LOC110517228 (LOC106597294)


Basic Information

Item Value
gene id LOC110517228
gene name LOC106597294
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 90439800 ~ 90545258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986771.1
actcctcctcttctcaagGCGTTCCGTCCAATGCGCGCTCCCGGGTTGGCTCGGGGGTTGTAACGGGCTAACGGAATTAGAACATTGACAGAGCTCCGGTTTCATCCATCTTCTGAAGTTCAGTTCGGAGGTTCGGGTTGGAGACGGTTTGGGGTGATTTGGGTTTGAAAGTTTAGTGTTAACCGAATAAACAGCCATGGAGGCTCGTGGAGTTCTCTCCGTTCTGTGCGTCGGTGCGATGTTTGCCGTGGCGCTCGCACAGCAGACCGACAGACCCAAGTTCTGGGagtgTCCGGTGGACCTGTTCTTTGTGCTGGACACGTCTGAGAGTGTTGCTCTGAGGGCCAAACCTCCCAACTTCTACATCGACCAGATCAAGAGCTTTACTGAACGCTTCATCATGGAGCTCAAAGAGAtGCGCCACCCATGTGACCGGTCCCTGACATGGAACTCTGGAGCGCTGCACTACTCTGATGAGATCATCTTAGTGCGCCAGCTGAGTGACATCGCCACCGAGCGCCAGGCGCTCATCAGTGACATCAAGGGCATCAGCTACATCGGCAAGGGAACACACACTGACTGTGCCATCAAGAGAGGCATCGCTGAGCTGCTCATAGGgggcTCCCACTACCAGGAAAATAAGTACATCGTCGTGGTGACGGACGGTCATCCTCTAACAGGTTACAAGGAGCCCTGTGGGGGGATACAGGAAGCTGCCAATGAGGCCAGGCAACACGGGGTTAAAGTCTTCTCTGTCGCCATATCACCTGACCAGGagGACACCAGACTGTCAGTGATTGCTACAGACCAGAACTACAGACAGAACTTCACAGCAGCTGACAACAGTAGATCCACCCAGCTACAGACCATTCGCAGCATCATAGATATGATCACCAATGAGACCAAGGATGTGTGCTGTTCTTTTGACTGCAATGCTAAAGGAGGTCCCAAAGGACCAGTAGGAGACCTCGGGTCCAAGGGTGAAACAGGTAGACAGGGGATGCCAGGCGAGAAGGGAGACATCGGGGTAGAGGGGAACTTGGGAGACCCCGGTCCCGTAGGATACCGTGGAATGAAGGGCGACCGAGGTGGAATAGGCAACAAGGGCGAGAGAGGCCATAAAGGCTACAAGggagaCAAAGGACAACAGGGGACAGATGGAGTTGATGGACGTAAGGGTGATCCAGGGTTTCCTGGTCTAGCCGGCTGTAAAGGTTCCCCAGGACCTGACGGCTCACAAGGAGACGGAGGTCCTAAGGGAGATCCTGGTCCATACGGAACCAAAGGAGCTAAGGGTGATCGGGGGAAAAACGGAGAACCAGGACGACCCGGTAACTACGGACCGCCCGGAACcaagGGTACACTGGGCCCAAAAGGAGCCAATGGGGACAAAGGACAGCGGGGGGATGATGGAGCACCCGGACCGGACGGCCTCCGAGGAGACAAAGGAACCCCAGGAGAGAAAGGAGAACAAGGAACCCGTGGAAACAGAGGACCAAGAGGAGATTTGGGTGACCCAGGACCTCGTGGAGATCAGGGCAGAGAGGGTTCATCTGGAGCCAATGGAGAGCCTGGCGACATCGGCAGGGCGGGGTCTCCAGGATACAGAGGAGATGAGGGCGCCCCCGGACCAGAGGGCCCCAAAGGACCAAGAGGGATCAAAGGAGCTCCCGGAGACAGAGGCCAGATCGGagcgaggGGAGAAGATGGTGCACCTGGAAATGGAACTGAGGGTTGTCATGGTTTCCAGgGTTACCCCGGCCCACGAGGAGGTACTGGAGAGCCGGGCGGAAAGGGAACCCCAGGACCTAAAGGAGACGACGGAGAGCCTGGAGACGCTGGCCTGGACAACAACTCCCCAGGACTCCCAGGGAACAAAGGAGGCAAAGGACACAGAGGACCTGAAGGAAACCcgGGACCAGTCGGGCCTCCGGGACCTGCAGGAGCTGATGAATGTGAGATTCTGGATATCATCATGAAGCTTTGCTCATGCTGTGAGTGTAAGTGTGGGCCCCTGGACCTGGCCTTCATCGTGGACAGTTCTGAGAGTATCGGCTCCACTAACTTCGCTCTAGCTAAGGACTTCATCATCACCGTCATAGACCGCCTTATTAAGGACCAGCAAGTCCATtttggtTTTAATGAGTCCAGGGTAGGCGTGGTGCAGTACAGTGGGGATGGAGCCCAGGAGGCTGTCAGACTGGGAGACCCCAACATTAACACACTGACTGAGCTCAAAcaGGCGGTGCGGGACCTGCGCTGGCTGGCTGAGGCCACCTATACAGGGGAGGCTCTGCAGTTCTCTCTGACCAACATGATTGACCGTCTGCAGCAGGAGAACCGCGTGGTCTTAGTGCTCACTGACGGACGTTCTGATATCACCAGAGATAAAACACCGCTCAACACACTCTGTGGGAAGGGCATCAAGgtggGTGGTCTGGGAGTGAAGGACTACTCTGGCCGTCAGCCCAACCATGAACAGCTCAGTGCTGTGGTCTGTACGAGCGACCCTAAACCAGGCTTCTCCTTCGTACTGGAGAACTTCGCTGAGCTGCTGGATGACAGCTTCTTACAGAACCTCACCACACGCATCTgtgaagATAAGAAGTGTCCCAACTACAAATGTCCCATCTCCTTCTCAGGGGACACAGACATCGTATTGATGATGGACAGTTCAGCCAGTGTGGGACAGAGGAACTTTGACTCCAGCAAGACCTTCGTCAAGCGTCTGGCTGAGCGCTTCCTGTCTGCAGAGAGGTCCGGCCGTGCTGCCGTGCGTGTCGCCGTGGGCCAGTACAGCCGTGAACGCCGCATGGAGGCGGAGCTGACCTCTAACCTCACCCTGCTGACCAGTAAGATTGAGGCCGCCACCTTCCAGAATGATGGGACTGACGTTACCAAGGCGATGGCCTTCGCCATGGAGAAATTCCAGTCGTCAGGGGGcgggaacaggaagaggaagctAGTGCTGTTCTCTGACGGGAGATCTCAGGGCGTTACCGAGGCGATGCTGGAGAAGCGCGTACGGCTGGTGTCAGAGGCGGGAGTGGAGCTGTACGTTATCACCGTGGGCAACCAGGTGAGCGAGGCCAACCTGCGCTCGCTGGTCAGCAGGGGGAGGAGTTACGATGTCACCTACGCCCAGCGCCACCTGTTCCGCGTCCCAGACTACCCGTCTCTGCTGCGTGGCGTGTTCTACCAGACCGTGTCCCGCAGGGTCTCCCAGGCCTGAGTTCAGGGGCAAGGGCTGGGACCACATGATTTAGAGTTTAGTCTCCCTCATTATGAATATCCATTCATATTTCATCACTCATTTACTGTGTTTTAGTTGGGTTTTTATGTCCGATAATGACAGAAGACAattgtgtgtcagactgtgtaaGAGATTGTGTTAGACTGCATTCATGTGCTCTCAGAATTATCAAGAAAAATCCCAAGCGGAAAACTACTGAAAACCTCTTGTAACAGAAACTAGTTTCAGATGTCTGTAATGAGCTTCCATGTTGTAACATCTTCCTGTCAGACTGTTCCATAATTCCCAGTCAGGCTGTTCCCAGTTCCATAATTCCCAGTCAGGCTGTTCCCAGTTCCATAATTCCCAGTCAGGCTGTTCCCAGTTCCACAATTCCCTGTCAGGCTGTTCCCAGTTCCATAATTCCCTGTCAGGCTGTTCCCAGTTTCATAATTCTCTGTTAGACTGTTCCCAGTTCCATAATTCCAGTCAGACTGTTCCCAGTTCCATAATTCCCAGTCAGACTGTTCCCAGTTCCATTTTTCCCAGTCTGACTGTTCCCAGTTCCATAATTCTCTGTCAGACTGTTCCCAGTTCCATAATTCCCAGTCAGACTGTTCCCAGTTCCATAATTCCCTGTCAGACTGTTCCCAGTTCCATAATTCCTAGTCAGACTGTTCCCAGTTCCATAATTCC

Function

NR:

description
collagen alpha-1(VI) chain-like isoform X1

GO: NA

KEGG:

id description
K06238 COL6A; collagen type VI alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986771.1 True 3928 mRNA 0.54 33 90439800 90545258

Neighbor

gene id symbol gene type direction distance location
LOC118965588 NA coding upstream 39327 90398599 ~ 90400473 (+)
LOC110530899 LOC106569745 coding upstream 42237 90374071 ~ 90397563 (+)
LOC110515626 LOC108444490 coding upstream 144450 90228661 ~ 90295350 (+)
st6galnac3 LOC106591001 coding upstream 345183 90031024 ~ 90108312 (+)
rabggtb rabggtb coding upstream 448795 89975532 ~ 89991005 (+)
LOC110531056 LOC106591834 coding downstream 46732 90591990 ~ 90652705 (+)
zgc:162816 LOC106569720 coding downstream 113053 90658311 ~ 90674864 (+)
LOC110530875 rpl37a coding downstream 154930 90700188 ~ 90709778 (+)
pecr pecr coding downstream 175889 90721147 ~ 90736113 (+)
ndufb3 ndufb3 coding downstream 191973 90737231 ~ 90743084 (+)
G760742 NA non-coding upstream 18961 90419386 ~ 90420839 (+)
G760743 NA non-coding upstream 19517 90419559 ~ 90420283 (+)
G760718 NA non-coding upstream 39328 90362653 ~ 90400472 (+)
G760734 NA non-coding upstream 52820 90382732 ~ 90386980 (+)
G760715 NA non-coding upstream 95736 90343210 ~ 90344064 (+)
G760794 NA non-coding downstream 17409 90562667 ~ 90562894 (+)
G760802 NA non-coding downstream 39858 90585116 ~ 90585652 (+)
G760817 NA non-coding downstream 53783 90599041 ~ 90599784 (+)
G760832 NA non-coding downstream 112549 90657807 ~ 90658118 (+)
G760837 NA non-coding downstream 115973 90661231 ~ 90661513 (+)
G760623 NA other upstream 230841 90160270 ~ 90208959 (+)
G759892 NA other upstream 742893 89696420 ~ 89696907 (+)
LOC118965583 LOC106569839 other upstream 780453 89560138 ~ 89659347 (+)
slc25a24l LOC106569755 other upstream 1345406 89074624 ~ 89139486 (+)
G760857 NA other downstream 224859 90770117 ~ 90771037 (+)
G761244 LOC106569734 other downstream 407734 90952992 ~ 90972563 (+)
G761280 NA other downstream 474280 91007569 ~ 91040568 (+)

Expression


Co-expression Network