XLOC_002594 (si:ch211-251f6.7)


Basic Information

Item Value
gene id XLOC_002594
gene name si:ch211-251f6.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8051616 ~ 8053753 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004829
GCTCGCTACTGTtaaataactatcacagggtctgaccaatAGTTGAAAATCTAATCTGTGTTAGTGATGCACAAACAAAACAGCATCCGTTCCAGTGTACTGAGTGCTTGAATTAACTCACTCCTTCAACTGGTCTATTTTAGTTGACTAACGTAGTAGGGCAGAGTGAATGAAAAAAGGGTGCCGTTTTGTATACAACACTATAGTTCAGCTAGTGTCCATCGTTTTCATCCTGATTGTTCATTGGCTGATTGATGGCTTCACCTGTGCTTAATCTTGTTGACTGATGTTGCGCAGTTTCATGGTTGGTTGACAGTTTGCTTTTACGCCTGATTGGCtggatgtttaaataaaaaacagacaGCTGCGATGTTTTTCTTCAGTGCGGCTGTTGATGTTATCACTTTGACTGTAGAATCCTGCTcaaacaagacaagacaagGTCCAAACAGAACATGTATTGTGGAGCTATGAAGGTTTATCAAGGTGTTTTGCTGCTCTTGAGTTGCCAGATCCTTTACACTCTGgCTTTAGACTGTACCATAATGAATGGTAACCTGAAGCAGATTGACGCTGGGTCTGGTTCAGTGGTTGGAGTGAACGATCTAAATCAAGCGTTTGTGCTGCAAGATGATGTCTTCAGTCCGGTCAGCAAATCTCTAAAGCACTTCAGTGTTGGTCCTGCTGGTCAACTGGGAGTGAATGGAACCTACTACATCTTCAAATTGATGAGTGGCAGATTTGTTCAGTTTCCAGgtCTTCTCAAGCAGGTGGATGCTGGAGGTGATCAGATCATTGCAGGTGTCAATATGAATGACGACATCTTTTGTTTAAACATGGATGCTAACAACCAATGGCCATCCAGCACCACTCCTTGGGTTACCCTTAATGGAAAGCTGAAGTATTACAGCTGTGGCCCTTACAGCTGCTGGGGTGTGAACTCTGCTGACCGTATCTTTATCATGAAGGGTGTGTCCAGTAATGCCTGTTCTGGGGATGGGACTTTTGTAAATATTCCTGGTCTTCTCTCCATGATTGAAGTGGGAACAGATGGCAGTGTCTTTGGTGTCAACTACGAAGCAAAACTGTTCCAAAGAGTTGGTGTGAGTCGGTCTAACCCTGCTGGCACAGACTGGATCTCAATAATTGCCTGTCCCAATGGTCACAAACACGTTTCCTTTGACCTGGGTGTGCTGTGGGTTGTCTGTGTTGATGGCTCCATCCGTAAATGTACTCTATAATCTGAATCCCTTCATAATGGAAATCCTAAAATCATTAACagacaaataaaagtttaatcttGCGCTGTTTTCGGTCCTGTTCTATCTGTTGTCTCAAACATTACTAAAGTGTATTATTGGTGTCACATTTGTGTAGTGAATAATTCTGTCACTTCTGGTGGCCGTATATTAGATTCTTTTACAGGTATTAGTAAGGATTTTAAACAAGATGAAATGTACTTCCACTCCGCAAGAAACTCTGTTTTGAACATCAGTTTCAGTTAAATCAGGTCTTGAAGTGCTTTTTAATGGTTCAAATTATAAATTCTACAGAATATAATTCATCTATAGTCTTATGAAACCAACAATATTTAATATGACTGTAGCTGCACTAGTCAAAATAAATGATAGCCATGCTTTATACTGATGCCTTTGCTGTTTTGTTTCTCTATTCTCAGACACAAACACGc
>TCONS_00004830
GATGTTTTTCTTCAGTGCGGCTGTTGATGTTATCACTTTGACTGTAGAATCCTGCTcaaacaagacaagacaaggTTATGTCCAAACAGAACATGTATTGTGGAGCTATGAAGGTTTATCAAGGTGTTTTGCTGCTCTTGAGTTGCCAGATCCTTTACACTCTGgCTTTAGACTGTACCATAATGAATGGTAACCTGAAGCAGATTGACGCTGGGTCTGGTTCAGTGGTTGGAGTGAACGATCTAAATCAAGCGTTTGTGCTGCAAGATGATGTCTTCAGTCCGGTCAGCAAATCTCTAAAGCACTTCAGTGTTGGTCCTGCTGGTCAACTGGGAGTGAATGGAACCTACTACATCTTCAAATTGATGAGTGGCAGATTTGTTCAGTTTCCAGgtCTTCTCAAGCAGGTGGATGCTGGAGGTGATCAGATCATTGCAGGTGTCAATATGAATGACGACATCTTTTGTTTAAACATGGATGCTAACAACCAATGGCCATCCAGCACCACTCCTTGGGTTACCCTTAATGGAAAGCTGAAGTATTACAGCTGTGGCCCTTACAGCTGCTGGGGTGTGAACTCTGCTGACCGTATCTTTATCATGAAGGGTGTGTCCAGTAATGCCTGTTCTGGGGATGGGACTTTTGTAAATATTCCTGGTCTTCTCTCCATGATTGAAGTGGGAACAGATGGCAGTGTCTTTGGTGTCAACTACGAAGCAAAACTGTTCCAAAGAGTTGGTGTGAGTCGGTCTAACCCTGCTGGCACAGACTGGATCTCAATAATTGCCTGTCCCAATGGTCACAAACACGTTTCCTTTGACCTGGGTGTGCTGTGGGTTGTCTGTGTTGATGGCTCCATCCGTAAATGTACTCTATAATCTGAATCCCTTCATAATGGAAATCCTAAAATCATTAACagacaaataaaagtttaatcttGC

Function

symbol description
si:ch211-251f6.7 Is expressed in pancreas primordium; pharyngeal arch 3-7 skeleton; and yolk syncytial layer.

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0000421 autophagosome membrane cellular_component
GO:0032266 phosphatidylinositol-3-phosphate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091113-57 Is expressed in pancreas primordium; pharyngeal arch 3-7 skeleton; and yolk syncytial layer.

Ensembl:

ensembl_id ENSDARG00000091558

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004829 False 1690 mRNA 0.41 6 8051616 8053753
TCONS_00004830 True 941 mRNA 0.44 6 8052002 8053385

Neighbor

gene id symbol gene type direction distance location
XLOC_002593 zgc:136254 coding downstream 4852 8045364 ~ 8046764 (-)
XLOC_002592 nfkbil1 coding downstream 9668 8034688 ~ 8041948 (-)
XLOC_002591 atp6v0a2a coding downstream 18148 7988746 ~ 8033468 (-)
XLOC_002589 ewsr1a coding downstream 63199 7975585 ~ 7988417 (-)
XLOC_002590 NA coding downstream 67872 7981119 ~ 7983744 (-)
XLOC_002595 si:ch211-251f6.6 coding upstream 5097 8058850 ~ 8079830 (-)
XLOC_002596 ndufa9b coding upstream 74621 8128374 ~ 8129456 (-)
XLOC_002597 CU633857.1 coding upstream 92595 8146348 ~ 8153043 (-)
XLOC_002598 dhx29 coding upstream 101121 8154874 ~ 8197049 (-)
XLOC_002599 plpp1a coding upstream 212219 8265972 ~ 8295342 (-)
XLOC_002585 BX294661.1 non-coding downstream 158932 7870627 ~ 7892684 (-)
XLOC_002586 NA non-coding downstream 165576 7883753 ~ 7886040 (-)
XLOC_002575 BX537303.2 non-coding downstream 539493 7512008 ~ 7512123 (-)
XLOC_002572 NA non-coding downstream 797718 7238244 ~ 7253898 (-)
XLOC_002602 NA non-coding upstream 564965 8618718 ~ 8621543 (-)
XLOC_002603 NA non-coding upstream 585168 8638921 ~ 8657677 (-)
XLOC_002605 BX571955.1 non-coding upstream 622137 8675890 ~ 8677828 (-)
XLOC_002606 NA non-coding upstream 787945 8841698 ~ 8858568 (-)
XLOC_002609 CU694950.1 non-coding upstream 962968 9016721 ~ 9016837 (-)

Expression


Co-expression Network