zgc:162816 (LOC106569720)


Basic Information

Item Value
gene id zgc:162816
gene name LOC106569720
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 90658311 ~ 90674864 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986780.1
GAGGACGCGCTCTCCCTCAGCTATGTTTGGTCACACAGGGACACCATAGGATGGACCTTGACCACAGCTGATTAGGTGCTGACTAGTTCGAGTGAGTTAGTTAGTTTACATCTGGAATAAAGGTTTGTGTCTGTGCAATTCATCTCAGCCGCGCTGGACAAGAGACTGATACATCACTTTTtgtgatggAGGGGGACCATATAACTACCCTGTCTACTCCTGTAATGGTTGTGGATGTTGATATAGTGAAGAGGAATGCTGAGAAAATGAGAGAACACTGGACCAAGCTGGGAGTCACTCTTCGACCCCACATGAAGACACACAAGAccctGAGTTGTATCGTCGTGTCAACACTGGCAGAAGCCGGTTTCTATGCCGACCACGGATATGACGACATCCTGTATGCCTACTCTGTGCCCTTTGACAAGgtgtTGTTGGACCACAGAGATGCTCTGGAGCAGCTGAGGAAGAGACCACTGACAGACAGGCGGGTGTGGCACGTCTGGCTCAAACTGGACTGTGACAACGGAAGAGCGGGTGTTCTGCACTCGGAGCCAGAGGCACTGAGATTGGCCCAGGCCATCTCTGAGTCAGAGGGGGTGGAGCTGACGGGGGTGTACGCCCACTGTGGGAACACCTATGGCTGCAGAGGGGCGGAGCAAATACATGCTGTTGCCCATGAAACAACCACCCTCGTACTGCAGTTCATGGAGAAactgaaGGCTGTGGGAATCAGCTGTAAGTCCAGTATAGGCTCCACCCCCTCCTGCAGCCAGCCAATCAGTGACATGGCCAAGCTCAGCGAGGTGCATCCTGGGAACTACGTCTtctttgACGTGCAGCAGTCTGTGATTGGTTCGTGCGGTCTGGAGGACGTGGCTGTCAGGGTTCTGAGCAGGGTTATAGGTCACTCTCCTCACAGAAACCAGCTGCTCCTCGACTGTGGCTGGTCTGCTCTCAGTCTCGATGGAGCTGGGAAACTGCCCACTGGATACGCTGTTATAGAGGGACATCCTGACCTCagGTTGTTGTCTATGACCCAGGAGCATGGCAGAGTGGAGCCTCTCTCAGGACAACTGGACTACAGCAGATACCCCCTGGGAACACTACTGACTATTATACCTTACCATGCTTGTGCAACAGCCATGATGCATTCTGTGTACTACGTCCACTCTGGAGGTCGGCTGGTGGGAAAGTGGACACCCACACGTGGCTGGTGATCAAAGGAGCATCATGGGAAATGTAGtaatgtgtgggtgtgtagtccTGGAGGGAATCAGCCTGAGCAAAGCTGGACAGAATCACTAATCACCTTGAAGCTCAAATGACTTATTATGTGATGTTGGGAAATGTCCTTCCTGATGTCATCGTTTCTATTGTTGTCCGTCCTGCATTGGGGCGGTACTATACAGCCGTCACTGACACTAAACCATGTTTTACACTAATAAATGAACCACTTTCCTTAAACCTT
>XM_036986778.1
GGACGCGCTCTCCCTCAGCTATGTTTGGTCACACAGGGACACCATAGGATGGACCTTGACCACAGCTGATTAGGTGCTGACTAGTTCGAGTGAGTTAGTTAGTTTACATCTGGAATAAAGGTTTGTGTCTGTGCAATTCATCTCAGCCGCGCTGGACAAGAGACTGATACATCACTTTTtgtgatggAGGGGGACCATATAACTACCCTGTCTACTCCTGTAATGGTTGTGGATGTTGATATAGTGAAGAGGAATGCTGAGAAAATGAGAGAACACTGGACCAAGCTGGGAGTCACTCTTCGACCCCACATGAAGACACACAAGAccctGAGTTGTATCGTCGTGTCAACACTGGCAGAAGCCGGTTTCTATGCCGACCACGGATATGACGACATCCTGTATGCCTACTCTGTGCCCTTTGACAAGGTTGAGCGCTGTGCGGTGCTGGCAGAGcgtctgtctctgttccaggtgtTGTTGGACCACAGAGATGCTCTGGAGCAGCTGAGGAAGAGACCACTGACAGACAGGCGGGTGTGGCACGTCTGGCTCAAACTGGACTGTGACAACGGAAGAGCGGGTGTTCTGCACTCGGAGCCAGAGGCACTGAGATTGGCCCAGGCCATCTCTGAGTCAGAGGGGGTGGAGCTGACGGGGGTGTACGCCCACTGTGGGAACACCTATGGCTGCAGAGGGGCGGAGCAAATACATGCTGTTGCCCATGAAACAACCACCCTCGTACTGCAGTTCATGGAGAAactgaaGGCTGTGGGAATCAGCTGTAAGTCCAGTATAGGCTCCACCCCCTCCTGCAGCCAGCCAATCAGTGACATGGCCAAGCTCAGCGAGGTGCATCCTGGGAACTACGTCTtctttgACGTGCAGCAGTCTGTGATTGGTTCGTGCGGTCTGGAGGACGTGGCTGTCAGGGTTCTGAGCAGGGTTATAGGTCACTCTCCTCACAGAAACCAGCTGCTCCTCGACTGTGGCTGGTCTGCTCTCAGTCTCGATGGAGCTGGGAAACTGCCCACTGGATACGCTGTTATAGAGGGACATCCTGACCTCagGTTGTTGTCTATGACCCAGGAGCATGGCAGAGTGGAGCCTCTCTCAGGACAACTGGACTACAGCAGATACCCCCTGGGAACACTACTGACTATTATACCTTACCATGCTTGTGCAACAGCCATGATGCATTCTGTGTACTACGTCCACTCTGGAGGTCGGCTGGTGGGAAAGTGGACACCCACACGTGGCTGGTGATCAAAGGAGCATCATGGGAAATGTAGtaatgtgtgggtgtgtagtccTGGAGGGAATCAGCCTGAGCAAAGCTGGACAGAATCACTAATCACCTTGAAGCTCAAATGACTTATTATGTGATGTTGGGAAATGTCCTTCCTGATGTCATCGTTTCTATTGTTGTCCGTCCTGCATTGGGGCGGTACTATACAGCCGTCACTGACACTAAACCATGTTTTACACTAATAAATGAACCACTTTCCTTAAACCTT
>XM_036986779.1
GGACGCGCTCTCCCTCAGCTATGTTTGGTCACACAGGGACACCATAGGATGGACCTTGACCACAGCTGATTAGGTGCTGACTAGTTCGAGTGAGTTAGTTAGTTTACATCTGGAATAAAGGTTTGTGTCTGTGCAATTCATCTCAGCCGCGCTGGACAAGAGACTGATACATCACTTTTtgtgatggAGGGGGACCATATAACTACCCTGTCTACTCCTGTAATGGTTGTGGATGTTGATATAGTGAAGAGGAATGCTGAGAAAATGAGAGAACACTGGACCAAGCTGGGAGTCACTCTTCGACCCCACATGAAGACACACAAGAcccttgagtgtgGTGATATAATGACAGGTGGGTCTAGGAGTTGTATCGTCGTGTCAACACTGGCAGAAGCCGGTTTCTATGCCGACCACGGATATGACGACATCCTGTATGCCTACTCTGTGCCCTTTGACAAGgtgtTGTTGGACCACAGAGATGCTCTGGAGCAGCTGAGGAAGAGACCACTGACAGACAGGCGGGTGTGGCACGTCTGGCTCAAACTGGACTGTGACAACGGAAGAGCGGGTGTTCTGCACTCGGAGCCAGAGGCACTGAGATTGGCCCAGGCCATCTCTGAGTCAGAGGGGGTGGAGCTGACGGGGGTGTACGCCCACTGTGGGAACACCTATGGCTGCAGAGGGGCGGAGCAAATACATGCTGTTGCCCATGAAACAACCACCCTCGTACTGCAGTTCATGGAGAAactgaaGGCTGTGGGAATCAGCTGTAAGTCCAGTATAGGCTCCACCCCCTCCTGCAGCCAGCCAATCAGTGACATGGCCAAGCTCAGCGAGGTGCATCCTGGGAACTACGTCTtctttgACGTGCAGCAGTCTGTGATTGGTTCGTGCGGTCTGGAGGACGTGGCTGTCAGGGTTCTGAGCAGGGTTATAGGTCACTCTCCTCACAGAAACCAGCTGCTCCTCGACTGTGGCTGGTCTGCTCTCAGTCTCGATGGAGCTGGGAAACTGCCCACTGGATACGCTGTTATAGAGGGACATCCTGACCTCagGTTGTTGTCTATGACCCAGGAGCATGGCAGAGTGGAGCCTCTCTCAGGACAACTGGACTACAGCAGATACCCCCTGGGAACACTACTGACTATTATACCTTACCATGCTTGTGCAACAGCCATGATGCATTCTGTGTACTACGTCCACTCTGGAGGTCGGCTGGTGGGAAAGTGGACACCCACACGTGGCTGGTGATCAAAGGAGCATCATGGGAAATGTAGtaatgtgtgggtgtgtagtccTGGAGGGAATCAGCCTGAGCAAAGCTGGACAGAATCACTAATCACCTTGAAGCTCAAATGACTTATTATGTGATGTTGGGAAATGTCCTTCCTGATGTCATCGTTTCTATTGTTGTCCGTCCTGCATTGGGGCGGTACTATACAGCCGTCACTGACACTAAACCATGTTTTACACTAATAAATGAACCACTTTCCTTAAACCTT
>XM_036986777.1
ACGCGCTCTCCCTCAGCTATGTTTGGTCACACAGGGACACCATAGGATGGACCTTGACCACAGCTGATTAGGTGCTGACTAGTTCGAGTGAGTTAGTTAGTTTACATCTGGAATAAAGGTTTGTGTCTGTGCAATTCATCTCAGCCGCGCTGGACAAGAGACTGATACATCACTTTTtgtgatggAGGGGGACCATATAACTACCCTGTCTACTCCTGTAATGGTTGTGGATGTTGATATAGTGAAGAGGAATGCTGAGAAAATGAGAGAACACTGGACCAAGCTGGGAGTCACTCTTCGACCCCACATGAAGACACACAAGAcccttgagtgtgGTGATATAATGACAGGTGGGTCTAGGAGTTGTATCGTCGTGTCAACACTGGCAGAAGCCGGTTTCTATGCCGACCACGGATATGACGACATCCTGTATGCCTACTCTGTGCCCTTTGACAAGGTTGAGCGCTGTGCGGTGCTGGCAGAGcgtctgtctctgttccaggtgtTGTTGGACCACAGAGATGCTCTGGAGCAGCTGAGGAAGAGACCACTGACAGACAGGCGGGTGTGGCACGTCTGGCTCAAACTGGACTGTGACAACGGAAGAGCGGGTGTTCTGCACTCGGAGCCAGAGGCACTGAGATTGGCCCAGGCCATCTCTGAGTCAGAGGGGGTGGAGCTGACGGGGGTGTACGCCCACTGTGGGAACACCTATGGCTGCAGAGGGGCGGAGCAAATACATGCTGTTGCCCATGAAACAACCACCCTCGTACTGCAGTTCATGGAGAAactgaaGGCTGTGGGAATCAGCTGTAAGTCCAGTATAGGCTCCACCCCCTCCTGCAGCCAGCCAATCAGTGACATGGCCAAGCTCAGCGAGGTGCATCCTGGGAACTACGTCTtctttgACGTGCAGCAGTCTGTGATTGGTTCGTGCGGTCTGGAGGACGTGGCTGTCAGGGTTCTGAGCAGGGTTATAGGTCACTCTCCTCACAGAAACCAGCTGCTCCTCGACTGTGGCTGGTCTGCTCTCAGTCTCGATGGAGCTGGGAAACTGCCCACTGGATACGCTGTTATAGAGGGACATCCTGACCTCagGTTGTTGTCTATGACCCAGGAGCATGGCAGAGTGGAGCCTCTCTCAGGACAACTGGACTACAGCAGATACCCCCTGGGAACACTACTGACTATTATACCTTACCATGCTTGTGCAACAGCCATGATGCATTCTGTGTACTACGTCCACTCTGGAGGTCGGCTGGTGGGAAAGTGGACACCCACACGTGGCTGGTGATCAAAGGAGCATCATGGGAAATGTAGtaatgtgtgggtgtgtagtccTGGAGGGAATCAGCCTGAGCAAAGCTGGACAGAATCACTAATCACCTTGAAGCTCAAATGACTTATTATGTGATGTTGGGAAATGTCCTTCCTGATGTCATCGTTTCTATTGTTGTCCGTCCTGCATTGGGGCGGTACTATACAGCCGTCACTGACACTAAACCATGTTTTACACTAATAAATGAACCACTTTCCTTAAACCTT

Function

NR:

description
PREDICTED: D-threo-3-hydroxyaspartate dehydratase-like

GO: NA

KEGG:

id description
K20498 DSD1; D-serine ammonia-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986780.1 False 1471 mRNA 0.52 10 90658311 90674864
XM_036986778.1 False 1514 mRNA 0.52 10 90658313 90674864
XM_036986779.1 False 1502 mRNA 0.51 10 90658313 90674864
XM_036986777.1 True 1545 mRNA 0.52 10 90658315 90674864

Neighbor

gene id symbol gene type direction distance location
LOC110531056 LOC106591834 coding upstream 5606 90591990 ~ 90652705 (+)
LOC110517228 LOC106597294 coding upstream 113053 90439800 ~ 90545258 (+)
LOC118965588 NA coding upstream 257838 90398599 ~ 90400473 (+)
LOC110530899 LOC106569745 coding upstream 260748 90374071 ~ 90397563 (+)
LOC110515626 LOC108444490 coding upstream 362961 90228661 ~ 90295350 (+)
LOC110530875 rpl37a coding downstream 25324 90700188 ~ 90709778 (+)
pecr pecr coding downstream 46283 90721147 ~ 90736113 (+)
ndufb3 ndufb3 coding downstream 62367 90737231 ~ 90743084 (+)
LOC110530867 LOC106569722 coding downstream 104259 90779123 ~ 90796938 (+)
LOC110530865 LOC106595329 coding downstream 125124 90799988 ~ 90830525 (+)
G760832 NA non-coding upstream 193 90657807 ~ 90658118 (+)
G760817 NA non-coding upstream 58527 90599041 ~ 90599784 (+)
G760802 NA non-coding upstream 72659 90585116 ~ 90585652 (+)
G760794 NA non-coding upstream 95417 90562667 ~ 90562894 (+)
G760788 NA non-coding upstream 117164 90540104 ~ 90541147 (+)
G760844 NA non-coding downstream 17561 90692425 ~ 90693044 (+)
G760871 NA non-coding downstream 53665 90728529 ~ 90729541 (+)
G760872 NA non-coding downstream 56126 90730990 ~ 90732388 (+)
G760886 NA non-coding downstream 130276 90805140 ~ 90805628 (+)
G760887 NA non-coding downstream 130766 90805630 ~ 90862789 (+)
G760718 NA other upstream 257839 90362653 ~ 90400472 (+)
G760623 NA other upstream 449352 90160270 ~ 90208959 (+)
G759892 NA other upstream 961404 89696420 ~ 89696907 (+)
LOC118965583 LOC106569839 other upstream 998964 89560138 ~ 89659347 (+)
slc25a24l LOC106569755 other upstream 1563917 89074624 ~ 89139486 (+)
G760857 NA other downstream 95253 90770117 ~ 90771037 (+)
G761244 LOC106569734 other downstream 278128 90952992 ~ 90972563 (+)
G761280 NA other downstream 344674 91007569 ~ 91040568 (+)

Expression


Co-expression Network