LOC118965588


Basic Information

Item Value
gene id LOC118965588
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 90398599 ~ 90400473 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053009.1
ATTCCTTACTCTACATGTCAgagtatgttctctctctctctctacatcgctCTCTCCAGGGCTGTCTACCTGCTTACCTGTGTTTAGGTCCTAATACCGAGGTGGTACCTGGTAGTTTCAGGGCCTTCTACCTGCTACCTGCTCTCTGTGTTCAGGTCCTAATAcgggggtggtacctggtagttTCAGGGCCTTCTACCTGCTACCTGCTTACCTGTGTTTAGGTCCTAATACCGAGGTGGTACCTGGTAGTTTCAGGGCCTTCTACCTGCTACCTGCTCTCTGTGTTCAGGTCCTAATAcgggggtggtacctggtagttTCAGGGCCTTCTACCTGCTACCTGCTCTCTGTGTTTAGGTCCTAATACCGAGGTGGTACCTGGTAGTTTCAGGGCCTTCTACCTGCTACCTGCTCTCTGTGTTTAGGTCCTAATACCGAGGTGGTACCTGGTAGTTTCAGGGGCTTCTACCTGCTCTGGATAACTGTGGCTGCTTCAGGATGTTGTATGGTCTTTTTGTATCTGGGGGACGGCGAACTGGGTTGGGGACGGGGTGGGATGTGTTTTGGGATATATTAGCGGTGTTTCCGTACAGAGAACTaatgtttttgttgtgtttttaAAAACATGTGCAGCAGAGAGGTCATGAAGCTGTTTTCTATAAACCCACAATCCTGTTGTATTTGTTGACATTGTGtgactcaaatggcaccctatttccctatgtagtgcactacttttgacaagggcccatagggaatagagtgcacttTAGGACAGAAccatattgatgtcacttcaCCTGACTGATCTGGGAGCCATGACAACATATCATTGGTTAAATCATCACAGTGGATGGAGTAaggtctactgtccctctcctgttccctTTAACCAAAATGGCAAACTAGGGCTTTGATACATAATAATTAGGGTGCTCCAATGACAAACAAACGTCTGCTATGACATTATGTTATAGTAACCTGAAGAGACAGACTTCATCTCTTTGTTTTCCTTCTCTAGTCTGCTTGGCTCTCATTCTGTTCTCCTAGAAAACGCTTGATGTTAACagcagggttgggctcaattcctCTTCACTTCAATCAGATCAGGAAGTGGAATAATCTCTAAATCTTCCATCTCCCTTAGTCGGATGAATCTCTTCTGTGCTGTGACTTCTTCAAGGATCCAGTTGTTTTTTTGAAAACAATGAACAATTTTCTATTCCTGATTTGAGTTTGAATCCACCTCCTCCTGAATTGATTAAGGCTAAAATTGACCCCTAACCCTGCTTCACTGAAACATTTCATTAGCTCAGCGGGCTAACAGTCCAGTTCAATACAACTAGGCTGGGTATTCTTTCTGTGTATTGTCCAGGACCTTTGTTCATGCCAACATCTCAACCACATTTTGGGAGAAAGAATGAATGAATCGTTCATTAACAGGTCAGACGTCATCAGCTGTATGGAAGTAATGTCTGTACATAAACCAACCAGCTCCATTCATCATCTTCAAGCTTAGTGTGAGATAGAAGAGGGACCCAAATCGTGTTTTctcccccaaaaaaatgtttcaGAACGACGATACCGTGGAAGAAAAATGTGCAAATGTACTTTTTAGAAGCATGTTCAGTTTTACAGTTTGACAACATCCTTTGTATAAATATCAGTTATTATTGTTGAAAGTGTAAATGGAAATACTTGTTtggaaaataaacaaaacaatgtgTGTTCATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053009.1 True 1738 mRNA 0.43 2 90398599 90400473

Neighbor

gene id symbol gene type direction distance location
LOC110530899 LOC106569745 coding upstream 1036 90374071 ~ 90397563 (+)
LOC110515626 LOC108444490 coding upstream 103249 90228661 ~ 90295350 (+)
st6galnac3 LOC106591001 coding upstream 303982 90031024 ~ 90108312 (+)
rabggtb rabggtb coding upstream 407594 89975532 ~ 89991005 (+)
acadm acadm coding upstream 424335 89967509 ~ 89974264 (+)
LOC110517228 LOC106597294 coding downstream 39327 90439800 ~ 90545258 (+)
LOC110531056 LOC106591834 coding downstream 191517 90591990 ~ 90652705 (+)
zgc:162816 LOC106569720 coding downstream 257838 90658311 ~ 90674864 (+)
LOC110530875 rpl37a coding downstream 299715 90700188 ~ 90709778 (+)
pecr pecr coding downstream 320674 90721147 ~ 90736113 (+)
G760734 NA non-coding upstream 11619 90382732 ~ 90386980 (+)
G760715 NA non-coding upstream 54535 90343210 ~ 90344064 (+)
G760692 NA non-coding upstream 124405 90273649 ~ 90274194 (+)
G760681 NA non-coding upstream 154793 90242398 ~ 90243806 (+)
G760742 NA non-coding downstream 18913 90419386 ~ 90420839 (+)
G760743 NA non-coding downstream 19086 90419559 ~ 90420283 (+)
G760773 NA non-coding downstream 99572 90500045 ~ 90502213 (+)
G760788 NA non-coding downstream 139631 90540104 ~ 90541147 (+)
G760794 NA non-coding downstream 162194 90562667 ~ 90562894 (+)
G760623 NA other upstream 189640 90160270 ~ 90208959 (+)
G759892 NA other upstream 701692 89696420 ~ 89696907 (+)
LOC118965583 LOC106569839 other upstream 739252 89560138 ~ 89659347 (+)
slc25a24l LOC106569755 other upstream 1304205 89074624 ~ 89139486 (+)
G759598 NA other upstream 1536771 88861079 ~ 88861828 (+)
ndufb3 ndufb3 other downstream 336818 90737231 ~ 90743084 (+)
G760857 NA other downstream 369644 90770117 ~ 90771037 (+)
G761244 LOC106569734 other downstream 552519 90952992 ~ 90972563 (+)
G761280 NA other downstream 619065 91007569 ~ 91040568 (+)

Expression


Co-expression Network