGAGTACACCTGGGGGGGTAGACCGCCTGGAGTACACCTGGAGCACACCTGGGGGGTAGACCACCTGGAGTACACCTGGGGGGTAGACCACCTGGAGTACACCTGGAGCACACCTGGGGGGGTAGACCACCTGGAGCACACCTGGGG
>XR_005053008.1
CGTCAGTGTTTGTGCTGCTGGCAGAATACTCGTCTGGTTCGTCTGTATCCACAACACGTTGGGAGTATGACACAGACAGTGCAGACGAATGGGGTGCAGCCCCTCAGTAAGACATGGGAACTCAGTCTGTATGAGCTACAGAGGACTCCACAGgAGGCCATCACAGATGGGCTGGAGATAGCGGTGTCTCCCAGGAGCCTCCACAGTGAGCTGATGTGTCCCATCTGTCTGGACATGCTGAAGAACACCATGACAACCAAGGAATGTCTGCACCGCTTCTGTGCCGACTGCATCATCACCGCCCTCCGATCAGGCAACAAGGAATGCCCTACGTGCAGGAAGAAGCTGGTGTCTAAGCGGTCCCTGCGGCCGGACCCTAACTTTGATGCCCTCATCAGTAAGATCTACCCCAGCAGAGATGAGTACGAGGCCCACCAGGAGAGGGTTCTGGCCCGCATCTCCaaacacaacaaccagcaggcCCTGTCCCACAGCATCGAGGAGGGCCTCAAGATACAGGCCATGAACAGGCTGCAGCGAGGGAAGAAGCACCAGCTGGAGAACGGGAGTGGGCTGGAGGACAACGGTGACTCCTCCCACTGCAGCAACGCCTCCGTCCACTCTAACCAGCAGGAGGCGGGGCCGAGCATCAAGCGCACCAAGACGTCAGATGACTCTGGTCTGGACATGGACAACGCTACAGAGAACGGAGGGGGAGGGGACGTGGCCATGGACGGAGCCAGCGAGATAGAACTGGTGTTCTGTCCTCATCCTACGCTCATGGACAAGGAGGACACCGTGCAGACCAGTGTTGAGTTTGTTCCCAGGTACATCAAGACGTCGGGTAACGCCACAGTGGACCACCTGTCTAAGTACCTGGCTGTGCGTCTGGCTCTGGAGGAACTGAGGAAGAACGGAGAGGCCAGCCCTGTCAATGTAGACGCTGCCTCAGAGAAACAATACACCATTTATATCCCTACAGCCAACGGCCAGTTCACGGTGCTGAACGGGTCTTTCTCTCTGGAGCTTGTCAGTGAGAAGTACTGGAAGGTGAACAAACCCATGGAGCTGTACTTCGCCCCCACCAAGGAGCACAAGTAGACCGCCTGGAGTACACCTGGGGGGGTAGACCGCCTGGAGTACACCTGGAGCACACCTGGGGGGGTAGACCACCTGGAGCACACCTGGGGGGGTAGACCAACTGGAGCACACCTGGGGGGGTAGACCAACTGGAGTACACCTGTGGGGGTAGACCAACTGGAGTACACCTGGGGGTAGATCACCTGGAGTACACCTGGGGGTAGATCACCTGGAGTACACCTGGGGGTAGATCACCTGGAGTACACCTggggcaccctatttcctatgtagggctttggccaaaagtagtgcactatatagggaatagggtgccctttagGACACAACCCTGGATGAGACCTGCCAGGAGGACGAGGTGTCTAATGGACTCTCAACAtctatacatctctctctacatctctctctctctctctctctctctctctctacatctccctctctctctacatctctctttctctacatctctctctc

Function

NR:

description
E3 ubiquitin-protein ligase RING2

GO:

id name namespace
GO:0036353 histone H2A-K119 monoubiquitination biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0009948 anterior/posterior axis specification biological_process
GO:0033339 pectoral fin development biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:1902254 negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0071339 MLL1 complex cellular_component
GO:0035102 PRC1 complex cellular_component
GO:0016604 nuclear body cellular_component
GO:0003682 chromatin binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K10695 RNF1_2; E3 ubiquitin-protein ligase RNF1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986769.1 False 1255 mRNA 0.58 8 90374071 90397178
XM_036986770.1 False 1252 mRNA 0.58 8 90374071 90397178
XR_005053008.1 True 1575 mRNA 0.56 9 90374071 90397563

Neighbor

gene id symbol gene type direction distance location
LOC110515626 LOC108444490 coding upstream 78721 90228661 ~ 90295350 (+)
st6galnac3 LOC106591001 coding upstream 279454 90031024 ~ 90108312 (+)
rabggtb rabggtb coding upstream 383066 89975532 ~ 89991005 (+)
acadm acadm coding upstream 399807 89967509 ~ 89974264 (+)
LOC118965661 NA coding upstream 421387 89952616 ~ 89952684 (+)
LOC118965588 NA coding downstream 1036 90398599 ~ 90400473 (+)
LOC110517228 LOC106597294 coding downstream 42237 90439800 ~ 90545258 (+)
LOC110531056 LOC106591834 coding downstream 194427 90591990 ~ 90652705 (+)
zgc:162816 LOC106569720 coding downstream 260748 90658311 ~ 90674864 (+)
LOC110530875 rpl37a coding downstream 302625 90700188 ~ 90709778 (+)
G760715 NA non-coding upstream 30007 90343210 ~ 90344064 (+)
G760692 NA non-coding upstream 99877 90273649 ~ 90274194 (+)
G760681 NA non-coding upstream 130265 90242398 ~ 90243806 (+)
G760667 NA non-coding upstream 146084 90227294 ~ 90227987 (+)
G760742 NA non-coding downstream 21823 90419386 ~ 90420839 (+)
G760743 NA non-coding downstream 21996 90419559 ~ 90420283 (+)
G760773 NA non-coding downstream 102482 90500045 ~ 90502213 (+)
G760788 NA non-coding downstream 142541 90540104 ~ 90541147 (+)
G760794 NA non-coding downstream 165104 90562667 ~ 90562894 (+)
G760623 NA other upstream 165112 90160270 ~ 90208959 (+)
G759892 NA other upstream 677164 89696420 ~ 89696907 (+)
LOC118965583 LOC106569839 other upstream 714724 89560138 ~ 89659347 (+)
slc25a24l LOC106569755 other upstream 1279677 89074624 ~ 89139486 (+)
G759598 NA other upstream 1512243 88861079 ~ 88861828 (+)
ndufb3 ndufb3 other downstream 339728 90737231 ~ 90743084 (+)
G760857 NA other downstream 372554 90770117 ~ 90771037 (+)
G761244 LOC106569734 other downstream 555429 90952992 ~ 90972563 (+)
G761280 NA other downstream 621975 91007569 ~ 91040568 (+)

Expression


Co-expression Network