G664129


Basic Information

Item Value
gene id G664129
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 1571530 ~ 1591912 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU755977
cattagatgtAGCTGTCtgttatattataatagagacagtagatctagctggtctgtaataatataatagagactgtagatctagctggtctgtcatgttataatagtgacagtagatctagctggtctgtcataatataatagacacaaagagacagttgatctagctggtctgtcataatataatagagacagaagatatagcctgtctgtgataatataacggagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagacagtagatctggctggtctgtcataatataacagagacagtagatctagctggtcggtcataatataatagagatagtatatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatgttacaatattggcagtagatctagctggtctgtcataatataatagtgacagtagatctagctggtctgtcataatataagagagactgtagatctagctggtctgtcataatataatagccacaaagagacagttgatctagctggtctgtcataatataatagagacagtatatttagttggtctgtcatattataatagtgacagtagatctagctggtctgtcataatatactagagacacaagatctagctggtctgtcataatataataaaaacagtagatctagctggtctgtcataaaataacagagacagtagatctagctggtctgtcataacatagagacaatagatttagctggtctgtcatgttataattgagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagaaagaagatctagctggtctgtcataatataataaaaacagtagatctagcctgtctgtcataaaataacagagacagtagatctagctggtctgtcataacataatagagacaatagatttagctggtctgtcatgttataatagagacagtagatctagctagtctgtcatataataatagtgacagtagatctagctggtctgtcatattgtaatagagacagtagatctggctggtctgtcataatataatagagagagtagatctagctagtctgtcatattataatataacagagacagtagatctagctggtctgtcataatataatagacacaaagagacagttgatctagctggtctgtcataatataatagacacagaagatctagcctgtctgtgataatataacggagacagtagatctagctggtctgtcataatatgatagagacagtatatctagctggtcagtcataatgtaacagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcatgttataaccgagacagtagatctagctggtctgtcatgttataaccgagacagtagatctagctggtctgtcataatataatatagacagtagatctagctggtctgtcatattgtaatagagacagtagatctggcataatataacagagacagtagatctagctggtttgtcatgttataatagagacagtatttctagctggtctgtaataatataatagagacagtagatctagctggtctctcataatataacagagacagaagatctagctggtctgtcatgttataatagagacaggagatctagctggtctgtcatgttataatagagacagtagatctagctggtctgtcataatataacagagacagtagttctagctggtcggtcataatataacggagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagacagtagatctggctggtctgtcataatataacagagacagtagatctagctggtcggtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagacagaagatcaggctggtctgtcataatataatagagacagtagatctagcaggtctgtcataatataatatagacagtagatctagcttgtctgtcataatataatatagacagtagatctagctggtctgtcatattgtaatagagacagtagatctggcataatataacagagagagtagatctagctggtttgtcatgttataatagagacagtatttctagctggtctgtaataatataatagagacagtagatctagctggtctctcataatataacagagacagaagatctagctggtctgtcatgttataatagagacaggagatctagctggtctgtcatgttataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtcggtcataatataacggagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagacagtagatctggctggtctgtcataatataacagagacagtagatctagctggtcggtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagacagtagatctagttggtctgtcatattataatagagacagtagatctagctagtctgtcatattataatagtgacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataataaaaacagtagatctagcctgtctgtcataaaataacagagacagtagatctagctggtctgtcataacataatagagacaatagatttagctggtctgtcatgttataatagagacagtagatctagctagtctgtcatataataatagtgacagtagatctagctggtctgtcata
>TU755978
cattagatgtAGCTGTCtgttatattataatagagacagtagatctagctggtctgtaataatataatagagactgtagatctagctggtctgtcatgttataatagtgacagtagatctagctggtctgtcataatataatagacacaaagagacagttgatctagctggtctgtcataatataatagagacagaagatatagcctgtctgtgataatataacggagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagacagtagatctggctggtctgtcataatataacagagacagtagatctagctggtcggtcatgttacaatattggcagtagatctagctggtctgtcataatataatagtgacagtagatctagctggtctgtcataatataagagagactgtagatctagctggtctgtcataatataatagccacaaagagacagttgatctagctggtctgtcataatataatatagacagtagatctagcttgtctgtcataatataatatagacagtagatctagctggtctgtcatattgtaatagagacagtagatctggcataatataacagagagagtagatctagctggtttgtcatgttataatagagacagtatttctagctggtctgtaataatataatagagacagtagatctagctggtctctcataatataacagagacagaagatctagctggtctgtcatgttataatagagacaggagatctagctggtctgtcatgttataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcataatataatatagacagtagatctagcttgtctgtcataatataatatagacagtagatctagctggtctgtcatattgtaatagagacagtagatctggcataatataacagagagagtagatctagctggtttgtcatgttataatagagacagtatttctagctggtctgtaataatataatagagacagtagatctagctggtctctcataatataacagagacagaagatctagctggtctgtcatgttataatagagacaggagatctagctggtctgtcatgttataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtcggtcataatataacggagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagacagtagatctggctggtctgtcataatataacagagacagtagatctagctggtcggtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagacagtagatctagttggtctgtcatattataatagagacagtagatctagctagtctgtcatattataatagtgacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataataaaaacagtagatctagcctgtctgtcataaaataacagagacagtagatctagctggtctgtcataacataatagagacaatagatttagctggtctgtcatgttataatagagacagtagatctagctagtctgtcatataataatagtgacagtagatctagctggtctgtcata
>TU755980
tctagctggtctgtcataatataatagagacagaagatatagcctgtctgtgataatataacggagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagacagtagatctggctggtctgtcataacataacagagacagtagatctagctggtctgtcataatataatatagacagtagatctagcttgtctgtcataatataatatagacagtagatctagctggtctgtcatattgtaatagagacagtagatctggcataatataacagagagagtagatctagctggtttgtcatgttataatagagacagtatttctagctggtctgtaataatataatagagacagtagatctagctggtctctcataatataacagagacagaagatctagctggtctgtcatgttataatagagacaggagatctagctggtctgtcatgttataatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtcggtcataatataacggagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagacagtagatctggctggtctgtcataatataacagagacagtagatctagctggtcggtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagacagtagatctagttggtctgtcatattataatagagacagtagatctagctagtctgtcatattataatagtgacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataataaaaacagtagatctagcctgtctgtcataaaataacagagacagtagatctagctggtctgtcataacataatagagacaatagatttagctggtctgtcatgttataatagagacagtagatctagctagtctgtcatataataatagtgacagtagatctagctggtctgtcata
>TU755983
ataacagagacagtagatctagcaggtctgtcataatataatagagacagtagatctagctggtctctcataatataacagagacagaagatctagctggtctgtcatgttataatagagacaggagatatagctggtctgtcatgttataatagagacagtagatctagctggtctgtcatattgtaatagagacagtagatctagctggtctgtcataaaataacagagacagtagatctagctggtctgtcataacataatagagacaatagatttagctggtctgtcatgttataatagagacagtagatctagctagtctgtcatataataatagtgacagtagatctagctggtctgtcata
>TU755984
cattagatgtAGCTGTCtgttatattataatagagacagtagatctagctggtctgtaataatataatagagactgtagatctagctggtctgtcatgttataatagtgacagtagatctagctggtctgtcataatataatagacacaaagagacagttgatctagctggtctgtcataatataatagagacagaagatatagcctgtctgtgataatataacggagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagacagtagatctggctggtctgtcataatataatagagagagtagatctagctggtctgtcatgttataaccgagacagtagatctagctggtctgtcatgttataaccgagacagtagatctagctggtctgtcataatataaaagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtcggtcataatataacggagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagacagtagatctggctggtctgtcataatataacagagacagtagatctagctggtcggtcataatataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagacagtagatctagttggtctgtcatattataatagagacagtagatctagctagtctgtcatattataatagtgacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataataaaaacagtagatctagcctgtctgtcataaaataacagagacagtagatctagctggtctgtcataacataatagagacaatagatttagctggtctgtcatgttataatagagacagtagatctagctagtctgtcatataataatagtgacagtagatctagctggtctgtcata
>TU755981
cattagatgtAGCTGTCtgttatattataatagagacagtagatctagctggtctgtaataatataatagagactgtagatctagctggtctgtcatgttataatagtgacagtagatctagctggtctgtcataatataatagacacaaagagacagttgatctagctggtctgtcataatataatagagacagaagatatagcctgtctgtgataatataacggagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagacagtagatctggctggtctgtcataatataacagagacagtagatctagctggtcggtcataatataatagagatagtatatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatgttacaatattgacaggagatctagctggtctgtcatgttataatagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatgttacaatattgacagtagatctagctggtctgtcataatataatagtgacagtagatctagctggtctgtcataatataagagagactgtagatctagctggtctgtcataatataatagccacaaagagacagttgatctagctggtctgtcataatataatagagacagtatatttagttggtctgtcatattataatagtgacagtagatctagctggtctgtcataatatactagagacacaagatctagctggtctgtcataatataataaaaacagtagatctagctggtctgtcataaaataacagagacagtagatctagctggtctgtcataacat
>TU755973
cattagatgtAGCTGTCtgttatattataatagagacagtagatctagctggtctgtaataatataatagagactgtagatctagctggtctgtcatgttataatagtgacagtagatctagctggtctgtcataatataatagacacaaagagacagttgatctagctggtctgtcataatataatagagacagaagatatagcctgtctgtgataatataacggagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagacagtagatctggctggtctgtcataatataacagagacagtagatctagctggtcggtcataatataatagagatagtatatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatgttacaatattggcagtagatctagctggtctgtcataatataatagtgacagtagatctagctggtctgtcataatataagagagactgtagatctagctggtctgtcataatataatagccacaaagagacagttgatctagctggtctgtcataatataatagagacagtatatttagttggtctgtcatattataatagtgacagtagatctagctggtctgtcataatatactagagacacaagatctagctggtctgtcataatataataaaaacagtagatctagctggtctgtcataaaataacagagacagtagatctagctggtctgtcataacatagagacaatagatttagctggtctgtcatgttataattgagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcataatataatagagaaagaagatctagctggtctgtcataatataataaaaacagtagatctagcctgtctgtcataaaataacagagacagtagatctagctggtctgtcataacataatagagacaatagatttagctggtctgtcatgttataatagagacagtagatctagctagtctgtcatataataatagtgacagtagatctagctggtctgtcatattgtaatagagacagtagatctggctggtctgtcataatataatagagagagtagatctagctagtctgtcatattataatataacagagacagtagatctagctggtctgtcataatataatagacacaaagagacagttgatctagctggtctgtcataatataatagacacagaagatctagcctgtctgtgataatataacggagacagtagatctagctggtctgtcataatatgatagagacagtatatctagctggtcagtcataatgtaacagagacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcatgttataaccgagacagtagatctagctggtctgtcatgttataaccgagacagtagatctagctggtctgtcatactataacagagacagtagatctagctggtctgtcatattgtaatagagacagaagatcaggctggtctgtcataatataatagagacagtagatctagctggtctgtcataatattatagagacagtagatctagctggtctgtaatattataatagtgacagtatatcaagctagtctgtcataataatataacagagacagtagatctagctggtctgtcataatataatagacacaaagagacagttgatctagctggtctgtcataaataatagagacagaagatctagctggtctgtcataacataataaaaacagtagatctagctggtctgtcataaaataacagagacagtagatctagctggtctgtcataacataatagagacaatagatttagctggtctgtcatgttataatagagacagtagatctagctagtctgtcatataataatagtgacagtagatctagctggtctgtcatattgtaatagagacattagatgtAGCTGTCtgttatattataatagagacagtagatctagctggtctgtaataatataatagagactgtagatctagctggtctgtcatgttataatagtgacagtagatctagctggtctgtcataatataatagagacagaagatatatcctgtctgtgataatataacggagacagtagatctagctggtctgtcataatataacagagactgtAGCTCTAgaaggtctgtcataatatattag
>TU755976
cattagatgtAGCTGTCtgttatattataatagagacagtagatctagctggtctgtaataatataatagagactgtagatctagctggtctgtcatgttataatagtgacagtagatctagctggtctgtcataatataatagacacaaagagacagttgatctagctggtctgtcataatataatagagacagaagatatagcctgtctgtgataatataacggagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagacagtagatctggctggtctgtcataatataacagagacagtagatctagctggtcggtcataatataatagagatagtatatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatgttacaatattggcagtagatctagctggtctgtcataatataatagtgacagtagatctagctggtctgtcataatataagagagactgtagatctagctggtctgtcataaaataacagagacagtagatctagctggtctgtcataacataatagagacaatagatttagctggtctgtcatgttataatagagacagtagatctagctagtctgtcatataataatagtgacagtagatctagctggtctgtcatattgtaatagagacattagatgtAGCTGTCtgttatattataatagagacagtagatctagctggtctgtaataatataatagagactgtagatctagctggtctgtcatgttataatagtgacagtagatctagctggtctgtcataatataatagagacagaagatatatcctgtctgtgataatataacggagacagtagatctagctggtctgtcataatataacagagactgtAGCTCTAgaaggtctgtcataatatattag
>TU755979
gtcatattgtaatagagacagtagatatggctggtctgtcataatataatagagagagtagatctagctagtctgtcatattataatagtgacagtagatctagctggtctgtcatattgtaatagagacagaagatcaggctggtctgtcataatataatagagacagtagatctagctggtttgtcataatataatagagacaatagatctagctggtctgtcatgttataatagagacagtagatatagctggtctgtcatgctataatagagacagtagatctagctggtctgtcatattataatagtgacagtagatctagctagtctgtcataatataacagagacagtagatctagcaggtctgtcataatataagagagactgtagatctagatggtctgtcataatataatagacacagagagacagttgattagctggtctttcataatataatagagacagacgaTCCAGcctgtctgtgataatataacggagacagtagatctagctggtctgtcataatataatagacacagaagatctagcctgtctgtgataatataatggagacagtagatctagctggtctgtcataatataatagagacagtaaatctagctagtctgtcatattataatagtgacagtagatctagctggtctgtcataatataacagagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatgttataaccgagacagtagatctagctggtctgtcatgttataaccgagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagcaggtctgtcataatataatagagacagtagatctagctggtctctcataatataacagagacagaagatctagctggtctgtcatgttataatagagacaggagatatagctggtctgtcatgttataatagagacagtagatctagctggtctgtcatattataatag
>TU755982
cattagatgtAGCTGTCtgttatattataatagagacagtagatctagctggtctgtaataatataatagagactgtagatctagctggtctgtcatgttataatagtgacagtagatctagctggtctgtcataatataatagacacaaagagacagttgatctagctggtctgtcataatataatagagacagaagatatagcctgtctgtgataatataacggagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagacagtagatctggctggtctgtcataatataatagagagagtagatctagctggtctgtcatgttataaccgagacagtagatctagctggtctgtcatgttataaccgagacagtagatctagctggtctgtcataatataatagagacagtagatctagctggtctgtcatattgtaatagagacagtagatctagctggtctgtcataatataacagagacagtagatctagcaggtctgtcataatataatagagacagtagatctagctggtctctcataatataacagagacagaagatctagctggtctgtcatgttataatagagacaggagatatagctggtctgtcatgttataatagagacagtagatctagctggtctgtcatattataatag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU755977 False 3066 lncRNA 0.36 3 1571530 1586313
TU755978 False 1798 lncRNA 0.36 4 1571530 1586313
TU755980 False 1119 lncRNA 0.36 2 1571530 1574178
TU755983 False 368 lncRNA 0.37 2 1571530 1591912
TU755984 False 1068 lncRNA 0.36 3 1571530 1586313
TU755981 False 895 lncRNA 0.36 3 1573557 1586313
TU755973 False 2288 lncRNA 0.36 2 1577470 1586313
TU755976 False 965 lncRNA 0.35 2 1577470 1586313
TU755979 False 1095 lncRNA 0.36 2 1578623 1583180
TU755982 True 707 lncRNA 0.37 3 1578623 1586313

Neighbor

gene id symbol gene type direction distance location
armc1l LOC106571055 coding downstream 72830 1479450 ~ 1498700 (-)
LOC110518775 LOC106592749 coding downstream 107863 1423487 ~ 1463667 (-)
LOC118965590 NA coding downstream 146539 1423487 ~ 1424991 (-)
LOC118965476 ppp1r14c coding downstream 156702 1307226 ~ 1414828 (-)
LOC118965602 NA coding downstream 409362 1160822 ~ 1162168 (-)
tbx18 LOC106571000 coding upstream 215673 1807585 ~ 1828394 (-)
LOC110529244 NA coding upstream 376378 1968290 ~ 1975576 (-)
selenoi LOC106571011 coding upstream 384398 1976310 ~ 2021626 (-)
LOC110529242 LOC106591799 coding upstream 469786 2061698 ~ 2096832 (-)
LOC110531067 dnmt3a coding upstream 518148 2110060 ~ 2200907 (-)
G664114 NA non-coding downstream 80047 1490475 ~ 1491483 (-)
G664106 NA non-coding downstream 94713 1476047 ~ 1476817 (-)
G664100 NA non-coding downstream 112666 1458524 ~ 1458864 (-)
G664013 NA non-coding downstream 168001 1394739 ~ 1403529 (-)
G664131 NA non-coding upstream 3559 1595471 ~ 1597233 (-)
G664148 NA non-coding upstream 22566 1614478 ~ 1614714 (-)
G664264 NA non-coding upstream 59912 1651824 ~ 1683065 (-)
G664267 NA non-coding upstream 63472 1655384 ~ 1696921 (-)
G664287 NA non-coding upstream 103794 1695706 ~ 1695997 (-)
G664089 NA other downstream 133089 1437760 ~ 1438441 (-)
G663235 NA other downstream 1141272 428191 ~ 430258 (-)
G663215 NA other downstream 1184548 381322 ~ 388193 (-)
hmgn3 LOC106570980 other downstream 1320476 204110 ~ 251092 (-)
G664733 NA other upstream 401977 1993889 ~ 1994530 (-)
G664763 rab10 other upstream 699490 2291402 ~ 2350981 (-)
G665603 NA other upstream 1644976 3236888 ~ 3240052 (-)
G665655 NA other upstream 1748144 3340056 ~ 3340960 (-)
G665718 NA other upstream 1825201 3417113 ~ 3418288 (-)

Expression

G664129 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
End of interactive chart.

G664129 Expression in each Bioproject

Bar chart with 7 bars.
G664129 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
End of interactive chart.

Co-expression Network