LOC110530867 (LOC106569722)


Basic Information

Item Value
gene id LOC110530867
gene name LOC106569722
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 90779123 ~ 90796938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053010.1
AGCTAGTTTATGTTTTtaccattttttaaatgtacttgcTCAGTTGGTACGCACCAACATTCAAAACAGCAGCTACCACAATGCACTGCGCTTAGGGTGTGTCGTAAAACTTGGTCCGgtaagaaaagaggagaggaaagtttTTAGCAAACAACAAAACAAGTCTTTCAAGTAGCTCGCTGTTTGTAGAAAATTTGATTTAGGTTTAGCCATTGGTTTTCGTTCTACATGGGACTGTGAAATTCGTAGAGTTTATCTGCTACATAACTCACCGTTGAcagatagctagctagcctaaTAACATAGATGGTAAAAACACAGAACTAGATACAGCAGAGATGGTATCAATCAACCCAGTGGACTCTGATCCGGTACTCGGGATCAACGTTGTGGTGAAGGATGAAGACGGAGAGGTAGTGGATTATTTAGCTGAACCAAGGCTGTCCTGGTGTGTGAAAGAGGAACAAGAAGAGGTACCGTGTCACCTAGAAGAACACGAAGACCCTTGATTTACTACCGCCAGCTGTCCTGCCAGTACCACAATTACTTGTGTTTTCCTGGGAGATGCAGCTTTCCCTCCACATGAGAACCTCATGCGCCCGGATCCAGGTGTCTCAATAAACCTGGGCGTACCTTGAACCATCACCACTCTCGTTCTCACAGGCAGAGAATGCATTCGGCATTATGGCTTCGATGAGGATTCTTGGTCGTCCAATCAAGTGTAGCTCTGAAAAGGCTAAGGACGTTTGACCCTCCACAACTACCTGTCTTCCTTAGATGAAGCTCATCAGCCAAACAGAAAttaccaaaaatatgtggacacctgctggtccaacatctcattccaaaatcatgggcattaatatggagttgttcccccccctttgctgctataacagcctccactc
>XM_021614155.2
ggagaggaaagtttTTAGCAAACAACAAAACAAGTCTTTCAAGTAGCTCGCTGTTTGTAGAAAATTTGATTTAGGTTTAGCCATTGGTTTTCGTTCTACATGGGACTGTGAAATTCGTAGAGTTTATCTGCTACATAACTCACCGTTGAcagatagctagctagcctaaTAACATAGATGGTAAAAACACAGAACTAGATACAGCAGAGATGGTATCAATCAACCCAGTGGACTCTGATCCGGTACTCGGGATCAACGTTGTGGTGAAGGATGAAGACGGAGAGGTAGTGGATTATTTAGCTGAACCAAGGCTGTCCTGGTGTGTGAAAGAGGAACAAGAAGAGGTACCGTGTCACCTAGAAGAACACGGTGGCTGTATAGACCAGGCTATAGATCCTTCAGAATCACTCCAGAAGAATCAGCGGAGTCACACCACTGAAACCAACTACCCTTGCTTAGCCTGTGGGAAGTATTTCTACAACTCATCAACCCTGCGGAGACACATGCGTACTCACACAGGTGAGAGGCCGTATCACTGCTCTGAGTGTGGGCGGAGCTTCAGTCACTCTGGCAACCTGAGGAGTCATCAGGtgatccacacaggagagagaccgtACCACTGTCTGGTCTGTGGCAAGAGCTTCAGTCAGCCAGGAGGCCTGGCCaagcaccagagaacacacacaggagagaagccattcCACTGCACTTTCACAGAGTGCGGCAAGAGTTTCTCCAAGTTAGAACACCTACAGATACACCACaggactcacacaggagagaagccttacccctGCTCTGCCTCTGACTGTGGAAGGAGATTCTCCAACTCAGGCCAGCTGATCCAACACATGCGTACTCATACAGGAGAGAGGCCGTACCACTGCTCAGAGTGTCTGAAGACCTTCTCCCACCCAGGAGCTCTAAAGGACCACCAGAGGATTCACTCAGGAGAGAGACCCTACGTCTGTGCTGTCTCGGCCTGCGGTAAGATGTTTATAAACTCTGGGGCTCTGAAAAAGCACAGCCAGACCCACACAGGGGAAAAacctcactgctgctctgactgtgggagagGCTTCTCCCAGCTGGCTCACCTCCAGGCTCATCAGAGGACTCACACAGGGGAAAGACCCTATCATTGCTCCCTCTGTTGGAAGAGCTTTATCCAACAAGGGCATCTGGACAGGCATAGACGCATCCACCTAGCAGCGGACACACCTGGAGATCAGTTATCCCCTAGCATCAGTCCAGATCAGCACATCAGACCGATAGATGATTCACCTGAGGTCTTTGATGAAGAGACTCTACCAGAACAACATGTACATCCTGAATTAATGAGTGACCTTGAATGACTGGTTTGATTGCATAATTCCAGACTGTGTCAATTTTTACACTGTTTTTGCTTGTATCTCACTGCTGCATAAAACCATTGGTGTTATTATTCTGTCAAATATCCTGCAATACAttatgtggatggatggattggatGATTGAATGGATGGAttggaatggatggatggatggatggatggatggatggattggaaTGGATAGATGGAAGAATGGATACTTCAGCTAAACACAACATTTACACACTTTAGTGTTTTCCCTCTCAGTGAATGTTGAACGTTTCATCACAGTCTAGTTGATAACAGCACGACTGGATGTGTTGAACATGTACATGCTCTCATGAAACATGAGTCAAATCAGTTGTTCTACTCTCAACCTTTGTTTAAAACATGGATTTAAAATGAGATAATATAATACATTGAGTTAAATAGTATTTCAATTACTATTATGAGTGAAAATTATGAGGGAAAGATGTGATGCAAGAGGCCTCTAATAAGGATGTGATGCAAGAGGCTTCTAATAATGATGTGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCCTCTAATAAGGATGTGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCCTCTAATAAGGATGTGATGCAAGAGGCTTCTAATAATGATGTGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCTTCTAATAATGATGTGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCTTCTAATGATGATATGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCTTCTAATATGGATGTGATGCAAGAGGCTTCTAATAATGATGTGATGCAAGAGGCTTCTAATAATGATGTGATGCAAGAGGCTTCTAATAATTATGTGATGCAAGAGGCTTCTAATAAGGATTTGATGCAAGAGGCTTCTAATAAGGATGTGATGCAAGAGGCATCTAATATGGATGTGATGCAAGAGGCTTCTAATAATGATGTGATGCAAGAGGCTTCTAATAATGATGTACAGTAAAATGATgtaaaaatacttttttgacatttttacaagtgTATTAAAAATTACAAATGGAAATATTACATCAACATAAG

Function

NR:

description
zinc finger protein 239-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053010.1 False 908 mRNA 0.45 4 90779123 90785701
XM_021614155.2 True 2614 mRNA 0.43 3 90779252 90796938

Neighbor

gene id symbol gene type direction distance location
ndufb3 ndufb3 coding upstream 36039 90737231 ~ 90743084 (+)
pecr pecr coding upstream 43010 90721147 ~ 90736113 (+)
LOC110530875 rpl37a coding upstream 69345 90700188 ~ 90709778 (+)
zgc:162816 LOC106569720 coding upstream 104259 90658311 ~ 90674864 (+)
LOC110531056 LOC106591834 coding upstream 126418 90591990 ~ 90652705 (+)
LOC110530865 LOC106595329 coding downstream 3050 90799988 ~ 90830525 (+)
LOC110530903 LOC106569743 coding downstream 116835 90913773 ~ 90916737 (+)
rgs20 LOC106592360 coding downstream 442948 91239886 ~ 91260968 (+)
G760872 NA non-coding upstream 46735 90730990 ~ 90732388 (+)
G760871 NA non-coding upstream 49582 90728529 ~ 90729541 (+)
G760844 NA non-coding upstream 86079 90692425 ~ 90693044 (+)
G760837 NA non-coding upstream 117610 90661231 ~ 90661513 (+)
G760832 NA non-coding upstream 121005 90657807 ~ 90658118 (+)
G760886 NA non-coding downstream 8202 90805140 ~ 90805628 (+)
G760887 NA non-coding downstream 8692 90805630 ~ 90862789 (+)
G760892 NA non-coding downstream 21737 90818675 ~ 90824470 (+)
G760894 NA non-coding downstream 34003 90830941 ~ 90831758 (+)
G761221 NA non-coding downstream 81357 90878295 ~ 90878639 (+)
G760857 NA other upstream 8086 90770117 ~ 90771037 (+)
G760718 NA other upstream 378651 90362653 ~ 90400472 (+)
G760623 NA other upstream 570164 90160270 ~ 90208959 (+)
G761244 LOC106569734 other downstream 156054 90952992 ~ 90972563 (+)
G761280 NA other downstream 222600 91007569 ~ 91040568 (+)
G761291 NA other downstream 304381 91101319 ~ 91104154 (+)
G761750 NA other downstream 767135 91564073 ~ 91567098 (+)

Expression


Co-expression Network