LOC110531054 (vath)


Basic Information

Item Value
gene id LOC110531054
gene name vath
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 91103722 ~ 91207642 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036986796.1
GGTTGTCGTCCGCCATTAaacccacagaagaagaagaaaaagaatcCTCTTCCTACTGGCTCGTGACGTGCAGAACACCATCACATGATATGTGTCTCGTGACGTCGTCTTGTAGTTTGTCAGCTGTCAGgGAATTATTTATTCTAGTCCAGAGTGGTATTGAACAGGTGTATCAGGATGGATATCCGCGGGGCGGTGGATGCTGCAGTACCCACTAACATCATCGCTGCCAAGGCTGCGGAGGTCAGAGCCAACAAGGTCAACTGGCAGTCATACCTGCAGGGCCAGATGATCTCTGCCGAGGACTGTGAGTTCATTAAGAAGTTTGAAGTGGCTCATTCTGAGGAGAAACAGACCATCCTCACAAATGAAGGACATCAGtgtgccaggaCGTTCCTGAACCTGATGGCTCACATCTCTAAGGAGCAGACTGTCCAGTACATCCTCACCCTAATAGATGATACCCTGCAGGAGAACCACCTAAGGGTGAACATCTTCTTTGACTACGCCAAGAAGACAAAGAACACCGCCTGGTCCTACTTTCTTCCCATGCTCAACCGCCAGGACCTATTTACCGTCCACATGgcgGCCAGGATCATCGCAAAGCTAGCAGCCTGGGGTCGTGACCTGATGGAGGGAAGTGACCTCAACTACTACTTCAACTGGATCAAGACCCAGCTCAGCTCCCAGAAGCTTCATGGTACAGGTCCAGACTCCACAGGACATGGCACTATATCCCCCAGTGACAGCTCCCAGTATGTGCAGTGTGTGGCAGGCTGTCTCCAGCTGATGCTGAGGGTCAATGAGTACAGGTTTGCCTGGGTGGAGGCGGACGGGGTCAACTGcaTCACGGCTGTGCTCAGTAACAAGTGTGGTTTCCAGCTGCAGTACCagatggggttttgtgtgtggcTGCTGGCCTTCAACTCTCAGCTCTGTGAGCAGCTACGCCGTTACAACGTGGTGCCAGCCCTGTCTGACATCCTGCAGGAGTCTGTCAAGGAGAAGGTCACGCGCATCATCCTGGCTGCCTTCAGGAACCTGTTGGAGAAGTCAGCGGATAGGGAGACCCGTCAGGAGTATGCCCTGGCCATGATACAGTGTAAGGTTCTGAAGCAGCTGGAGAATCTGGATCAGCAGAAGTATGATGATGAGGACATCACTGAAGACCTCAAGTTCCTGCTGGAGAGTCTAGGGgagagcgttcaggacctcagTTCGTTTGATGAGTACAGTTCGGAGCTGAAGTCCGGTCGCCTGGAGTGGAGCCCGGTCCACAAGTCAGAGAAGTTCTGGCGTGAGAATGCAGTCCGCCTCAACGAGAAGAACTACGAACTCCTCAAGATCCTTACTCGGCTGTTGGAGGTATCTGATGACCCTCAGGTTATTGCTGTAGCTGCTCATGATGTTGGAGAATACGTCAGACACTACCCTCGGGGGAAACGGGTGATAGAGCAGCTTGGAGGTAAACAGCTGGTGATGAACCACATGCACCATGACGATCAGCTGGTCCGCTACAACGCCCTGCTGGCCGTGCAGAAACTCATGGTCCACAACTGGGAGTACCTGGGGAAGCAGCTTCAGTCATCtgaccagcagcagcaacagGCTGTGGCCGTTAGGACCTGAACTCTAACCCCTGACAACAGGCCATGGCCGCCAGAAGC
>XM_036986797.1
GGTTGTCGTCCGCCATTAaacccacagaagaagaagaaaaagaatcCTCTTCCTACTGGCTCGTGACGTGCAGAACACCATCACATGATATGTGTCTCGTGACGTCGTCTTGTAGTTTGTCAGCTGTCAGgGAATTATTTATTCTAGTCCAGAGTGGTATTGAACAGGTGTATCAGGATGGATATCCGCGGGGCGGTGGATGCTGCAGTACCCACTAACATCATCGCTGCCAAGGCTGCGGAGGTCAGAGCCAACAAGGTCAACTGGCAGTCATACCTGCAGGGCCAGATGATCTCTGCCGAGGACTGTGAGTTCATTAAGAAGTTTGAAGTGGCTCATTCTGAGGAGAAACAGACCATCCTCACAAATGAAGGACATCAGtgtgccaggaCGTTCCTGAACCTGATGGCTCACATCTCTAAGGAGCAGACTGTCCAGTACATCCTCACCCTAATAGATGATACCCTGCAGGAGAACCACCTAAGGGTGAACATCTTCTTTGACTACGCCAAGAAGACAAAGAACACCGCCTGGTCCTACTTTCTTCCCATGCTCAACCGCCAGGACCTATTTACCGTCCACATGgcgGCCAGGATCATCGCAAAGCTAGCAGCCTGGGGTCGTGACCTGATGGAGGGAAGTGACCTCAACTACTACTTCAACTGGATCAAGACCCAGCTCAGCTCCCAGAGCTCCCAGTATGTGCAGTGTGTGGCAGGCTGTCTCCAGCTGATGCTGAGGGTCAATGAGTACAGGTTTGCCTGGGTGGAGGCGGACGGGGTCAACTGcaTCACGGCTGTGCTCAGTAACAAGTGTGGTTTCCAGCTGCAGTACCagatggggttttgtgtgtggcTGCTGGCCTTCAACTCTCAGCTCTGTGAGCAGCTACGCCGTTACAACGTGGTGCCAGCCCTGTCTGACATCCTGCAGGAGTCTGTCAAGGAGAAGGTCACGCGCATCATCCTGGCTGCCTTCAGGAACCTGTTGGAGAAGTCAGCGGATAGGGAGACCCGTCAGGAGTATGCCCTGGCCATGATACAGTGTAAGGTTCTGAAGCAGCTGGAGAATCTGGATCAGCAGAAGTATGATGATGAGGACATCACTGAAGACCTCAAGTTCCTGCTGGAGAGTCTAGGGgagagcgttcaggacctcagTTCGTTTGATGAGTACAGTTCGGAGCTGAAGTCCGGTCGCCTGGAGTGGAGCCCGGTCCACAAGTCAGAGAAGTTCTGGCGTGAGAATGCAGTCCGCCTCAACGAGAAGAACTACGAACTCCTCAAGATCCTTACTCGGCTGTTGGAGGTATCTGATGACCCTCAGGTTATTGCTGTAGCTGCTCATGATGTTGGAGAATACGTCAGACACTACCCTCGGGGGAAACGGGTGATAGAGCAGCTTGGAGGTAAACAGCTGGTGATGAACCACATGCACCATGACGATCAGCTGGTCCGCTACAACGCCCTGCTGGCCGTGCAGAAACTCATGGTCCACAACTGGGAGTACCTGGGGAAGCAGCTTCAGTCATCtgaccagcagcagcaacagGCTGTGGCCGTTAGGACCTGAACTCTAACCCCTGACAACAGGCCATGGCCGCCAGAAGC
>XM_036986798.1
GGTTGTCGTCCGCCATTAaacccacagaagaagaagaaaaagaatcCTCTTCCTACTGGCTCGTGACGTGCAGAACACCATCACATGATATGTGTCTCGTGACGTCGTCTTGTAGTTTGTCAGCTGTCAGgGAATTATTTATTCTAGTCCAGAGTGGTATTGAACAGGTGTATCAGGATGGATATCCGCGGGGCGGTGGATGCTGCAGTACCCACTAACATCATCGCTGCCAAGGCTGCGGAGGTCAGAGCCAACAAGGTCAACTGGCAGTCATACCTGCAGGGCCAGATGATCTCTGCCGAGGACTGTGAGTTCATTAAGAAGTTTGAAGTGGCTCATTCTGAGGAGAAACAGACCATCCTCACAAATGAAGGACATCAGtgtgccaggaCGTTCCTGAACCTGATGGCTCACATCTCTAAGGAGCAGACTGTCCAGTACATCCTCACCCTAATAGATGATACCCTGCAGGAGAACCACCTAAGGGTGAACATCTTCTTTGACTACGCCAAGAAGACAAAGAACACCGCCTGGTCCTACTTTCTTCCCATGCTCAACCGCCAGGACCTATTTACCGTCCACATGgcgGCCAGGATCATCGCAAAGCTAGCAGCCTGGGGTCGTGACCTGATGGAGGGAAGTGACCTCAACTACTACTTCAACTGGATCAAGACCCAGCTCAGCTCCCAGAAGCTTCATGGTACAGGTCCAGACTCCACAGGACATGGCACTATATCCCCCAGTGACAGCTCCCAGTATGTGCAGTGTGTGGCAGGCTGTCTCCAGCTGATGCTGAGGGTCAATGAGTACAGGTTTGCCTGGGTGGAGGCGGACGGGGTCAACTGcaTCACGGCTGTGCTCAGTAACAAGTGTGGTTTCCAGCTGCAGTACCagatggggttttgtgtgtggcTGCTGGCCTTCAACTCTCAGCTCTGTGAGCAGCTACGCCGTTACAACGTGGTGCCAGCCCTGTCTGACATCCTGCAGGAGTCTGTCAAGGAGAAGGTCACGCGCATCATCCTGGCTGCCTTCAGGAACCTGTTGGAGAAGTCAGCGGATAGGGAGACCCGTCAGGAGTATGCCCTGGCCATGATACAGTGTAAGGTTCTGAAGCAGCTGGAGAATCTGGATCAGCAGAAGTATGATGATGAGGACATCACTGAAGACCTCAAGTTCCTGCTGGAGAGTCTAGGGgagagcgttcaggacctcagTTCGTTTGATGAGTACAGTTCGGAGCTGAAGTCCGGTCGCCTGGAGTGGAGCCCGGTCCACAAGTCAGAGAAGTTCTGGCGTGAGAATGCAGTCCGCCTCAACGAGAAGAACTACGAACTCCTCAAGATCCTTACTCGGCTGTTGGAGGTATCTGATGTTAGGGTTAGTTATGTGTTATATGTTCTCCCTCCTCAGGATCCTTACTCCGCTGTTGGAGGTATCTGATGTTAGGGTTAGTTA

Function

NR:

description
V-type proton ATPase subunit H-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain cellular_component
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036986796.1 False 1667 mRNA 0.53 14 91103722 91207642
XM_036986797.1 False 1610 mRNA 0.53 13 91103722 91207642
XM_036986798.1 True 1458 mRNA 0.52 12 91124074 91207642

Neighbor

gene id symbol gene type direction distance location
oprk1 LOC105007147 coding downstream 44848 91046040 ~ 91058874 (-)
LOC110512221 chmp5 coding downstream 93189 90984582 ~ 91010533 (-)
bag1 LOC106569734 coding downstream 131269 90952992 ~ 90972453 (-)
LOC110530878 LOC106569723 coding downstream 324500 90761359 ~ 90779222 (-)
orc2 orc2 coding downstream 409302 90677241 ~ 90694420 (-)
LOC110530904 LOC106569715 coding upstream 83058 91290700 ~ 91324655 (-)
stam stam coding upstream 117472 91325114 ~ 91366612 (-)
adcyap1b NA coding upstream 315365 91523007 ~ 91546111 (-)
clul1 NA coding upstream 356427 91564069 ~ 91575884 (-)
G761469 NA non-coding downstream 155185 90948266 ~ 90948537 (-)
G761466 NA non-coding downstream 158558 90944884 ~ 90945164 (-)
G761463 NA non-coding downstream 167328 90935623 ~ 90936394 (-)
G761453 NA non-coding downstream 184463 90918182 ~ 90919259 (-)
G761585 NA non-coding upstream 16124 91223766 ~ 91226731 (-)
G761586 NA non-coding upstream 17803 91225445 ~ 91226180 (-)
G761630 NA non-coding upstream 121482 91329124 ~ 91329542 (-)
G761634 NA non-coding upstream 126445 91334087 ~ 91334457 (-)
G761467 NA other downstream 155616 90946479 ~ 90948106 (-)
G761176 NA other downstream 306148 90796147 ~ 90797574 (-)
G761034 NA other downstream 450982 90635679 ~ 90652740 (-)
G760971 NA other downstream 762419 90340812 ~ 90341303 (-)
G760362 NA other downstream 1568369 89534623 ~ 89535353 (-)
G761604 NA other upstream 53437 91261079 ~ 91272370 (-)

Expression


Co-expression Network